##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140153_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6888219 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 21.487690069087524 18.0 18.0 25.0 18.0 33.0 2 28.090473459104597 29.0 27.0 31.0 25.0 33.0 3 30.054713126861966 31.0 29.0 33.0 25.0 33.0 4 31.234237906779676 33.0 31.0 33.0 29.0 33.0 5 32.24826533535011 33.0 33.0 33.0 31.0 33.0 6 35.87766750737745 38.0 36.0 38.0 31.0 38.0 7 36.017683380856504 38.0 36.0 38.0 33.0 38.0 8 35.82666012796631 38.0 36.0 38.0 31.0 38.0 9 36.74023299781845 38.0 37.0 38.0 34.0 38.0 10-11 36.88998389859556 38.0 38.0 38.0 35.0 38.0 12-13 37.06081347007115 38.0 38.0 38.0 36.0 38.0 14-15 36.96722324014379 38.0 38.0 38.0 35.5 38.0 16-17 37.0663021892887 38.0 38.0 38.0 35.5 38.0 18-19 37.20511767991117 38.0 38.0 38.0 36.0 38.0 20-21 37.268039578058406 38.0 38.0 38.0 36.0 38.0 22-23 37.2509422846765 38.0 38.0 38.0 36.5 38.0 24-25 37.32625178546388 38.0 38.0 38.0 37.0 38.0 26-27 37.311812374797164 38.0 38.0 38.0 37.0 38.0 28-29 37.293254872377034 38.0 38.0 38.0 37.0 38.0 30-31 37.29825513040983 38.0 38.0 38.0 37.0 38.0 32-33 37.28042055296977 38.0 38.0 38.0 37.0 38.0 34-35 37.19440236928635 38.0 38.0 38.0 36.0 38.0 36-37 37.21963223221295 38.0 38.0 38.0 36.0 38.0 38-39 37.200638660574384 38.0 38.0 38.0 36.0 38.0 40-41 37.20612658554894 38.0 38.0 38.0 36.0 38.0 42-43 37.181942784929916 38.0 38.0 38.0 36.0 38.0 44-45 37.140990891200225 38.0 38.0 38.0 36.0 38.0 46-47 37.08847528692243 38.0 38.0 38.0 36.0 38.0 48-49 37.02505718584085 38.0 38.0 38.0 36.0 38.0 50-51 36.97192303817696 38.0 38.0 38.0 36.0 38.0 52-53 36.86536383236996 38.0 38.0 38.0 35.5 38.0 54-55 36.891222873095366 38.0 38.0 38.0 35.5 38.0 56-57 36.84180961819813 38.0 38.0 38.0 35.0 38.0 58-59 36.81593252664884 38.0 38.0 38.0 35.0 38.0 60-61 36.80770140506483 38.0 38.0 38.0 35.0 38.0 62-63 36.812208137789284 38.0 38.0 38.0 35.0 38.0 64-65 36.8153868037545 38.0 38.0 38.0 35.0 38.0 66-67 36.80660414677749 38.0 38.0 38.0 35.0 38.0 68-69 36.78512679839561 38.0 38.0 38.0 35.0 38.0 70-71 36.78106155345803 38.0 38.0 38.0 35.0 38.0 72-73 36.788692708064445 38.0 38.0 38.0 35.0 38.0 74-75 36.72337385851097 38.0 38.0 38.0 34.5 38.0 76-77 36.71846138430904 38.0 38.0 38.0 34.5 38.0 78-79 36.71436538962971 38.0 38.0 38.0 34.5 38.0 80-81 36.690045160545296 38.0 38.0 38.0 34.0 38.0 82-83 36.62723088427851 38.0 38.0 38.0 34.0 38.0 84-85 36.61465775130138 38.0 38.0 38.0 34.0 38.0 86-87 36.603766282763615 38.0 38.0 38.0 34.0 38.0 88-89 36.57730829056898 38.0 38.0 38.0 34.0 38.0 90-91 36.5815138069903 38.0 38.0 38.0 34.0 38.0 92-93 36.548554426273824 38.0 38.0 38.0 34.0 38.0 94-95 36.474693807702586 38.0 38.0 38.0 34.0 38.0 96-97 36.48647294420051 38.0 38.0 38.0 34.0 38.0 98-99 36.51059711194157 38.0 37.5 38.0 34.0 38.0 100 34.84944194219152 38.0 34.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 5.0 19 15.0 20 42.0 21 156.0 22 565.0 23 1545.0 24 3827.0 25 7562.0 26 13685.0 27 22958.0 28 36166.0 29 52903.0 30 71169.0 31 93729.0 32 124456.0 33 175046.0 34 278407.0 35 533498.0 36 1660922.0 37 3811560.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.90175109124724 17.074340987125993 19.456451660436464 23.567456261190305 2 14.272399735044797 21.093413551686158 41.85336802957137 22.780818683697674 3 18.018779600358233 25.659724233506516 31.60017124891064 24.721324917224614 4 12.390590368860224 18.083818182900398 38.796574266875076 30.7290171813643 5 13.318740301375435 37.03922595956952 35.77294798553879 13.869085753516257 6 29.52925857903182 37.99403009689442 18.779774568723788 13.696936755349967 7 26.136189920790848 32.76963174370617 23.028536113616596 18.06564222188638 8 24.24995488674213 36.65008327987249 21.269213420769578 17.8307484126158 9 25.438491430077935 16.928047729028357 21.12943853846691 36.5040223024268 10-11 24.086160733275175 26.721624268914795 28.931288334473688 20.260926663336342 12-13 25.09324979359687 24.20983566289051 29.014923886711504 21.681990656801126 14-15 22.190503815282295 25.533624874586597 26.785007851811915 25.490863458319197 16-17 21.63361095226502 28.731251140534297 27.4107719281283 22.224365979072385 18-19 21.685235327157862 27.597068269751585 29.40508279426075 21.3126136088298 20-21 22.566152727172422 26.748636150654768 29.29041362081812 21.394797501354684 22-23 22.190757735811363 26.820078178400298 29.175643845178662 21.813520240609677 24-25 22.06140575993256 26.901846888734323 29.368014437618424 21.6687329137147 26-27 21.96756921906732 27.0759984296702 29.31383456341775 21.64259778784473 28-29 21.901577082587156 27.0480308421724 29.367629272752854 21.68276280248759 30-31 22.04185125458219 27.038431563940946 29.370081786086317 21.549635395390553 32-33 21.966170266701283 27.179772547247428 29.194217084553785 21.659840101497508 34-35 22.176994988617935 27.024470344524843 29.2236390986585 21.574895568198723 36-37 21.927318629241004 27.081206324959396 29.243092868113717 21.748382177685883 38-39 21.70484334890347 27.012116285588494 29.424268917156184 21.858771448351856 40-41 22.000307561186077 26.85870503968928 29.364430229537025 21.77655716958762 42-43 22.08215070679547 26.853765696662514 29.18028677226705 21.883796824274963 44-45 21.93270677518731 27.161952563955367 29.01918427505396 21.88615638580336 46-47 22.190214131642115 26.95000036497638 28.60455235038706 22.25523315299445 48-49 22.065627875541498 27.100008532627477 28.62816221322852 22.206201378602504 50-51 21.92151487048178 27.26045677173833 28.653227925065885 22.164800432714017 52-53 22.089812042337716 27.26594478084911 28.611170187221724 22.03307298959145 54-55 22.07890054699022 27.20451289313891 28.46420986278828 22.25237669708259 56-57 22.217303544781128 27.350344180297125 28.243663450664506 22.188688824257238 58-59 21.896793760001536 27.5036013504665 28.6139192594793 21.98568563005267 60-61 22.087006449545132 27.7209164490378 28.297767824428067 21.894309276989 62-63 21.835575509105006 27.890972675444374 28.30542378108718 21.968028034363435 64-65 21.786835293957655 27.81199273894223 28.35753877078137 22.043633196318744 66-67 21.87309843843785 27.821137495612497 28.20939737347236 22.096366692477293 68-69 21.966414470454033 27.672613773101702 28.32012296259146 22.040848793852806 70-71 21.94036881416706 27.241099211647363 28.419557428415903 22.39897454576968 72-73 22.08079277364342 27.14530641399684 28.486483889935286 22.287416922424452 74-75 21.980905697819093 27.41105048398782 28.328101877540973 22.279941940652115 76-77 22.192352170959378 27.262903691938916 28.18283997705091 22.361904160050795 78-79 22.20149016807956 27.356643107496414 28.123086317149987 22.31878040727404 80-81 22.183062809807737 27.38539030337001 28.033200906237767 22.39834598058449 82-83 22.303822427252975 27.331423094379854 28.09511919499999 22.26963528336718 84-85 22.427162106324047 27.35335672294107 27.98406992823606 22.235411242498827 86-87 22.22347934364659 27.38514127818551 28.08859109306085 22.30278828510705 88-89 22.313325044183202 27.438836551138806 28.00632499810484 22.24151340657315 90-91 22.40526003419338 27.394671022844662 28.020823066973417 22.179245875988542 92-93 22.393432358516176 27.460727132550346 27.969976148495196 22.175864360438283 94-95 22.230302207256138 27.604734014180803 27.920244552646356 22.2447192259167 96-97 22.36244093995432 27.608469054100564 28.0936707969586 21.935419208986513 98-99 23.35660191570293 29.583699963861648 28.270930745058493 18.788767375376928 100 29.76665705298397 40.56363134851217 29.669711598503863 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1958.0 1 1833.0 2 2143.5 3 2736.5 4 3407.0 5 4651.0 6 5786.0 7 8014.0 8 10365.5 9 10909.5 10 10417.0 11 10084.0 12 11104.5 13 13800.0 14 19470.5 15 26284.0 16 30940.0 17 32728.5 18 31579.0 19 28616.5 20 25387.0 21 22956.0 22 22856.0 23 26020.0 24 32093.0 25 40998.5 26 54137.0 27 68721.0 28 81519.5 29 96052.0 30 110685.5 31 124114.5 32 140528.0 33 159276.0 34 176376.0 35 193030.5 36 211378.5 37 227027.0 38 237813.0 39 246337.0 40 257677.5 41 268183.5 42 275555.0 43 287351.0 44 302530.0 45 308359.5 46 303490.5 47 298648.5 48 293769.0 49 287720.5 50 280996.5 51 271563.5 52 259225.5 53 245131.0 54 228970.5 55 210744.5 56 191707.0 57 171947.5 58 152290.5 59 131135.0 60 109460.0 61 88315.5 62 68519.0 63 52531.5 64 39558.0 65 29269.5 66 21454.5 67 16200.5 68 12252.0 69 8888.5 70 6448.5 71 4661.0 72 3315.0 73 2267.0 74 1569.5 75 1078.0 76 710.0 77 450.0 78 272.0 79 159.5 80 99.5 81 67.0 82 45.5 83 30.5 84 19.0 85 16.5 86 14.5 87 9.0 88 4.5 89 1.5 90 1.5 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.01476433893870099 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.9202519124840064E-4 26-27 3.194668504859563E-4 28-29 0.003951212117844611 30-31 0.00634016835473649 32-33 0.004320685504078275 34-35 0.0017681416816313312 36-37 0.0 38-39 0.0 40-41 5.197771878554209E-4 42-43 0.0 44-45 1.5067286735740132E-5 46-47 4.4101118085001714E-4 48-49 0.0014885837138813192 50-51 0.0030255018077179853 52-53 0.0 54-55 0.00273307000570332 56-57 0.039011326818834846 58-59 0.06096218421305274 60-61 0.04188154469568989 62-63 0.013737899869709172 64-65 3.4407818504983564E-4 66-67 0.0 68-69 0.0 70-71 0.002809662938616312 72-73 0.005060241706597767 74-75 0.004140503267367077 76-77 0.003220729417531521 78-79 0.007980390637035343 80-81 0.01572190831881463 82-83 0.04141470394926762 84-85 0.019068626768658347 86-87 0.001902496065647327 88-89 0.0012262638971930076 90-91 1.221391947118614E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 52.0 20-21 220.0 22-23 517.0 24-25 671.0 26-27 1825.0 28-29 4942.0 30-31 13758.0 32-33 17605.0 34-35 23862.0 36-37 37680.0 38-39 42765.0 40-41 43098.0 42-43 49628.0 44-45 60372.0 46-47 60692.0 48-49 55820.0 50-51 49736.0 52-53 46365.0 54-55 49308.0 56-57 50472.0 58-59 53687.0 60-61 53504.0 62-63 54247.0 64-65 59343.0 66-67 64250.0 68-69 65403.0 70-71 74306.0 72-73 56085.0 74-75 55271.0 76-77 57604.0 78-79 59931.0 80-81 59927.0 82-83 55630.0 84-85 55351.0 86-87 57256.0 88-89 59941.0 90-91 61241.0 92-93 60855.0 94-95 70602.0 96-97 213809.0 98-99 1591597.0 100-101 3338991.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.1843240100427 #Duplication Level Percentage of deduplicated Percentage of total 1 90.89539717153092 79.2465375802427 2 6.551344232320409 11.42349036503894 3 1.4854048532438027 3.885120540338928 4 0.5131258199213605 1.7894611096777087 5 0.23180032279282162 1.0104677224000924 6 0.1099195177168178 0.5749955308590402 7 0.06728914399780224 0.41065909728639677 8 0.040942418948953174 0.28556296955203564 9 0.025893561108752912 0.20317613593314188 >10 0.07756331661833703 0.9966622078329246 >50 9.414722720419372E-4 0.05359688140618009 >100 3.055104791506846E-4 0.04851852189206078 >500 2.421973663497307E-5 0.01239498261971958 >1k 4.8439312270969406E-5 0.059356354920100496 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.4517540746018673E-5 0.0 0.0 0.0 3 0.0 1.4517540746018673E-5 0.0 1.4517540746018673E-5 0.0 4 0.0 2.9035081492037347E-5 0.0 1.4517540746018673E-5 0.0 5 0.0 2.9035081492037347E-5 0.0 1.4517540746018673E-5 0.0 6 5.8070162984074694E-5 2.9035081492037347E-5 0.0 1.4517540746018673E-5 0.0 7 5.8070162984074694E-5 2.9035081492037347E-5 0.0 1.4517540746018673E-5 0.0 8 5.8070162984074694E-5 2.9035081492037347E-5 0.0 1.4517540746018673E-5 0.0 9 5.8070162984074694E-5 8.710524447611204E-5 0.0 7.258770373009337E-5 1.4517540746018673E-5 10-11 5.8070162984074694E-5 8.710524447611204E-5 0.0 8.710524447611204E-5 1.4517540746018673E-5 12-13 5.8070162984074694E-5 8.710524447611204E-5 0.0 1.0162278522213071E-4 1.4517540746018673E-5 14-15 5.8070162984074694E-5 1.596929482062054E-4 0.0 1.0888155559514005E-4 1.4517540746018673E-5 16-17 5.8070162984074694E-5 1.742104889522241E-4 0.0 1.1614032596814939E-4 1.4517540746018673E-5 18-19 7.258770373009337E-5 2.1050434081727076E-4 0.0 1.233990963411587E-4 1.4517540746018673E-5 20-21 7.258770373009337E-5 2.467981926823174E-4 0.0 1.3065786671416805E-4 1.4517540746018673E-5 22-23 7.98464741031027E-5 2.613157334283361E-4 0.0 1.3065786671416805E-4 1.4517540746018673E-5 24-25 8.710524447611204E-5 3.0486835566639214E-4 0.0 1.6695171857921475E-4 1.4517540746018673E-5 26-27 8.710524447611204E-5 3.193858964124108E-4 0.0 2.758332741743548E-4 1.4517540746018673E-5 28-29 8.710524447611204E-5 3.193858964124108E-4 0.0 6.387717928248216E-4 1.4517540746018673E-5 30-31 8.710524447611204E-5 3.484209779044482E-4 0.0 0.0022066661933948383 1.4517540746018673E-5 32-33 8.710524447611204E-5 3.484209779044482E-4 0.0 0.005872345231764553 1.4517540746018673E-5 34-35 8.710524447611204E-5 3.992323705155135E-4 0.0 0.010191313603705109 1.4517540746018673E-5 36-37 8.710524447611204E-5 4.5004376312657887E-4 0.0 0.017638812006412687 1.4517540746018673E-5 38-39 8.710524447611204E-5 4.5004376312657887E-4 0.0 0.03643902727250687 1.4517540746018673E-5 40-41 8.710524447611204E-5 4.790788446186162E-4 0.0 0.0571410403763295 1.4517540746018673E-5 42-43 8.710524447611204E-5 5.081139261106536E-4 0.0 0.06931399829186616 1.4517540746018673E-5 44-45 8.710524447611204E-5 5.879604002137562E-4 0.0 0.08375895133415473 1.4517540746018673E-5 46-47 8.710524447611204E-5 6.242542520788029E-4 0.0 0.09994600926596556 1.4517540746018673E-5 48-49 8.710524447611204E-5 6.242542520788029E-4 0.0 0.11518942704928517 1.4517540746018673E-5 50-51 1.0162278522213071E-4 7.549121187929711E-4 0.0 0.13074497195864418 1.4517540746018673E-5 52-53 1.0162278522213071E-4 7.694296595389897E-4 0.0 0.17163362546980576 2.177631111902801E-5 54-55 1.0162278522213071E-4 7.839472002850083E-4 0.0 0.22380240814062385 2.9035081492037347E-5 56-57 1.0162278522213071E-4 7.98464741031027E-4 0.0 0.291541253261547 2.9035081492037347E-5 58-59 1.0162278522213071E-4 8.129822817770457E-4 0.0 0.33775058545612446 2.9035081492037347E-5 60-61 1.1614032596814937E-4 8.492761336420923E-4 0.0 0.3594034974788113 2.9035081492037347E-5 62-63 1.742104889522241E-4 8.710524447611204E-4 0.0 0.37672292358881154 4.355262223805602E-5 64-65 1.742104889522241E-4 0.0010452629337133444 0.0 0.383284852006012 4.355262223805602E-5 66-67 1.742104889522241E-4 0.0010452629337133444 0.0 0.3898758155047045 4.355262223805602E-5 68-69 1.742104889522241E-4 0.0010670392448323726 0.0 0.39607480540325446 4.355262223805602E-5 70-71 1.9598680007125208E-4 0.0010742980152053819 0.0 0.40148258933114644 4.355262223805602E-5 72-73 2.613157334283361E-4 0.0010742980152053819 0.0 0.4057434875401029 4.355262223805602E-5 74-75 2.613157334283361E-4 0.0010888155559514005 0.0 0.4092857674821314 4.355262223805602E-5 76-77 2.613157334283361E-4 0.0011323681781894566 0.0 0.41273368340931094 4.355262223805602E-5 78-79 2.613157334283361E-4 0.0011614032596814938 0.0 0.4150637486990469 4.355262223805602E-5 80-81 2.613157334283361E-4 0.0011614032596814938 0.0 0.4157896257363478 4.355262223805602E-5 82-83 2.613157334283361E-4 0.0011686620300545032 0.0 0.41652276154402174 4.355262223805602E-5 84-85 2.685745038013454E-4 0.0011759208004275125 0.0 0.4168494062108072 4.355262223805602E-5 86-87 2.8309204454736415E-4 0.00120495588191955 0.0 0.4170236166997594 4.355262223805602E-5 88 2.9035081492037346E-4 0.0012775435856496433 0.0 0.41704539301087845 4.355262223805602E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9470 0.0 49.593266 1 GTATCAA 18065 0.0 37.573124 1 ATCAACG 22635 0.0 30.828737 3 TCAACGC 22845 0.0 30.675564 4 CAACGCA 23230 0.0 30.148874 5 TATCAAC 23610 0.0 29.756868 2 AACGCAG 23930 0.0 29.337994 6 ACGCAGA 26955 0.0 26.014034 7 CGCAGAG 27665 0.0 25.361765 8 TGGTATC 4135 0.0 24.977047 2 GTGGTAT 4370 0.0 24.41196 1 CTTATAC 7755 0.0 23.018543 1 GCAGAGT 31775 0.0 22.108046 9 TATACAC 10290 0.0 21.062887 3 TACATGG 22680 0.0 20.370274 2 GAGTACT 19005 0.0 19.867931 12-13 ACATGGG 22800 0.0 19.683039 3 GTACATG 22995 0.0 19.5737 1 AGAGTAC 29185 0.0 19.54869 10-11 CAGAGTA 31000 0.0 19.192406 10-11 >>END_MODULE