##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140152_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5689410 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 21.394153348062453 18.0 18.0 25.0 18.0 33.0 2 28.072193426031873 29.0 27.0 31.0 25.0 33.0 3 30.09121051216207 31.0 29.0 33.0 27.0 33.0 4 31.253084766258716 33.0 31.0 33.0 29.0 33.0 5 32.26536811374115 33.0 33.0 33.0 31.0 33.0 6 35.915306332291046 38.0 36.0 38.0 31.0 38.0 7 36.053564077821775 38.0 36.0 38.0 33.0 38.0 8 35.883067488544505 38.0 36.0 38.0 31.0 38.0 9 36.7722516042964 38.0 37.0 38.0 34.0 38.0 10-11 36.91321384818461 38.0 38.0 38.0 35.0 38.0 12-13 37.085039573523446 38.0 38.0 38.0 36.0 38.0 14-15 36.98972775735973 38.0 38.0 38.0 35.5 38.0 16-17 37.088026702241535 38.0 38.0 38.0 36.0 38.0 18-19 37.218306203982486 38.0 38.0 38.0 36.0 38.0 20-21 37.28067450917986 38.0 38.0 38.0 36.5 38.0 22-23 37.263743905376685 38.0 38.0 38.0 36.5 38.0 24-25 37.33484889798048 38.0 38.0 38.0 37.0 38.0 26-27 37.3197272719225 38.0 38.0 38.0 37.0 38.0 28-29 37.301385528518246 38.0 38.0 38.0 37.0 38.0 30-31 37.30660772724407 38.0 38.0 38.0 37.0 38.0 32-33 37.28876578424856 38.0 38.0 38.0 37.0 38.0 34-35 37.20134361650198 38.0 38.0 38.0 36.0 38.0 36-37 37.2231067223879 38.0 38.0 38.0 36.0 38.0 38-39 37.194046277527654 38.0 38.0 38.0 36.0 38.0 40-41 37.21373074249526 38.0 38.0 38.0 36.5 38.0 42-43 37.193929822814354 38.0 38.0 38.0 36.0 38.0 44-45 37.15734209527155 38.0 38.0 38.0 36.0 38.0 46-47 37.10917901981192 38.0 38.0 38.0 36.0 38.0 48-49 37.04733290113731 38.0 38.0 38.0 36.0 38.0 50-51 36.998326363399 38.0 38.0 38.0 36.0 38.0 52-53 36.89745349932419 38.0 38.0 38.0 36.0 38.0 54-55 36.9217260530016 38.0 38.0 38.0 36.0 38.0 56-57 36.8757396906292 38.0 38.0 38.0 35.5 38.0 58-59 36.84773809703431 38.0 38.0 38.0 35.0 38.0 60-61 36.83646835381634 38.0 38.0 38.0 35.0 38.0 62-63 36.84134886177362 38.0 38.0 38.0 35.0 38.0 64-65 36.84462080710939 38.0 38.0 38.0 35.0 38.0 66-67 36.835761135734096 38.0 38.0 38.0 35.0 38.0 68-69 36.812673788234974 38.0 38.0 38.0 35.0 38.0 70-71 36.807450457136035 38.0 38.0 38.0 35.0 38.0 72-73 36.816836965292055 38.0 38.0 38.0 35.0 38.0 74-75 36.75241316536457 38.0 38.0 38.0 35.0 38.0 76-77 36.74982506665085 38.0 38.0 38.0 35.0 38.0 78-79 36.74964001663126 38.0 38.0 38.0 35.0 38.0 80-81 36.72818663884627 38.0 38.0 38.0 35.0 38.0 82-83 36.66751530767688 38.0 38.0 38.0 34.0 38.0 84-85 36.65691824769057 38.0 38.0 38.0 34.0 38.0 86-87 36.64640924800893 38.0 38.0 38.0 34.0 38.0 88-89 36.621868856405584 38.0 38.0 38.0 34.0 38.0 90-91 36.62915302789004 38.0 38.0 38.0 34.0 38.0 92-93 36.59490466578648 38.0 38.0 38.0 34.0 38.0 94-95 36.52268053531863 38.0 38.0 38.0 34.0 38.0 96-97 36.53544979330462 38.0 38.0 38.0 34.0 38.0 98-99 36.55967214329644 38.0 38.0 38.0 34.0 38.0 100 34.92834369850499 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 11.0 19 22.0 20 55.0 21 134.0 22 471.0 23 1332.0 24 3149.0 25 6211.0 26 11205.0 27 18689.0 28 29187.0 29 42251.0 30 56787.0 31 74897.0 32 99236.0 33 140902.0 34 222098.0 35 428411.0 36 1369822.0 37 3184538.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.24333103080988 17.19828593826073 19.73919967096764 23.819183359961755 2 14.129107757149962 21.111339052493964 42.1688687034782 22.590684486877873 3 17.935603164475754 25.646508161654722 31.86637981794246 24.551508855927064 4 12.341771818167437 18.313656424831397 38.89368141863568 30.45089033836549 5 13.3078825396658 36.922176464694935 36.054195426239275 13.71574556939999 6 29.30207174381878 38.132583167674674 18.946235198377337 13.619109890129206 7 25.96184841661965 32.723920406509635 23.181278902381795 18.132952274488918 8 24.014757241963576 36.77966608136872 21.55494154929949 17.650635127368215 9 25.182365131006556 16.996999688895688 21.29649647327227 36.52413870682549 10-11 23.980069989682587 26.68318859073261 29.20643792590093 20.13030349368388 12-13 25.001388544682136 24.077145081827464 29.22718700181565 21.694279371674742 14-15 22.10839085247855 25.48371448006032 26.82153334001241 25.586361327448714 16-17 21.7205914145755 28.807143447211576 27.380062256016004 22.092202882196922 18-19 21.714422057823217 27.642778425179408 29.307239239218124 21.33556027777924 20-21 22.43422780824864 26.82907987788689 29.159281112112694 21.577411201751776 22-23 22.14824646609103 26.957637388192634 29.090401414934647 21.803714730781685 24-25 22.035997965394298 27.17510011080989 29.22040269688093 21.568499226914877 26-27 21.959747708942267 27.416838450212072 29.139494099290157 21.483919741555503 28-29 21.778537038110237 27.3441710847334 29.24733062646042 21.62996125069594 30-31 22.331645330040956 27.03845874515552 29.167217963700224 21.4626779611033 32-33 22.017227919285478 27.206448340500604 29.157472709229243 21.618851030984672 34-35 22.0078366588168 27.024549067485015 29.235353013642634 21.73226126005555 36-37 21.85185333203669 27.244622599491734 29.233351584012407 21.67017248445917 38-39 21.700123712504254 26.97757104536039 29.485123189479694 21.837182052655667 40-41 21.9762258957948 26.839388728567037 29.39326057251429 21.791124803123875 42-43 22.14645919357866 26.81435932225233 29.25580140127414 21.783380082894872 44-45 21.90289491838001 27.184845179183387 29.087891531192867 21.82436837124374 46-47 22.241752045836233 26.862285711181684 28.619122804126263 22.276839438855824 48-49 22.099681488035568 26.97386875106907 28.715654694416287 22.210795066479072 50-51 21.85453125304525 27.18370468484595 28.81599472581905 22.145769336289753 52-53 22.086551805522774 27.156167099362754 28.856388954448903 21.900892140665565 54-55 22.032697872694996 27.08848461466537 28.6587544887784 22.220063023861233 56-57 22.29100251980584 27.375556953049973 28.279101992721117 22.05433853442307 58-59 21.85025389182278 27.629099771238558 28.75126437982623 21.76938195711243 60-61 22.076273978057824 27.94114331420473 28.27900657504003 21.703576132697417 62-63 21.74261854130057 28.227056510558096 28.24941001998522 21.78091492815612 64-65 21.678703007453404 28.12876689589638 28.335108426465673 21.85742167018455 66-67 21.79359912072091 28.12279279635049 28.268877083306325 21.814730999622277 68-69 21.891267866272244 27.868948990642888 28.377296372981853 21.86248677010301 70-71 21.955042946150765 27.3711473791539 28.45426316090471 22.219546513790633 72-73 22.12224435816359 27.218093564533525 28.542504053662398 22.11715802364049 74-75 21.957934393351877 27.42325608874152 28.449539576094562 22.16926994181204 76-77 22.15205401343941 27.332367031339093 28.21508390307849 22.300495052143006 78-79 22.187200749276144 27.447269659153257 28.109403883131794 22.256125708438805 80-81 22.198783804673205 27.401270053818184 28.11286883507373 22.28707730643488 82-83 22.233787615314853 27.416224591511977 28.108411164707555 22.241576628465616 84-85 22.398139652305726 27.37253938996384 28.06685265542683 22.162468302303605 86-87 22.176124758552646 27.450242805681548 28.1391024744705 22.234529961295305 88-89 22.26953242749811 27.527922967984846 28.01499235026134 22.1875522542557 90-91 22.346317340934416 27.498214323941777 28.064439944543334 22.09102839058047 92-93 22.354803929207915 27.48637872337898 27.99412135296936 22.16469599444375 94-95 22.254612465194114 27.61636373627073 27.963815321688095 22.165208476847056 96-97 22.267276693114844 27.678606767781755 28.102771529615012 21.951345009488385 98-99 23.306036243905947 29.624874768205917 28.334308693222948 18.734780294665185 100 29.646236942065922 40.70855303621838 29.645210021715695 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1278.0 1 1231.5 2 1556.5 3 2062.5 4 2620.0 5 3627.0 6 4555.5 7 6055.5 8 7506.0 9 7877.0 10 7632.5 11 7548.5 12 8416.5 13 10388.5 14 14606.5 15 19800.0 16 23438.0 17 24940.0 18 24413.5 19 22547.0 20 20320.0 21 18469.0 22 18504.5 23 21135.0 24 26371.5 25 34408.0 26 45656.5 27 58277.0 28 69469.5 29 81524.0 30 93819.0 31 105680.5 32 119370.0 33 134264.0 34 149318.5 35 162938.0 36 177838.0 37 191267.0 38 199430.5 39 206277.5 40 215694.5 41 224386.5 42 231720.0 43 245915.0 44 262712.5 45 267261.5 46 260153.5 47 252861.0 48 245669.5 49 238169.5 50 231087.0 51 222609.0 52 210827.0 53 197630.0 54 184014.5 55 168343.5 56 152121.0 57 136133.5 58 120399.5 59 103139.0 60 86058.5 61 69859.5 62 54435.5 63 41921.5 64 31824.5 65 23560.5 66 17297.0 67 13190.0 68 9988.5 69 7227.0 70 5224.0 71 3728.5 72 2636.5 73 1805.0 74 1181.0 75 785.5 76 513.5 77 324.0 78 202.0 79 117.5 80 71.0 81 50.0 82 43.5 83 37.0 84 26.5 85 17.5 86 9.5 87 4.5 88 1.5 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.014289706665541769 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.900544036586935E-4 26-27 2.6371818020390694E-4 28-29 0.0035175036698555477 30-31 0.005563278908562142 32-33 0.0036342267238804508 34-35 0.0015656442803122445 36-37 0.0 38-39 8.93295495718256E-6 40-41 3.865810003169964E-4 42-43 0.0 44-45 9.122506967086633E-6 46-47 4.143075686811467E-4 48-49 0.001282170517715369 50-51 0.0024455080374292033 52-53 0.0 54-55 0.002824950648968208 56-57 0.03516689173285626 58-59 0.05717458350447998 60-61 0.03836285819684615 62-63 0.012701482184202013 64-65 3.081346759258155E-4 66-67 0.0 68-69 0.0 70-71 0.0027511983168848767 72-73 0.00466834782888406 74-75 0.003787269794128656 76-77 0.0026537074797995846 78-79 0.007400428686259095 80-81 0.01453009466890391 82-83 0.039799561742291344 84-85 0.017584321551800796 86-87 0.0016535868323193207 88-89 9.896218245509705E-4 90-91 5.754672995886214E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 48.0 20-21 237.0 22-23 443.0 24-25 533.0 26-27 1521.0 28-29 3850.0 30-31 11179.0 32-33 14622.0 34-35 19874.0 36-37 31094.0 38-39 35606.0 40-41 35898.0 42-43 41566.0 44-45 49285.0 46-47 50309.0 48-49 46121.0 50-51 41351.0 52-53 38946.0 54-55 41849.0 56-57 42663.0 58-59 45692.0 60-61 46916.0 62-63 47221.0 64-65 52988.0 66-67 58224.0 68-69 59584.0 70-71 71569.0 72-73 49062.0 74-75 47479.0 76-77 49296.0 78-79 50977.0 80-81 51086.0 82-83 47993.0 84-85 47179.0 86-87 48984.0 88-89 50929.0 90-91 51819.0 92-93 51379.0 94-95 59280.0 96-97 176750.0 98-99 1291409.0 100-101 2726599.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.50499419055801 #Duplication Level Percentage of deduplicated Percentage of total 1 91.69939570037286 81.1585448373918 2 6.091052093352573 10.781770602731115 3 1.3414543755293387 3.5617623513936825 4 0.4475976792648285 1.5845852001216358 5 0.17936833710625505 0.7937496816779577 6 0.085300997035741 0.45297385482582375 7 0.049858832068757186 0.3088928949815354 8 0.029796033995397018 0.21096782525314256 9 0.019933712231895828 0.15878097767521757 >10 0.05404525939006413 0.7098214124102187 >50 0.001343345093101247 0.08029311606376173 >100 7.703571566969733E-4 0.13233382469661348 >500 5.55182907101678E-5 0.034297238241830265 >1k 2.7759111775288098E-5 0.031226182535631995 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.7576514963766015E-5 0.0 0.0 0.0 3 0.0 1.7576514963766015E-5 0.0 0.0 0.0 4 0.0 3.515302992753203E-5 0.0 3.515302992753203E-5 0.0 5 0.0 3.515302992753203E-5 0.0 3.515302992753203E-5 0.0 6 0.0 3.515302992753203E-5 0.0 3.515302992753203E-5 1.7576514963766015E-5 7 0.0 3.515302992753203E-5 0.0 3.515302992753203E-5 1.7576514963766015E-5 8 0.0 8.788257481883008E-5 0.0 3.515302992753203E-5 1.7576514963766015E-5 9 0.0 1.9334166460142617E-4 0.0 5.2729544891298046E-5 1.7576514963766015E-5 10-11 0.0 1.9334166460142617E-4 0.0 7.030605985506406E-5 1.7576514963766015E-5 12-13 0.0 1.9334166460142617E-4 0.0 7.030605985506406E-5 1.7576514963766015E-5 14-15 8.788257481883008E-6 2.460712094927242E-4 0.0 8.788257481883008E-5 1.7576514963766015E-5 16-17 1.7576514963766015E-5 2.460712094927242E-4 0.0 1.0545908978259609E-4 1.7576514963766015E-5 18-19 1.7576514963766015E-5 3.0758901186590527E-4 0.0 1.0545908978259609E-4 1.7576514963766015E-5 20-21 1.7576514963766015E-5 3.515302992753203E-4 0.0 1.0545908978259609E-4 3.515302992753203E-5 22-23 1.7576514963766015E-5 4.1304810164850136E-4 0.0 1.230356047463621E-4 5.2729544891298046E-5 24-25 1.7576514963766015E-5 4.6577764653979936E-4 0.0 1.5818863467389414E-4 7.030605985506406E-5 26-27 1.7576514963766015E-5 4.7456590402168236E-4 0.0 1.8455340711954316E-4 7.030605985506406E-5 28-29 1.7576514963766015E-5 4.7456590402168236E-4 0.0 5.536602213586294E-4 7.030605985506406E-5 30-31 1.7576514963766015E-5 5.272954489129805E-4 0.0 0.0018806871011229635 7.909431733694707E-5 32-33 1.7576514963766015E-5 5.272954489129805E-4 0.0 0.004728082525253058 8.788257481883008E-5 34-35 1.7576514963766015E-5 6.503310536593426E-4 0.0 0.008638857104690995 1.230356047463621E-4 36-37 1.7576514963766015E-5 7.733666584057047E-4 0.0 0.015546427485451039 1.230356047463621E-4 38-39 1.7576514963766015E-5 7.821549158875877E-4 0.0 0.033984191682441586 1.230356047463621E-4 40-41 1.7576514963766015E-5 8.964022631520668E-4 0.0 0.05288773352597194 1.230356047463621E-4 42-43 1.7576514963766015E-5 9.227670355977158E-4 0.0 0.06417185613270972 1.230356047463621E-4 44-45 1.7576514963766015E-5 0.0010106496104165458 0.0 0.0777848669721465 1.230356047463621E-4 46-47 3.515302992753203E-5 0.0010721674127897268 0.0 0.0918460789431593 1.3182386222824512E-4 48-49 3.515302992753203E-5 0.0010897439277534927 0.0 0.1052481716030309 1.5818863467389414E-4 50-51 3.515302992753203E-5 0.001283085592354919 0.0 0.11981031425051104 1.5818863467389414E-4 52-53 3.515302992753203E-5 0.001283085592354919 0.0 0.16050873464911125 1.8455340711954316E-4 54-55 3.515302992753203E-5 0.001283085592354919 0.0 0.21134880418180446 2.197064370470752E-4 56-57 3.515302992753203E-5 0.001318238622282451 0.0 0.28525804960444057 2.2849469452895817E-4 58-59 3.515302992753203E-5 0.001318238622282451 0.0 0.33319799416811235 2.548594669746072E-4 60-61 3.515302992753203E-5 0.001318238622282451 0.0 0.35059874398224067 2.8122423942025625E-4 62-63 3.515302992753203E-5 0.0013358151372462172 0.0 0.3638338597499565 3.163772693477883E-4 64-65 3.515302992753203E-5 0.0014940037719201112 0.0 0.37022292293928544 3.163772693477883E-4 66-67 3.515302992753203E-5 0.0014940037719201112 0.0 0.3763659149191217 3.163772693477883E-4 68-69 3.515302992753203E-5 0.0015027920294019943 0.0 0.3826143659887405 3.163772693477883E-4 70-71 3.515302992753203E-5 0.0015115802868838773 0.0 0.3875094254061493 3.339537843115543E-4 72-73 3.515302992753203E-5 0.0015115802868838773 0.0 0.39138504695565973 3.691068142390863E-4 74-75 3.515302992753203E-5 0.0015467333168114094 0.0 0.3947948908586303 3.691068142390863E-4 76-77 3.515302992753203E-5 0.0016434041491121224 0.0 0.3979147222646988 3.7789507172096933E-4 78-79 3.515302992753203E-5 0.0017049219514853034 0.0 0.3999711745154594 3.8668332920285234E-4 80-81 3.515302992753203E-5 0.0017049219514853034 0.0 0.4005424112517818 3.8668332920285234E-4 82-83 3.515302992753203E-5 0.0017137102089671865 0.0 0.4012894131377419 3.8668332920285234E-4 84-85 3.515302992753203E-5 0.0017400749814128354 0.0 0.4016848847244266 3.9547158668473535E-4 86-87 3.515302992753203E-5 0.0017576514963766015 0.0 0.4018254968441367 4.0425984416661836E-4 88 3.515302992753203E-5 0.0019334166460142615 0.0 0.4018342851016186 4.0425984416661836E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7320 0.0 48.89047 1 GTATCAA 14025 0.0 37.082928 1 CTTATAC 7205 0.0 33.211845 1 ATCAACG 17155 0.0 30.78093 3 TCAACGC 17180 0.0 30.711493 4 CAACGCA 17480 0.0 30.20863 5 TATCAAC 17810 0.0 29.79653 2 AACGCAG 18135 0.0 29.094206 6 TATACAC 9680 0.0 27.034552 3 ACGCAGA 20555 0.0 25.64826 7 CGCAGAG 20790 0.0 25.358343 8 TTATACA 10455 0.0 23.900475 2 GCAGAGT 23995 0.0 21.900652 9 TACACAT 12095 0.0 21.67159 5 ACACATC 11420 0.0 21.28393 6 GTGGTAT 3590 0.0 21.235214 1 ACATCTC 11780 0.0 20.705381 8 TGGTATC 3575 0.0 20.613499 2 GAGTACT 14685 0.0 19.983213 12-13 ATACACA 14670 0.0 19.455206 4 >>END_MODULE