##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140150_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6382023 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 21.695899717064638 18.0 18.0 25.0 18.0 33.0 2 28.299327344950026 29.0 27.0 31.0 25.0 33.0 3 30.24409673860467 31.0 29.0 33.0 27.0 33.0 4 31.324984413249528 33.0 31.0 33.0 29.0 33.0 5 32.29663274482088 33.0 33.0 33.0 31.0 33.0 6 35.96350404879456 38.0 36.0 38.0 33.0 38.0 7 36.093315082067235 38.0 36.0 38.0 33.0 38.0 8 35.91602929039898 38.0 36.0 38.0 31.0 38.0 9 36.786508603933264 38.0 37.0 38.0 34.0 38.0 10-11 36.916333504282264 38.0 38.0 38.0 35.0 38.0 12-13 37.082797883993834 38.0 38.0 38.0 36.0 38.0 14-15 36.984041737235984 38.0 38.0 38.0 35.5 38.0 16-17 37.07560478863834 38.0 38.0 38.0 36.0 38.0 18-19 37.20679555683206 38.0 38.0 38.0 36.0 38.0 20-21 37.26950633624725 38.0 38.0 38.0 36.0 38.0 22-23 37.25347269338842 38.0 38.0 38.0 36.5 38.0 24-25 37.32565702939644 38.0 38.0 38.0 37.0 38.0 26-27 37.311384401878726 38.0 38.0 38.0 37.0 38.0 28-29 37.294090270834495 38.0 38.0 38.0 37.0 38.0 30-31 37.29994913544323 38.0 38.0 38.0 37.0 38.0 32-33 37.278979359679724 38.0 38.0 38.0 37.0 38.0 34-35 37.18915659705516 38.0 38.0 38.0 36.0 38.0 36-37 37.2168659041853 38.0 38.0 38.0 36.0 38.0 38-39 37.19277850836298 38.0 38.0 38.0 36.0 38.0 40-41 37.205988857096045 38.0 38.0 38.0 36.0 38.0 42-43 37.18733322744242 38.0 38.0 38.0 36.0 38.0 44-45 37.150934487649 38.0 38.0 38.0 36.0 38.0 46-47 37.10607043176837 38.0 38.0 38.0 36.0 38.0 48-49 37.049529629027944 38.0 38.0 38.0 36.0 38.0 50-51 36.99831986743533 38.0 38.0 38.0 36.0 38.0 52-53 36.89767596717806 38.0 38.0 38.0 36.0 38.0 54-55 36.9245220316621 38.0 38.0 38.0 36.0 38.0 56-57 36.878739660290634 38.0 38.0 38.0 35.5 38.0 58-59 36.85549779386427 38.0 38.0 38.0 35.0 38.0 60-61 36.842383212431315 38.0 38.0 38.0 35.0 38.0 62-63 36.84896228499971 38.0 38.0 38.0 35.0 38.0 64-65 36.85722341469962 38.0 38.0 38.0 35.0 38.0 66-67 36.844559150698416 38.0 38.0 38.0 35.0 38.0 68-69 36.82083812583896 38.0 38.0 38.0 35.0 38.0 70-71 36.817604202504114 38.0 38.0 38.0 35.0 38.0 72-73 36.82689499831447 38.0 38.0 38.0 35.0 38.0 74-75 36.7557771911919 38.0 38.0 38.0 35.0 38.0 76-77 36.74574983433703 38.0 38.0 38.0 35.0 38.0 78-79 36.739059069791864 38.0 38.0 38.0 35.0 38.0 80-81 36.71004916106832 38.0 38.0 38.0 34.0 38.0 82-83 36.62707179236122 38.0 38.0 38.0 34.0 38.0 84-85 36.64091634001265 38.0 38.0 38.0 34.0 38.0 86-87 36.631890703638575 38.0 38.0 38.0 34.0 38.0 88-89 36.60428704216458 38.0 38.0 38.0 34.0 38.0 90-91 36.619634169999216 38.0 38.0 38.0 34.0 38.0 92-93 36.587402509359634 38.0 38.0 38.0 34.0 38.0 94-95 36.481280449604185 38.0 38.0 38.0 34.0 38.0 96-97 36.43908233521563 38.0 37.0 38.0 34.0 38.0 98-99 36.49056064919819 38.0 37.0 38.0 34.0 38.0 100 34.80933492566503 38.0 34.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 9.0 19 12.0 20 42.0 21 133.0 22 521.0 23 1526.0 24 3595.0 25 7339.0 26 13065.0 27 21226.0 28 33035.0 29 47738.0 30 64447.0 31 84900.0 32 112929.0 33 159743.0 34 249562.0 35 477997.0 36 1486760.0 37 3617443.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.94424651869791 17.33525560782216 18.774532777459434 23.945965096020494 2 14.31605621618911 21.05392817516784 41.74802697975891 22.88198862888414 3 18.105497269439486 25.50916848779768 31.480503909183653 24.90483033357918 4 12.56805248116467 18.092037587454637 38.420137313826665 30.919772617554024 5 13.49935592522935 36.88476208876089 35.73591007114828 13.879971914861478 6 29.81947887057129 37.778005500763626 18.68907398171395 13.71344164695113 7 26.328877222786566 32.533430230508415 22.878309902675063 18.259382644029955 8 24.272585667585343 36.6793883381492 21.264244895388188 17.78378109887727 9 25.401929764276936 16.934489267744727 21.04332748409086 36.620253483887474 10-11 24.256673785099174 26.536844195014652 28.90935993179592 20.29712208809025 12-13 25.150160066800137 23.941538599907897 28.93935825677845 21.968943076513515 14-15 22.30297509112706 25.343421670526727 26.432096844527198 25.921506393819012 16-17 21.975970628748907 28.63951602806822 27.07315533021426 22.311358012968615 18-19 22.02494412821765 27.496163833944188 28.893448049309754 21.585443988528404 20-21 22.72048938097193 26.7037374215364 28.757579983515985 21.818193213975686 22-23 22.40237631873522 26.826265774659174 28.649803016797183 22.12155488980842 24-25 22.3249345459999 26.899020074440553 28.81525086429682 21.960794515262727 26-27 22.23017449140175 27.069668826343808 28.749579377812996 21.950577304441442 28-29 22.172922528393034 26.865191203667045 28.85945732793865 22.10242894000127 30-31 22.230839325477014 26.61124723465934 28.98540044534257 22.172512994521078 32-33 21.963573316818675 27.05912629034208 28.766762246250522 22.210538146588725 34-35 22.30062416213892 26.90581155749009 28.776775666037445 22.01678861433355 36-37 22.131739992833865 26.927277030064506 28.976080567385594 21.96490240971604 38-39 21.939195440680418 26.851282766111545 28.983427577910003 22.226094215298037 40-41 22.34616063076648 26.638428284633036 28.987633933205036 22.02777715139544 42-43 22.297651320135774 26.692278608187443 28.8073003531959 22.202769718480887 44-45 22.06998442594797 27.00087791640308 28.707160608080823 22.221977049568125 46-47 22.444520726552707 26.728612322048654 28.399542438306845 22.427324513091797 48-49 22.26508663696687 26.97917692672934 28.327028202309872 22.42870823399391 50-51 22.02991923768512 27.153264281938377 28.319647934938015 22.49716854543849 52-53 22.132361015476604 26.972333098915215 28.38913864190802 22.506167243700165 54-55 22.237695411644037 26.710465896647946 28.507059339973694 22.54477935173432 56-57 22.32394910693053 26.633744346874643 28.312306207665554 22.73000033852927 58-59 21.82809577407382 26.64343665226775 28.740797244992017 22.787670328666415 60-61 22.168762158593267 27.178047859287744 28.605464393644336 22.047725588474652 62-63 21.534247068448973 27.64798516117853 28.56629345199138 22.251474318381117 64-65 21.315338225229553 27.94050701072075 28.23453287780376 22.50962188624594 66-67 21.437263991479558 28.464543661208637 27.775129749539012 22.323062597772797 68-69 21.60583062966661 28.322859404110602 27.67422433626356 22.397085629959232 70-71 21.652836977828542 27.499230142253417 27.71510914798247 23.132823731935577 72-73 22.009980673831773 26.746667235733884 27.842961478393587 23.400390612040756 74-75 22.004837302262597 26.927018650407152 27.97432536650892 23.093818680821325 76-77 22.41003655696531 26.806887750789414 27.24628410624137 23.536791586003904 78-79 22.623059435732845 26.935769075379028 26.737832420093138 23.70333906879499 80-81 22.446345142603036 27.28386734665517 26.9095857898543 23.360201720887485 82-83 22.473527842658207 27.02907648601316 26.962568548607535 23.534827122721094 84-85 22.547729010127114 27.424030942907336 26.91478700247913 23.113453044486423 86-87 22.99357028090492 27.312569984080646 26.9584083761906 22.735451358823834 88-89 22.700178032692147 27.523974603154876 27.293345756266095 22.482501607886878 90-91 22.74775378272696 27.080849491738164 27.135892746529837 23.035503979005043 92-93 22.74353502260554 26.68083656170345 27.305917692738557 23.269710722952453 94-95 21.979752901378628 27.182193766348306 27.929050012108743 22.909003320164327 96-97 22.124475699923313 26.965699779394104 28.204412138315497 22.705412382367086 98-99 23.313597504653224 28.91833089729461 28.42759777117208 19.340473826880086 100 22.357706756993917 29.884541683847964 22.161495155706547 25.596256403451573 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1449.0 1 1366.0 2 1619.0 3 2111.0 4 2696.5 5 3695.0 6 4582.5 7 6067.0 8 7544.0 9 7992.5 10 7926.5 11 7810.5 12 8469.0 13 10575.0 14 15104.0 15 20346.0 16 23852.0 17 25489.5 18 25120.0 19 23015.5 20 20476.0 21 18603.5 22 18470.0 23 20775.5 24 25463.0 25 32932.5 26 43527.0 27 56013.5 28 67525.0 29 79745.5 30 91872.0 31 104000.0 32 118861.5 33 133654.0 34 148189.0 35 162106.5 36 178074.5 37 194320.5 38 205269.0 39 214023.0 40 225638.0 41 236304.0 42 244053.5 43 252343.0 44 264517.0 45 283688.0 46 288903.5 47 281792.5 48 277589.5 49 269985.0 50 262737.5 51 255788.0 52 246634.5 53 234858.0 54 220725.5 55 205299.0 56 188327.0 57 169779.5 58 150982.0 59 131716.0 60 110413.0 61 88811.0 62 69663.0 63 53687.0 64 40048.5 65 29033.5 66 21088.0 67 16070.0 68 12231.0 69 8862.5 70 6441.5 71 4605.5 72 3076.5 73 1951.5 74 1280.5 75 842.5 76 546.5 77 325.0 78 190.5 79 108.5 80 71.0 81 49.5 82 33.5 83 24.5 84 15.5 85 9.5 86 7.5 87 6.0 88 3.0 89 1.0 90 0.5 91 0.0 92 0.0 93 0.0 94 0.5 95 1.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.014775879059038176 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.9774879968056257E-4 26-27 3.2129397779889963E-4 28-29 0.003692310297367383 30-31 0.0061210647733428575 32-33 0.004176205350387561 34-35 0.0017746801415106284 36-37 0.0 38-39 0.0 40-41 3.678316802231299E-4 42-43 0.0 44-45 0.0 46-47 4.0923710346561624E-4 48-49 0.0014695840276361056 50-51 0.0026468103729330845 52-53 0.0 54-55 0.0030310833843523954 56-57 0.03878625589554014 58-59 0.06110936787630441 60-61 0.04187713940761689 62-63 0.013522431192216649 64-65 2.483392739227578E-4 66-67 0.0 68-69 0.0 70-71 0.0026037651329456793 72-73 0.004805756866359612 74-75 0.004380897693004792 76-77 0.0029149686289065835 78-79 0.00791905434307983 80-81 0.015171904579444038 82-83 0.041719711376479125 84-85 0.019352700686507084 86-87 0.0018352992815812248 88-89 0.0012136679988857557 90-91 1.2759654052407236E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 42.0 20-21 247.0 22-23 415.0 24-25 590.0 26-27 1706.0 28-29 4431.0 30-31 13407.0 32-33 16858.0 34-35 23184.0 36-37 35752.0 38-39 22322.0 40-41 40923.0 42-43 45489.0 44-45 54014.0 46-47 53826.0 48-49 49995.0 50-51 25563.0 52-53 4334.0 54-55 3891.0 56-57 3838.0 58-59 26860.0 60-61 51449.0 62-63 50810.0 64-65 57351.0 66-67 63196.0 68-69 64621.0 70-71 76607.0 72-73 53521.0 74-75 51742.0 76-77 53827.0 78-79 55246.0 80-81 55909.0 82-83 52292.0 84-85 51105.0 86-87 53298.0 88-89 54979.0 90-91 56377.0 92-93 56633.0 94-95 67178.0 96-97 222542.0 98-99 500499.0 100-101 4205154.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.613054164668 #Duplication Level Percentage of deduplicated Percentage of total 1 90.56852152312936 78.44416260296703 2 6.773199895750505 11.732950588775243 3 1.5306147240908572 3.977136480087593 4 0.5347380772894493 1.8526119220872599 5 0.24636942935317258 1.066940436454234 6 0.12517786601859932 0.6505222373811897 7 0.06610178458178337 0.4007694213854254 8 0.04112325289294727 0.28494484241953455 9 0.027206041295769187 0.21207584955209863 >10 0.08499549591691466 1.1247511963121382 >50 0.0013207263336952602 0.07664983150388195 >100 5.512657898665581E-4 0.10825771756676646 >500 5.327839248011862E-5 0.035647805954010084 >1k 2.6639164546962925E-5 0.032579067553523355 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.5669012787951408E-5 2 0.0 0.0 0.0 0.0 1.5669012787951408E-5 3 0.0 1.5669012787951408E-5 0.0 0.0 1.5669012787951408E-5 4 0.0 4.700703836385422E-5 0.0 0.0 1.5669012787951408E-5 5 0.0 6.267605115180563E-5 0.0 0.0 1.5669012787951408E-5 6 1.8802815345541688E-4 6.267605115180563E-5 0.0 0.0 6.267605115180563E-5 7 1.8802815345541688E-4 7.834506393975704E-5 0.0 0.0 6.267605115180563E-5 8 2.036971662433683E-4 1.2535210230361126E-4 0.0 0.0 6.267605115180563E-5 9 2.036971662433683E-4 1.8802815345541688E-4 0.0 0.0 7.834506393975704E-5 10-11 2.036971662433683E-4 1.8802815345541688E-4 0.0 0.0 7.834506393975704E-5 12-13 2.350351918192711E-4 1.8802815345541688E-4 0.0 0.0 7.834506393975704E-5 14-15 2.507042046072225E-4 2.272006854252954E-4 0.0 0.0 9.401407672770844E-5 16-17 3.6038729412288234E-4 2.350351918192711E-4 0.0 0.0 1.4102111509156265E-4 18-19 3.6038729412288234E-4 2.4286969821324682E-4 0.0 0.0 1.4102111509156265E-4 20-21 3.6038729412288234E-4 2.5853871100119824E-4 0.0 0.0 1.4102111509156265E-4 22-23 3.6038729412288234E-4 2.89876736577101E-4 0.0 0.0 1.723591406674655E-4 24-25 3.6822180051685805E-4 3.2904926854697956E-4 0.0 3.1338025575902816E-5 1.8802815345541688E-4 26-27 3.7605630691083376E-4 3.447182813349309E-4 0.0 1.6452463427348978E-4 1.8802815345541688E-4 28-29 3.7605630691083376E-4 3.5255278772890663E-4 0.0 6.267605115180563E-4 1.8802815345541688E-4 30-31 3.7605630691083376E-4 4.2306334527468796E-4 0.0 0.0021466547519493426 1.8802815345541688E-4 32-33 3.7605630691083376E-4 4.2306334527468796E-4 0.0 0.0057348586803902145 2.036971662433683E-4 34-35 3.8389081330480947E-4 4.622358772445665E-4 0.0 0.010388555478411783 2.193661790313197E-4 36-37 3.917253196987852E-4 5.01408409214445E-4 0.0 0.021873941851980164 2.272006854252954E-4 38-39 3.917253196987852E-4 5.01408409214445E-4 0.0 0.18852956186463132 2.350351918192711E-4 40-41 3.917253196987852E-4 5.484154475782992E-4 0.0 0.36184451231216186 2.507042046072225E-4 42-43 3.917253196987852E-4 5.484154475782992E-4 0.0 0.387573031309978 2.507042046072225E-4 44-45 4.152288388807123E-4 6.267605115180563E-4 0.0 0.42102637361225426 2.507042046072225E-4 46-47 4.387323580626394E-4 6.894365626698619E-4 0.0 0.4591960887637039 2.820422301831253E-4 48-49 4.387323580626394E-4 6.894365626698619E-4 0.0 0.4964726701862403 2.977112429710767E-4 50-51 4.622358772445665E-4 7.521126138216675E-4 0.0 0.5350497796701768 2.977112429710767E-4 52-53 4.700703836385422E-4 7.521126138216675E-4 0.0 1.0407514983885204 3.368837749409552E-4 54-55 4.700703836385422E-4 7.599471202156432E-4 0.0 1.714824594019796 3.7605630691083376E-4 56-57 4.700703836385422E-4 7.677816266096189E-4 0.0 2.4514875612325433 3.7605630691083376E-4 58-59 4.700703836385422E-4 7.677816266096189E-4 0.0 3.2011088020209266 3.7605630691083376E-4 60-61 4.700703836385422E-4 7.677816266096189E-4 0.0 3.398710722289782 3.917253196987852E-4 62-63 5.170774220023965E-4 7.677816266096189E-4 0.0 3.4064747181262116 4.073943324867366E-4 64-65 5.170774220023965E-4 9.24471754489133E-4 0.0 3.4137843125917913 4.152288388807123E-4 66-67 5.170774220023965E-4 9.24471754489133E-4 0.0 3.4202712838860028 4.2306334527468796E-4 68-69 5.170774220023965E-4 9.79313299246963E-4 0.0 3.42641353689888 4.3089785166866367E-4 70-71 5.327464347903478E-4 0.00100281681842889 0.0 3.4315138005613584 4.700703836385422E-4 72-73 5.79753473154202E-4 0.00100281681842889 0.0 3.435368377707194 5.170774220023965E-4 74-75 5.79753473154202E-4 0.0010106513248228657 0.0 3.438306317604935 5.170774220023965E-4 76-77 5.79753473154202E-4 0.0010419893503987685 0.0 3.4413696096049797 5.170774220023965E-4 78-79 5.79753473154202E-4 0.0010654928695806956 0.0 3.4434535883057773 5.170774220023965E-4 80-81 5.79753473154202E-4 0.0010654928695806956 0.0 3.4441821974004165 5.249119283963721E-4 82-83 5.79753473154202E-4 0.0010654928695806956 0.0 3.444699274822419 5.484154475782992E-4 84-85 5.79753473154202E-4 0.0010654928695806956 0.0 3.444902971988663 5.484154475782992E-4 86-87 5.79753473154202E-4 0.001081161882368647 0.0 3.4450204895845724 5.484154475782992E-4 88 5.79753473154202E-4 0.001159506946308404 0.0 3.44503615859736 5.640844603662506E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7385 0.0 50.875614 1 GTATCAA 14390 0.0 38.80419 1 TCAACGC 17865 0.0 31.97691 4 ATCAACG 18045 0.0 31.586151 3 CAACGCA 18425 0.0 31.00502 5 TATCAAC 18925 0.0 30.509594 2 AACGCAG 18965 0.0 30.122198 6 ACGCAGA 21400 0.0 26.674564 7 CGCAGAG 22015 0.0 25.870558 8 GCAGAGT 25645 0.0 22.107603 9 GTGGTAT 3640 0.0 21.71154 1 ATCTCGT 12605 0.0 21.51586 94 TGGTATC 3695 0.0 20.803982 2 GAGTACT 15065 0.0 20.679825 12-13 AGAGTAC 23075 0.0 19.929094 10-11 TACATGG 17965 0.0 19.25512 2 CAGAGTA 25010 0.0 19.19002 10-11 GTACATG 18125 0.0 19.085142 1 ACATGGG 17915 0.0 18.9446 3 GTACTTT 16795 0.0 18.549807 14-15 >>END_MODULE