##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140149_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6621304 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.738041026359763 31.0 25.0 32.0 18.0 33.0 2 29.404317487914767 31.0 28.0 33.0 18.0 33.0 3 29.774322097278723 31.0 29.0 33.0 25.0 33.0 4 30.807085281086625 33.0 31.0 33.0 28.0 33.0 5 31.83531083907339 33.0 32.0 33.0 30.0 33.0 6 34.756756071009576 37.0 34.0 38.0 29.0 38.0 7 36.191573442331 38.0 36.0 38.0 33.0 38.0 8 36.003104071343046 38.0 36.0 38.0 33.0 38.0 9 36.55986660633615 38.0 37.0 38.0 34.0 38.0 10-11 36.87876157022846 38.0 38.0 38.0 35.0 38.0 12-13 37.063724305665474 38.0 38.0 38.0 36.0 38.0 14-15 37.09437423504494 38.0 38.0 38.0 36.0 38.0 16-17 37.154268101872375 38.0 38.0 38.0 36.0 38.0 18-19 37.225285985962884 38.0 38.0 38.0 36.0 38.0 20-21 37.27402614606694 38.0 38.0 38.0 36.5 38.0 22-23 37.227861316737794 38.0 38.0 38.0 36.5 38.0 24-25 37.298125132503344 38.0 38.0 38.0 37.0 38.0 26-27 37.279717973486555 38.0 38.0 38.0 37.0 38.0 28-29 37.26423440400319 38.0 38.0 38.0 37.0 38.0 30-31 37.26034180042394 38.0 38.0 38.0 37.0 38.0 32-33 37.22475264227974 38.0 38.0 38.0 36.5 38.0 34-35 37.13440427612787 38.0 38.0 38.0 36.0 38.0 36-37 37.148399712265686 38.0 38.0 38.0 36.0 38.0 38-39 37.083819468276545 38.0 38.0 38.0 36.0 38.0 40-41 37.18575037457266 38.0 38.0 38.0 36.0 38.0 42-43 37.1725383759634 38.0 38.0 38.0 36.0 38.0 44-45 37.13340221881162 38.0 38.0 38.0 36.0 38.0 46-47 37.09308214075736 38.0 38.0 38.0 36.0 38.0 48-49 37.03862225706111 38.0 38.0 38.0 36.0 38.0 50-51 37.00215407300766 38.0 38.0 38.0 36.0 38.0 52-53 36.90997454168913 38.0 38.0 38.0 36.0 38.0 54-55 36.93230937875552 38.0 38.0 38.0 36.0 38.0 56-57 36.88802263835859 38.0 38.0 38.0 36.0 38.0 58-59 36.85402430223792 38.0 38.0 38.0 35.0 38.0 60-61 36.82993571283858 38.0 38.0 38.0 35.0 38.0 62-63 36.833263011481236 38.0 38.0 38.0 35.0 38.0 64-65 36.83770193364524 38.0 38.0 38.0 35.0 38.0 66-67 36.820744827988875 38.0 38.0 38.0 35.0 38.0 68-69 36.7917358523101 38.0 38.0 38.0 35.0 38.0 70-71 36.78871573001128 38.0 38.0 38.0 35.0 38.0 72-73 36.79272866194058 38.0 38.0 38.0 35.0 38.0 74-75 36.73566093137751 38.0 38.0 38.0 35.0 38.0 76-77 36.73692985380912 38.0 38.0 38.0 35.0 38.0 78-79 36.74145040165938 38.0 38.0 38.0 35.0 38.0 80-81 36.72443390004247 38.0 38.0 38.0 35.0 38.0 82-83 36.67110995788228 38.0 38.0 38.0 34.0 38.0 84-85 36.66448801570558 38.0 38.0 38.0 34.0 38.0 86-87 36.65780083584157 38.0 38.0 38.0 34.0 38.0 88-89 36.63783137517191 38.0 38.0 38.0 34.0 38.0 90-91 36.645841113394056 38.0 38.0 38.0 34.0 38.0 92-93 36.61731591524526 38.0 38.0 38.0 34.0 38.0 94-95 36.55401153564955 38.0 38.0 38.0 34.0 38.0 96-97 36.56984458454057 38.0 38.0 38.0 34.0 38.0 98-99 36.59957734176179 38.0 38.0 38.0 34.0 38.0 100 34.97157527452148 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 12.0 19 17.0 20 39.0 21 151.0 22 549.0 23 1699.0 24 4112.0 25 8067.0 26 14869.0 27 24013.0 28 35599.0 29 51145.0 30 68647.0 31 90257.0 32 119616.0 33 165158.0 34 254160.0 35 477309.0 36 1398679.0 37 3907204.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.90197399183001 18.385623134053354 14.12865199966653 27.583750874450107 2 13.556636768570549 19.857306669812722 43.94202900302133 22.6440275585954 3 17.548235211674317 25.556174433314045 31.313786529058323 25.581803825953315 4 11.8511247935452 18.756441329381644 38.26207043204783 31.13036344502533 5 13.10504698168216 36.657341212546655 36.3192205039974 13.918391301773788 6 28.894142301878905 37.901325781145225 18.749645085016486 14.454886831959385 7 25.58237773103304 32.456401337259244 22.346232705823503 19.614988225884204 8 23.665398839865983 36.906853997339496 21.576686404974005 17.851060757820512 9 24.524157175082127 16.97387704899216 20.52586620399849 37.97609957192722 10-11 23.73845091540881 26.509294845849098 29.03280078969339 20.719453449048707 12-13 24.847990667699293 23.56569793502911 28.78726003216285 22.799051365108745 14-15 22.030532052296646 25.11628374108786 25.745721688658307 27.107462517957188 16-17 22.161608951952665 28.910521250798936 26.31045183848982 22.617417958758576 18-19 22.32333691369555 27.22922101145031 28.117354225089198 22.33008784976494 20-21 22.51227834674906 26.402172171275666 28.100087159308824 22.98546232266645 22-23 22.183785090046122 27.40863136312404 28.003504048724402 22.404079498105432 24-25 22.800150534926907 27.35053166425757 28.31429656604093 21.535021234774597 26-27 22.9482106500963 27.486911073857694 28.282066075113825 21.28281220093218 28-29 22.78963551714731 26.965935101452626 28.216608593340876 22.027820788059188 30-31 22.18728891729553 27.60058431324129 28.937380916065646 21.27474585339754 32-33 22.61674890206809 27.57374585798936 28.415688938669238 21.39381630127332 34-35 23.21526621394334 26.728502171444045 28.724770132736126 21.331461481876488 36-37 21.707833912515547 27.862191868364246 28.53395256752104 21.896021651599167 38-39 21.67562902680465 26.412478133653444 29.24419740655845 22.667695432983457 40-41 21.92913215720472 26.220384814861102 29.39594445778854 22.454538570145637 42-43 22.52542438031862 26.110321846578046 29.314043657898438 22.050210115204898 44-45 21.70671853045203 26.88931406601881 29.1794074406382 22.224559962890964 46-47 22.696296867346344 25.990851143749794 28.238734134326197 23.074117854577665 48-49 22.365635347922243 26.090731318387007 28.362471087232098 23.18116224645865 50-51 21.66921479446577 26.42055267250048 29.07756590310509 22.832666629928656 52-53 21.868239059854037 26.609215505815442 29.695382006629966 21.82716342770055 54-55 21.8084549458428 26.757871034705254 28.668413115871182 22.76526090358076 56-57 22.57408147111493 27.467888217141013 27.5828108197221 22.375219492021962 58-59 21.39346202403955 28.35478201547034 28.894683968709895 21.357071991780213 60-61 22.198157559267955 29.490592567051944 27.03054406692655 21.28070580675356 62-63 21.279864716650454 30.333144064593938 27.00784942504746 21.37914179370815 64-65 21.2831641436277 30.129044274227635 27.056639102788438 21.531152479356233 66-67 21.422425291779447 29.78174378448867 27.064478283511338 21.73135264022055 68-69 21.569868231969842 29.22157590371922 27.3731703769449 21.83538548736604 70-71 21.8300240997456 28.21680799166805 27.731957574214768 22.221210334371584 72-73 22.17709066039537 27.483007190320848 27.96502734410149 22.374874805182294 74-75 22.11503237749273 27.520279170270744 27.91039696612191 22.454291486114613 76-77 22.268685155753694 27.41237659295683 27.803917149369497 22.515021101919984 78-79 22.284038094891752 27.406358517919156 27.787680565673007 22.521922821516092 80-81 22.28182812428679 27.45982558479466 27.732224344579357 22.526121946339188 82-83 22.353146528548717 27.418730635185263 27.830966683815365 22.397156152450652 84-85 22.481386138420554 27.415594545335626 27.72907471999891 22.373944596244915 86-87 22.32751861097216 27.422417935531247 27.87389141196967 22.376172041526925 88-89 22.43182570260064 27.40397680870427 27.774824034286038 22.389373454409046 90-91 22.50112910078484 27.376911909605102 27.79797314456305 22.32398584504701 92-93 22.505253626709457 27.40577230882075 27.797386410388253 22.29158765408154 94-95 22.364383791159202 27.54470077460279 27.763293011779076 22.32762242245893 96-97 22.454199916948152 27.548053630454405 27.87658005829106 22.12116639430638 98-99 23.476277332002173 29.502422553033618 28.07821729785347 18.94308281711074 100 22.319264377334402 30.386246946167244 21.972883786148802 25.32160489034955 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1352.0 1 1215.0 2 1499.5 3 2110.0 4 2714.5 5 3842.5 6 4920.5 7 6249.0 8 7879.5 9 8599.5 10 8239.0 11 7985.5 12 8842.5 13 10896.5 14 15003.0 15 20036.5 16 24029.0 17 26470.5 18 26433.5 19 24468.5 20 22064.5 21 20122.5 22 20126.5 23 22948.0 24 28256.5 25 36192.0 26 46976.5 27 58781.0 28 71154.5 29 85476.5 30 99536.0 31 113056.0 32 127873.5 33 143526.5 34 158811.0 35 172541.0 36 187799.5 37 204180.0 38 216473.0 39 226232.0 40 237605.5 41 247664.5 42 261375.5 43 298472.0 44 348953.5 45 365571.0 46 345056.5 47 317375.5 48 291361.0 49 275070.0 50 268282.5 51 261074.5 52 250056.5 53 237092.0 54 223283.5 55 206698.5 56 189395.5 57 171794.5 58 153228.0 59 133479.0 60 111494.0 61 90438.0 62 71744.5 63 55774.0 64 42678.5 65 31724.5 66 23077.5 67 17493.0 68 13365.5 69 9628.0 70 6947.5 71 5082.5 72 3537.5 73 2340.5 74 1544.5 75 992.0 76 640.0 77 397.5 78 246.5 79 161.5 80 113.5 81 70.0 82 43.0 83 25.0 84 15.5 85 11.5 86 6.5 87 4.5 88 3.0 89 3.0 90 3.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.020736096696360715 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.945436914027983E-4 26-27 3.021354784549456E-4 28-29 0.0033777358243341615 30-31 0.005764722169895895 32-33 0.004421184983744751 34-35 0.0019397705061317667 36-37 0.0 38-39 7.689602135371754E-6 40-41 3.871580001090237E-4 42-43 0.0 44-45 7.859418888714323E-6 46-47 3.4897381078449627E-4 48-49 0.0013683015736668362 50-51 0.002565677925931783 52-53 0.0 54-55 0.0028405393259162788 56-57 0.03830385830541718 58-59 0.060746244246629756 60-61 0.0417981844049984 62-63 0.013714309737939714 64-65 2.9998844615927364E-4 66-67 0.0 68-69 8.836730187145155E-6 70-71 0.00259420896893705 72-73 0.004806735237854355 74-75 0.0038999115555772216 76-77 0.003093752513673917 78-79 0.00791655271628666 80-81 0.01584419568079189 82-83 0.04221245867804344 84-85 0.018290807044283663 86-87 0.0018037717162286621 88-89 0.0012646885609815894 90-91 9.058968449223374E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 55.0 20-21 244.0 22-23 467.0 24-25 681.0 26-27 1993.0 28-29 5099.0 30-31 15202.0 32-33 18937.0 34-35 25482.0 36-37 39785.0 38-39 45038.0 40-41 44022.0 42-43 48601.0 44-45 56997.0 46-47 56563.0 48-49 52862.0 50-51 46460.0 52-53 43525.0 54-55 46101.0 56-57 47143.0 58-59 51278.0 60-61 59440.0 62-63 64816.0 64-65 79137.0 66-67 90632.0 68-69 90452.0 70-71 133594.0 72-73 59408.0 74-75 50935.0 76-77 52811.0 78-79 54023.0 80-81 54020.0 82-83 50482.0 84-85 49614.0 86-87 51234.0 88-89 53029.0 90-91 54232.0 92-93 54005.0 94-95 63476.0 96-97 198099.0 98-99 437886.0 100-101 4173444.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.95584009539596 #Duplication Level Percentage of deduplicated Percentage of total 1 90.13887974291694 77.47963133560295 2 6.9750622332994245 11.990946679618414 3 1.6834715438366388 4.341126324815145 4 0.5683723626228933 1.9541969566502326 5 0.26010131405533043 1.1178613479771176 6 0.1355178668933657 0.6989131258053177 7 0.06802906457399505 0.40932467774531783 8 0.048639335336428294 0.3344667944419498 9 0.026717358716457078 0.20668617122428062 >10 0.09269280765095993 1.2186097721227918 >50 0.001819955265279207 0.10444820722862931 >100 6.155110406380331E-4 0.09156293865559388 >500 5.393590181965113E-5 0.02793252895859617 >1k 2.6967889867545788E-5 0.024293139153649355 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.5102765255907296E-5 2 0.0 1.5102765255907296E-5 0.0 1.5102765255907296E-5 1.5102765255907296E-5 3 0.0 1.5102765255907296E-5 0.0 1.5102765255907296E-5 1.5102765255907296E-5 4 0.0 6.0411061023629185E-5 0.0 3.0205530511814593E-5 3.0205530511814593E-5 5 0.0 7.551382627953647E-5 0.0 4.5308295767721885E-5 3.0205530511814593E-5 6 0.0 7.551382627953647E-5 0.0 4.5308295767721885E-5 3.0205530511814593E-5 7 0.0 7.551382627953647E-5 0.0 4.5308295767721885E-5 3.0205530511814593E-5 8 0.0 7.551382627953647E-5 0.0 4.5308295767721885E-5 4.5308295767721885E-5 9 0.0 2.1143871358270214E-4 0.0 6.0411061023629185E-5 4.5308295767721885E-5 10-11 0.0 2.1143871358270214E-4 0.0 1.5102765255907294E-4 4.5308295767721885E-5 12-13 0.0 2.1143871358270214E-4 0.0 2.1143871358270214E-4 4.5308295767721885E-5 14-15 0.0 2.6429839197837765E-4 0.0 2.1143871358270214E-4 5.2859678395675535E-5 16-17 0.0 2.7184977460633134E-4 0.0 2.4164424409451674E-4 6.0411061023629185E-5 18-19 0.0 2.945039224901923E-4 0.0 2.9450392249019225E-4 6.0411061023629185E-5 20-21 0.0 3.171580703740532E-4 0.0 3.322608356299605E-4 6.0411061023629185E-5 22-23 0.0 4.153260445374506E-4 0.0 3.398122182579141E-4 6.0411061023629185E-5 24-25 0.0 6.343161407481063E-4 0.0 4.0777466190949696E-4 6.0411061023629185E-5 26-27 0.0 6.64521671259921E-4 0.0 5.285967839567553E-4 7.551382627953647E-5 28-29 0.0 6.64521671259921E-4 0.0 0.0011251560115650935 7.551382627953647E-5 30-31 0.0 7.551382627953648E-4 0.0 0.0030885154948330417 7.551382627953647E-5 32-33 1.5102765255907296E-5 7.551382627953648E-4 0.0 0.0074683174190461575 1.0571935679135107E-4 34-35 1.5102765255907296E-5 8.38203471702855E-4 0.0 0.012739182493357804 1.1327073941930472E-4 36-37 1.5102765255907296E-5 9.43922828494206E-4 0.0 0.021023049236222956 1.2082212204725837E-4 38-39 1.5102765255907296E-5 9.66576976378067E-4 0.0 0.042967367153056255 1.2082212204725837E-4 40-41 1.5102765255907296E-5 0.001026988037401696 0.0 0.0660292896988267 1.2082212204725837E-4 42-43 1.5102765255907296E-5 0.0010420908026576034 0.0 0.07967463810753894 1.2082212204725837E-4 44-45 1.5102765255907296E-5 0.0011629129247048616 0.0 0.09575908310508022 1.2082212204725837E-4 46-47 1.5102765255907296E-5 0.0012610808988682593 0.0 0.11316502006251336 1.434762699311193E-4 48-49 1.5102765255907296E-5 0.0012686322814962128 0.0 0.12914374570326329 1.5102765255907294E-4 50-51 1.5102765255907296E-5 0.0014649682298230077 0.0 0.14471469668210368 1.5102765255907294E-4 52-53 1.5102765255907296E-5 0.0014649682298230077 0.0 0.18489560364544508 1.8123318307088754E-4 54-55 1.5102765255907296E-5 0.0014725196124509613 0.0 0.23542945619171088 2.1143871358270214E-4 56-57 1.5102765255907296E-5 0.0014951737603348223 0.0 0.30050727167941543 2.1143871358270214E-4 58-59 1.5102765255907296E-5 0.0015102765255907296 0.0 0.3430744155531901 2.1143871358270214E-4 60-61 1.5102765255907296E-5 0.0015102765255907296 0.0 0.3621038997756333 2.1143871358270214E-4 62-63 1.5102765255907296E-5 0.0015178279082186832 0.0 0.37844509178252506 2.1143871358270214E-4 64-65 1.5102765255907296E-5 0.0016008931171261733 0.0 0.3846447769200749 2.1143871358270214E-4 66-67 1.5102765255907296E-5 0.0016159958823820807 0.0 0.3906934344050658 2.1143871358270214E-4 68-69 1.5102765255907296E-5 0.0016310986476379878 0.0 0.3966816808290331 2.1143871358270214E-4 70-71 1.5102765255907296E-5 0.0016386500302659414 0.0 0.40155232262406315 2.1143871358270214E-4 72-73 1.5102765255907296E-5 0.0016613041781498026 0.0 0.40566782615629793 2.1143871358270214E-4 74-75 1.5102765255907296E-5 0.00167640694340571 0.0 0.40868837920747936 2.1143871358270214E-4 76-77 1.5102765255907296E-5 0.0017896776828250146 0.0 0.41185995991121993 2.1143871358270214E-4 78-79 1.5102765255907296E-5 0.001827434595964783 0.0 0.41385352492499966 2.1143871358270214E-4 80-81 1.5102765255907296E-5 0.00184253736122069 0.0 0.41463131733567893 2.1143871358270214E-4 82-83 1.5102765255907296E-5 0.0018500887438486439 0.0 0.41520522241540336 2.1143871358270214E-4 84-85 1.5102765255907296E-5 0.0018953970396163656 0.0 0.41543176389424197 2.1143871358270214E-4 86-87 1.5102765255907296E-5 0.0019558081006399945 0.0 0.41556768878154515 2.1143871358270214E-4 88 1.5102765255907296E-5 0.002114387135827021 0.0 0.41556768878154515 2.1143871358270214E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 16365 0.0 55.60807 1 TATACAC 19685 0.0 47.461365 3 GGTATCA 8060 0.0 47.41862 1 TTATACA 19910 0.0 46.27779 2 GTATCAA 15435 0.0 39.35118 1 TACACAT 26870 0.0 35.06785 5 ATACACA 29155 0.0 33.19995 4 ATCAACG 18125 0.0 32.71566 3 TCAACGC 18330 0.0 32.510487 4 ACACATC 28495 0.0 32.506786 6 CAACGCA 18685 0.0 31.847769 5 TATCAAC 19245 0.0 31.12326 2 AACGCAG 19305 0.0 30.824944 6 ACATCTC 30280 0.0 30.7434 8 CACATCT 31360 0.0 29.510178 7 CATCTCC 33650 0.0 27.46439 9 ACGCAGA 21815 0.0 27.201107 7 CGCAGAG 22290 0.0 26.58369 8 GCAGAGT 26200 0.0 22.696743 9 GTGGTAT 3780 0.0 22.048117 1 >>END_MODULE