##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140148_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6347636 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.85642135119279 31.0 25.0 32.0 18.0 33.0 2 29.534269135785355 31.0 28.0 33.0 18.0 33.0 3 29.890196602325652 31.0 29.0 33.0 25.0 33.0 4 30.897720348173713 33.0 31.0 33.0 28.0 33.0 5 31.896885234124955 33.0 32.0 33.0 30.0 33.0 6 34.86291904576759 37.0 34.0 38.0 29.0 38.0 7 36.27714427859443 38.0 37.0 38.0 33.0 38.0 8 36.09561874688467 38.0 36.0 38.0 33.0 38.0 9 36.629972008476855 38.0 37.0 38.0 34.0 38.0 10-11 36.936220192840295 38.0 38.0 38.0 35.0 38.0 12-13 37.1099155654168 38.0 38.0 38.0 36.0 38.0 14-15 37.139510677675915 38.0 38.0 38.0 36.0 38.0 16-17 37.201735654029314 38.0 38.0 38.0 36.0 38.0 18-19 37.25866164978584 38.0 38.0 38.0 36.0 38.0 20-21 37.302960821376004 38.0 38.0 38.0 37.0 38.0 22-23 37.252943852377 38.0 38.0 38.0 36.5 38.0 24-25 37.32631518031883 38.0 38.0 38.0 37.0 38.0 26-27 37.30539601434013 38.0 38.0 38.0 37.0 38.0 28-29 37.290046096548025 38.0 38.0 38.0 37.0 38.0 30-31 37.29026357742896 38.0 38.0 38.0 37.0 38.0 32-33 37.26679716662441 38.0 38.0 38.0 37.0 38.0 34-35 37.1784649389213 38.0 38.0 38.0 36.0 38.0 36-37 37.1967541509793 38.0 38.0 38.0 36.0 38.0 38-39 37.14205185605171 38.0 38.0 38.0 36.0 38.0 40-41 37.214183636075774 38.0 38.0 38.0 37.0 38.0 42-43 37.197361381206036 38.0 38.0 38.0 37.0 38.0 44-45 37.15809315756786 38.0 38.0 38.0 36.0 38.0 46-47 37.119494313321475 38.0 38.0 38.0 36.0 38.0 48-49 37.06315920118843 38.0 38.0 38.0 36.0 38.0 50-51 37.02934015558577 38.0 38.0 38.0 36.0 38.0 52-53 36.93869991012719 38.0 38.0 38.0 36.0 38.0 54-55 36.9688252579754 38.0 38.0 38.0 36.0 38.0 56-57 36.92661580934984 38.0 38.0 38.0 36.0 38.0 58-59 36.898330373503285 38.0 38.0 38.0 36.0 38.0 60-61 36.88221333670384 38.0 38.0 38.0 35.5 38.0 62-63 36.88632621627197 38.0 38.0 38.0 35.0 38.0 64-65 36.893505503623786 38.0 38.0 38.0 35.0 38.0 66-67 36.88215563637615 38.0 38.0 38.0 35.0 38.0 68-69 36.85560692443316 38.0 38.0 38.0 35.0 38.0 70-71 36.851666525971496 38.0 38.0 38.0 35.0 38.0 72-73 36.85481930273875 38.0 38.0 38.0 35.0 38.0 74-75 36.79618324796713 38.0 38.0 38.0 35.0 38.0 76-77 36.801815376923756 38.0 38.0 38.0 35.0 38.0 78-79 36.809311740866775 38.0 38.0 38.0 35.0 38.0 80-81 36.79538980141064 38.0 38.0 38.0 35.0 38.0 82-83 36.742662484717115 38.0 38.0 38.0 35.0 38.0 84-85 36.73838086994746 38.0 38.0 38.0 35.0 38.0 86-87 36.730482732628616 38.0 38.0 38.0 35.0 38.0 88-89 36.71129993526609 38.0 38.0 38.0 34.5 38.0 90-91 36.71798625362746 38.0 38.0 38.0 34.5 38.0 92-93 36.69054538904946 38.0 38.0 38.0 34.0 38.0 94-95 36.62420121393916 38.0 38.0 38.0 34.0 38.0 96-97 36.645432946855735 38.0 38.0 38.0 34.0 38.0 98-99 36.67148388430532 38.0 38.0 38.0 34.0 38.0 100 35.13405655629812 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 13.0 19 15.0 20 31.0 21 123.0 22 461.0 23 1413.0 24 3598.0 25 7331.0 26 13126.0 27 21448.0 28 32700.0 29 46789.0 30 63266.0 31 83117.0 32 109698.0 33 151974.0 34 232257.0 35 432778.0 36 1260047.0 37 3887450.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.46207123407832 18.157499894448893 14.332406584120449 27.04802228735233 2 13.685291783766953 19.916639512215724 43.748136742461725 22.6499319615556 3 17.82668382371012 25.298693875956342 31.047416707574282 25.827205592759256 4 12.00736778227359 18.390657561334645 38.66070770283614 30.941266953555623 5 13.273760499184265 36.559358476131905 36.17570383682997 13.991177187853873 6 29.25613567003527 37.894375165809755 18.73946458177501 14.11002458237996 7 25.925982523257478 32.48557415705626 22.52203812568963 19.06640519399663 8 23.80314498184836 36.851356946113484 21.482375485928934 17.863122586109224 9 24.782769522385973 17.033963510194976 20.801696883690244 37.38157008372881 10-11 23.821348609151503 26.567607216292803 29.042843666524043 20.56820050803165 12-13 24.95114716722887 23.73451313213297 28.94071903303844 22.373620667599717 14-15 22.062646629390848 25.253165115327974 26.140290653087227 26.54389760219395 16-17 21.994211703380596 28.94818637993735 26.69664738179694 22.360954534885114 18-19 22.035565681459996 27.44851784191784 28.581333271157956 21.934583205464207 20-21 22.45273679338351 26.650490316087904 28.52880912252908 22.3679637679995 22-23 22.13909096645343 27.297585081527792 28.363450196831145 22.199873755187628 24-25 22.323037763587745 27.51545525069645 28.51909820795432 21.64240877776149 26-27 22.214004230335423 27.86487036964811 28.463215819201025 21.45790958081544 28-29 21.906620625876645 27.54213219432669 28.566604409756724 21.98464277003994 30-31 22.76201837442802 27.193258532309137 28.507566623361473 21.537156469901365 32-33 22.179275840255386 27.35216412032556 28.730660186053935 21.737899853365114 34-35 22.16096989038369 26.816588763729015 28.951743339056847 22.07069800683045 36-37 21.740175294975014 27.604050216230284 28.787097672789407 21.868676816005294 38-39 21.700119868147443 26.6283132429165 29.33311245114044 22.338454437795615 40-41 21.953637558849188 26.480383739278174 29.35949399892706 22.206484702945577 42-43 22.335756966088216 26.39061659740299 29.299870012738623 21.973756423770176 44-45 21.787499746037696 27.022932632157065 29.18672422708621 22.002843394719026 46-47 22.50465034113524 26.361734458618617 28.390665358790084 22.74294984145606 48-49 22.260357755004893 26.461488825546535 28.504100362179123 22.774053057269445 50-51 21.750013561856573 26.759565734634204 28.955350162931516 22.535070540577706 52-53 21.92169617314042 26.865267123089794 29.354992604142478 21.858044099627314 54-55 21.84463339293286 26.91239944659735 28.685417833419933 22.557549327049852 56-57 22.432226275272352 27.424278090402467 27.862957003428946 22.28053863089624 58-59 21.566896385710166 28.044812122866535 28.851172964964277 21.53711852645902 60-61 22.149820152804732 28.789703554548197 27.572036186184594 21.488440106462473 62-63 21.425037896563303 29.432785638394225 27.57092827777466 21.571248187267813 64-65 21.45635454875355 29.25003327161556 27.620192095555545 21.673420084075346 66-67 21.63284582329668 29.05290690581872 27.506254786734512 21.807992484150088 68-69 21.715113880272614 28.659046776348735 27.78072661397551 21.84511272940314 70-71 21.860019745740367 27.943763581237512 28.046005363116322 22.1502113099058 72-73 22.10362566250256 27.437161823402175 28.164760021363072 22.294452492732198 74-75 22.037231783911924 27.534764226450136 28.103005058836466 22.32499893080147 76-77 22.212385244404782 27.444589905795976 27.94880381461018 22.394221035189066 78-79 22.217838655813594 27.496505963369998 27.877876240920813 22.407779139895602 80-81 22.232260890766927 27.5322057830009 27.862675341886007 22.37285798434617 82-83 22.280097739969424 27.456635019209003 27.940922316362144 22.32234492445943 84-85 22.425295948443065 27.445672265986364 27.87040419258246 22.258627592988113 86-87 22.193893597252444 27.52303567613909 27.932015216627885 22.351055509980583 88-89 22.338212453908113 27.52968569674785 27.8578504085841 22.274251440759933 90-91 22.4105274445443 27.520020118612535 27.8522005818225 22.217251855020663 92-93 22.452295847594247 27.49470592674872 27.827267179421888 22.22573104623515 94-95 22.275096737530355 27.620496707551922 27.838464021756987 22.265942533160736 96-97 22.330078633208508 27.650145742538445 27.98521988206791 22.034555742185137 98-99 23.380855014033326 29.578092147943817 28.19427870346943 18.846774134553428 100 29.730365037447935 40.66496515842222 29.604669804129845 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1331.0 1 1198.5 2 1523.5 3 2145.0 4 2703.5 5 3745.5 6 4753.0 7 6153.0 8 7905.5 9 8641.0 10 8288.5 11 8179.5 12 9155.0 13 11190.5 14 15256.0 15 20280.5 16 24230.5 17 26313.0 18 25969.0 19 23873.0 20 21560.0 21 19926.0 22 20063.5 23 22805.0 24 28224.0 25 36409.5 26 47492.5 27 60232.0 28 72820.0 29 86393.5 30 99826.0 31 113234.5 32 127947.5 33 143396.0 34 158253.0 35 172200.5 36 187644.0 37 201880.0 38 212269.5 39 221414.0 40 232796.0 41 243637.5 42 254249.0 43 281687.0 44 315782.5 45 324069.5 46 310893.0 47 293477.0 48 275945.0 49 264140.5 50 256731.0 51 247813.0 52 236285.0 53 223428.0 54 209603.5 55 193811.5 56 176716.5 57 159415.5 58 142078.5 59 122492.0 60 102320.5 61 83207.0 62 65182.5 63 50191.5 64 38162.5 65 28295.0 66 20881.0 67 15880.5 68 12002.0 69 8771.5 70 6437.5 71 4653.5 72 3286.5 73 2215.0 74 1494.5 75 1015.5 76 667.5 77 408.0 78 269.5 79 187.0 80 117.5 81 73.5 82 57.0 83 45.5 84 31.0 85 20.5 86 12.0 87 11.5 88 9.0 89 5.0 90 3.0 91 1.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.019282769207308044 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.9390831815407627E-4 26-27 2.757707793282224E-4 28-29 0.003357882131716001 30-31 0.0054924233755644924 32-33 0.0037810230768178118 34-35 0.0018485638998954252 36-37 0.0 38-39 0.0 40-41 4.440285825235194E-4 42-43 8.128267309450046E-6 44-45 1.638466205569507E-5 46-47 1.9839652620909045E-4 48-49 0.0015013763868026012 50-51 0.002506252384829503 52-53 0.0 54-55 0.002986571606083493 56-57 0.03795695140083074 58-59 0.05990136034672072 60-61 0.04182715783850468 62-63 0.013204233121794928 64-65 3.8330180453141177E-4 66-67 0.0 68-69 0.0 70-71 0.002667267405917951 72-73 0.004812038377565955 74-75 0.004114335768173694 76-77 0.002987302518826029 78-79 0.007085885014384931 80-81 0.015616181786516763 82-83 0.041335655256065494 84-85 0.018616678477625128 86-87 0.001843448106885147 88-89 0.0011664486396804339 90-91 7.238393597785631E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 57.0 20-21 258.0 22-23 554.0 24-25 646.0 26-27 1858.0 28-29 4828.0 30-31 14440.0 32-33 17542.0 34-35 23898.0 36-37 37360.0 38-39 42549.0 40-41 41455.0 42-43 45923.0 44-45 53634.0 46-47 55241.0 48-49 50602.0 50-51 44963.0 52-53 41432.0 54-55 43984.0 56-57 44938.0 58-59 48785.0 60-61 54306.0 62-63 54701.0 64-65 65493.0 66-67 73530.0 68-69 74943.0 70-71 106660.0 72-73 53314.0 74-75 48609.0 76-77 51035.0 78-79 52525.0 80-81 51963.0 82-83 48845.0 84-85 48202.0 86-87 49233.0 88-89 50872.0 90-91 52478.0 92-93 51881.0 94-95 60975.0 96-97 190692.0 98-99 1442197.0 100-101 3050235.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.57813693953157 #Duplication Level Percentage of deduplicated Percentage of total 1 90.26213524890073 77.24465370784948 2 6.8166962114170255 11.667203237116645 3 1.596801551011752 4.0995390539322045 4 0.6012661141850839 2.058209354273246 5 0.2800278272416784 1.1982129873283924 6 0.15006233246522532 0.7705232902304741 7 0.08212863872409623 0.4919891123971616 8 0.05113395960041078 0.3500759197555543 9 0.039481700420998335 0.3040893328710381 >10 0.11803406291923646 1.5558707738373307 >50 0.0014565835462406283 0.08085792200718545 >100 6.883700676470667E-4 0.10400538670802845 >500 5.826634215788376E-5 0.037571954173778684 >1k 2.9133157732331777E-5 0.03719796751952505 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.5753896411199382E-5 2 0.0 0.0 0.0 0.0 1.5753896411199382E-5 3 0.0 1.5753896411199382E-5 0.0 1.5753896411199382E-5 1.5753896411199382E-5 4 0.0 3.1507792822398764E-5 0.0 1.5753896411199382E-5 1.5753896411199382E-5 5 0.0 3.1507792822398764E-5 0.0 1.5753896411199382E-5 1.5753896411199382E-5 6 0.0 3.1507792822398764E-5 0.0 1.5753896411199382E-5 3.1507792822398764E-5 7 0.0 4.7261689233598146E-5 0.0 1.5753896411199382E-5 3.1507792822398764E-5 8 0.0 4.7261689233598146E-5 0.0 1.5753896411199382E-5 3.1507792822398764E-5 9 0.0 7.87694820559969E-5 0.0 1.5753896411199382E-5 3.1507792822398764E-5 10-11 0.0 7.87694820559969E-5 0.0 7.089253385039721E-5 3.1507792822398764E-5 12-13 0.0 7.87694820559969E-5 0.0 7.87694820559969E-5 3.1507792822398764E-5 14-15 0.0 9.452337846719629E-5 0.0 7.87694820559969E-5 3.1507792822398764E-5 16-17 0.0 1.1027727487839567E-4 0.0 8.66464302615966E-5 3.1507792822398764E-5 18-19 0.0 1.4966201590639413E-4 0.0 9.452337846719629E-5 3.1507792822398764E-5 20-21 0.0 1.732928605231932E-4 0.0 1.1027727487839567E-4 3.1507792822398764E-5 22-23 0.0 1.732928605231932E-4 0.0 1.1815422308399536E-4 4.7261689233598146E-5 24-25 0.0 1.8116980872879288E-4 0.0 1.4966201590639413E-4 7.87694820559969E-5 26-27 0.0 1.8904675693439259E-4 0.0 2.441853943735904E-4 7.87694820559969E-5 28-29 0.0 1.8904675693439259E-4 0.0 5.986480636255765E-4 7.87694820559969E-5 30-31 0.0 2.2055454975679134E-4 0.0 0.002260684135007111 7.87694820559969E-5 32-33 0.0 2.2055454975679134E-4 0.0 0.006073127066517362 9.452337846719629E-5 34-35 0.0 2.8357013540158884E-4 0.0 0.010838680730905175 9.452337846719629E-5 36-37 0.0 3.5446266925198613E-4 0.0 0.01808547308005689 9.452337846719629E-5 38-39 0.0 3.7809351386878517E-4 0.0 0.03723433416786974 9.452337846719629E-5 40-41 0.0 4.0960130669118395E-4 0.0 0.05767501476140094 9.452337846719629E-5 42-43 0.0 4.253552031023833E-4 0.0 0.06947468317338927 9.452337846719629E-5 44-45 0.0 5.1200163336398E-4 0.0 0.08318057305113274 1.0240032667279599E-4 46-47 0.0 5.907711154199769E-4 0.0 0.09812314379715534 1.1815422308399536E-4 48-49 0.0 6.065250118311761E-4 0.0 0.11175026419284281 1.2603117128959506E-4 50-51 0.0 7.168022867095719E-4 0.0 0.12607843297882865 1.2603117128959506E-4 52-53 0.0 7.246792349151716E-4 0.0 0.16487240289140714 1.5753896411199383E-4 54-55 0.0 7.561870277375703E-4 0.0 0.21226012329629487 1.8904675693439259E-4 56-57 0.0 8.034487169711684E-4 0.0 0.275519894335466 1.8904675693439259E-4 58-59 0.0 8.507104062047666E-4 0.0 0.3172440889805276 1.8904675693439259E-4 60-61 0.0 8.979720954383648E-4 0.0 0.3333288172163621 1.8904675693439259E-4 62-63 0.0 8.979720954383648E-4 0.0 0.3449158080267993 1.8904675693439259E-4 64-65 0.0 9.92495473905561E-4 0.0 0.35022487111737344 1.8904675693439259E-4 66-67 0.0 0.0010082493703167605 0.0 0.3553685182956301 1.8904675693439259E-4 68-69 0.0 0.0010555110595503586 0.0 0.36063819664517627 1.8904675693439259E-4 70-71 0.0 0.0010870188523727574 0.0 0.3653092269310969 1.8904675693439259E-4 72-73 0.0 0.0011027727487839568 0.0 0.3690665312251679 2.2055454975679134E-4 74-75 0.0 0.0011185266451951563 0.0 0.3720440176468846 2.2055454975679134E-4 76-77 0.0 0.0011421574898119553 0.0 0.3749269806901341 2.2055454975679134E-4 78-79 0.0 0.0011500344380175548 0.0 0.3765732628651044 2.2055454975679134E-4 80-81 0.0 0.0011500344380175548 0.0 0.3772034187215524 2.2843149796239102E-4 82-83 0.0 0.0011579113862231546 0.0 0.377802066785178 2.520623425791901E-4 84-85 0.0 0.0011815422308399538 0.0 0.3780068674385235 2.520623425791901E-4 86-87 0.0 0.001197296127251153 0.0 0.37812502166160755 2.599392907847898E-4 88 0.0 0.0012130500236623525 0.0 0.37812502166160755 2.678162389903895E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 12450 0.0 52.24093 1 GGTATCA 8155 0.0 50.682323 1 TATACAC 15460 0.0 43.91759 3 TTATACA 15735 0.0 42.16718 2 GTATCAA 15310 0.0 37.458145 1 TACACAT 20570 0.0 32.904884 5 ACACATC 20860 0.0 31.657513 6 ATCAACG 17925 0.0 31.514061 3 TCAACGC 18180 0.0 31.188232 4 ACATCTC 21435 0.0 30.80829 8 CAACGCA 18495 0.0 30.634203 5 ATACACA 23215 0.0 30.156849 4 TATCAAC 18895 0.0 30.082712 2 AACGCAG 19075 0.0 29.769178 6 CACATCT 22890 0.0 28.665386 7 CATCTCC 24395 0.0 26.862295 9 ACGCAGA 21590 0.0 26.262253 7 CGCAGAG 22020 0.0 25.730227 8 TGGTATC 3775 0.0 22.94978 2 GTGGTAT 4075 0.0 22.815851 1 >>END_MODULE