##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140147_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6572555 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.11694112867827 31.0 25.0 32.0 18.0 33.0 2 29.592867766036193 31.0 29.0 33.0 18.0 33.0 3 29.954296160321213 31.0 29.0 33.0 25.0 33.0 4 30.91028983401432 33.0 31.0 33.0 28.0 33.0 5 31.900046176867292 33.0 32.0 33.0 30.0 33.0 6 34.87619898197885 37.0 34.0 38.0 29.0 38.0 7 36.285921380650294 38.0 37.0 38.0 33.0 38.0 8 36.105315817060486 38.0 36.0 38.0 33.0 38.0 9 36.62848222647053 38.0 37.0 38.0 34.0 38.0 10-11 36.926953140749674 38.0 38.0 38.0 35.0 38.0 12-13 37.099604872077904 38.0 38.0 38.0 36.0 38.0 14-15 37.12339447901159 38.0 38.0 38.0 36.0 38.0 16-17 37.18329888452816 38.0 38.0 38.0 36.0 38.0 18-19 37.23701262294496 38.0 38.0 38.0 36.0 38.0 20-21 37.27949475231329 38.0 38.0 38.0 37.0 38.0 22-23 37.22920220618696 38.0 38.0 38.0 36.5 38.0 24-25 37.30209192922699 38.0 38.0 38.0 37.0 38.0 26-27 37.27990837145411 38.0 38.0 38.0 37.0 38.0 28-29 37.24733853653904 38.0 38.0 38.0 37.0 38.0 30-31 37.24620039038336 38.0 38.0 38.0 37.0 38.0 32-33 37.23328126749155 38.0 38.0 38.0 37.0 38.0 34-35 37.14255986531984 38.0 38.0 38.0 36.0 38.0 36-37 37.16096705491775 38.0 38.0 38.0 36.0 38.0 38-39 37.095545152365176 38.0 38.0 38.0 36.0 38.0 40-41 37.17900174031848 38.0 38.0 38.0 36.0 38.0 42-43 37.163919999582234 38.0 38.0 38.0 36.0 38.0 44-45 37.1220893051876 38.0 38.0 38.0 36.0 38.0 46-47 37.08543718825224 38.0 38.0 38.0 36.0 38.0 48-49 37.03033423640035 38.0 38.0 38.0 36.0 38.0 50-51 36.99512083581986 38.0 38.0 38.0 36.0 38.0 52-53 36.90276209624522 38.0 38.0 38.0 36.0 38.0 54-55 36.92989380707765 38.0 38.0 38.0 36.0 38.0 56-57 36.88878077532215 38.0 38.0 38.0 36.0 38.0 58-59 36.86109685771458 38.0 38.0 38.0 35.5 38.0 60-61 36.845272192307746 38.0 38.0 38.0 35.0 38.0 62-63 36.853258174523404 38.0 38.0 38.0 35.0 38.0 64-65 36.861052125088754 38.0 38.0 38.0 35.0 38.0 66-67 36.85278977163352 38.0 38.0 38.0 35.0 38.0 68-69 36.83513113092944 38.0 38.0 38.0 35.0 38.0 70-71 36.834310207172166 38.0 38.0 38.0 35.0 38.0 72-73 36.85002204320648 38.0 38.0 38.0 35.0 38.0 74-75 36.792851220005375 38.0 38.0 38.0 35.0 38.0 76-77 36.7948082569431 38.0 38.0 38.0 35.0 38.0 78-79 36.79597425988447 38.0 38.0 38.0 35.0 38.0 80-81 36.775735993435944 38.0 38.0 38.0 35.0 38.0 82-83 36.720692610755165 38.0 38.0 38.0 35.0 38.0 84-85 36.715420068099725 38.0 38.0 38.0 35.0 38.0 86-87 36.70932036245921 38.0 38.0 38.0 34.5 38.0 88-89 36.68293421095656 38.0 38.0 38.0 34.0 38.0 90-91 36.6935875568589 38.0 38.0 38.0 34.0 38.0 92-93 36.66640395544211 38.0 38.0 38.0 34.0 38.0 94-95 36.59221531208553 38.0 38.0 38.0 34.0 38.0 96-97 36.61230284410692 38.0 38.0 38.0 34.0 38.0 98-99 36.63908029663388 38.0 38.0 38.0 34.0 38.0 100 35.045328901602254 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 11.0 19 13.0 20 34.0 21 119.0 22 514.0 23 1694.0 24 3993.0 25 8232.0 26 14570.0 27 23535.0 28 35855.0 29 50683.0 30 68562.0 31 89844.0 32 117773.0 33 161992.0 34 247256.0 35 454910.0 36 1296169.0 37 3996795.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.38186063106357 18.37912349154933 14.433154229976013 26.80586164741109 2 13.593615629964392 19.99428412552827 43.718785063184306 22.69331518132303 3 17.718421527092584 25.337056897964338 31.232055114031 25.712466460912083 4 11.919702459697941 18.324411130831162 38.78147843570727 30.97440797376363 5 13.174480852575595 36.657707695104875 36.213892466476125 13.953918985843405 6 29.271295561619493 38.03397613256945 18.648349081901937 14.046379223909119 7 25.73388887578727 32.810954035378934 22.520481000158995 18.934676088674802 8 23.93734247944673 36.93551442323419 21.33193255895158 17.7952105383675 9 24.69805121448204 17.091268159794783 20.82745598933748 37.3832246363857 10-11 23.69603601643501 26.655790632410074 29.022389314353397 20.625784036801516 12-13 24.777190909775573 23.90149645001069 28.93282749250482 22.38848514770892 14-15 21.980865888531934 25.494560334603516 26.17696618742635 26.347607589438205 16-17 21.87920831396618 29.182433619802346 26.75099713886 22.187360927371472 18-19 21.903719329849654 27.52838888377503 28.64894245845033 21.918949327924985 20-21 22.35534246106387 26.776638132206916 28.586728338122885 22.281291068606325 22-23 22.22901606847345 27.27112269944998 28.420165231209882 22.07969600086669 24-25 22.3718072405026 27.163845329317667 28.716658743670482 21.74768868650926 26-27 22.36011577874201 27.4131693677293 28.625447794936665 21.601267058592025 28-29 21.673481048952787 26.912687829428737 28.753511197731886 22.660319923886586 30-31 22.591745129411134 26.994331599234663 28.826902139493964 21.58702113186024 32-33 22.726504032052937 26.686985681617603 29.13628196857249 21.450228317756967 34-35 21.554512346653144 26.940401754592934 29.671412177659427 21.833673721094492 36-37 22.206520968123872 27.158516828490963 28.87192387531433 21.763038328070834 38-39 21.640673281869827 26.774473857273605 29.311433580247524 22.27341928060904 40-41 21.77788336599157 26.661011861999494 29.404132360453435 22.1569724115555 42-43 22.13870652787035 26.58249066998296 29.462788533968542 21.81601426817815 44-45 21.63214001968434 27.19128197222848 29.26952129110292 21.907056716984265 46-47 22.358261570901934 26.57123015032683 28.40404452257774 22.666463756193494 48-49 22.124942830208052 26.643512833874 28.64481764083563 22.58672669508232 50-51 21.6492414214042 27.076991294164564 28.933108052528674 22.340659231902567 52-53 21.800298391818096 27.300490299161407 29.221941128480537 21.67727018053996 54-55 21.70633555318504 27.35964345472834 28.59851355004654 22.335507442040083 56-57 22.224623887236604 27.838890341219113 27.837762747058157 22.098723024486123 58-59 21.36256437587475 28.328130193074845 28.750531224307124 21.55877420674328 60-61 22.112443408917585 28.934682358076596 27.677384862910625 21.27548937009519 62-63 21.29344250695091 29.433571320629447 27.685172105087947 21.5878140673317 64-65 21.324956938015795 29.24633720030352 27.72377560339115 21.70493025828954 66-67 21.434799089890742 29.086414363653695 27.835135683760125 21.643650862695434 68-69 21.558555193582205 28.842988211653726 27.94065307283456 21.657803521929505 70-71 21.698460647097768 28.128917061455645 27.9753885935081 22.197233697938483 72-73 21.954895526136774 27.642178904005377 28.116600795183032 22.286324774674817 74-75 21.87037270967333 27.762664045913453 28.236294918400983 22.13066832601223 76-77 22.00812921421546 27.459742762510814 28.12488890468911 22.407239118584616 78-79 22.04138633926838 27.50597248195123 27.86788726915197 22.584753909628418 80-81 22.21486134245642 27.696340767884838 27.874512451861218 22.21428543779753 82-83 22.263569963401196 27.510625975301405 27.919557583301934 22.306246477995465 84-85 22.19402261312892 27.468270146930195 27.862538598034508 22.475168641906375 86-87 22.003014916562414 27.69128311107688 27.956061976241774 22.349639996118935 88-89 22.331366024818983 27.721003449941524 27.851439192022227 22.09619133321727 90-91 22.406565410355984 27.683898629544107 27.86507442029692 22.044461539802988 92-93 22.209437181992012 27.452620895977887 27.867755335315103 22.470186586714995 94-95 22.28250142766539 27.841722162245542 27.81572964379926 22.06004676628981 96-97 22.522845631601097 27.659183410398597 27.993605751903917 21.82436520609639 98-99 23.26556232127268 29.74717959329357 28.27344300893383 18.713815076499927 100 22.146966856942075 30.621141302987496 22.278091125345167 24.953800714725258 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1407.0 1 1256.0 2 1506.5 3 2057.5 4 2685.5 5 3868.0 6 4895.5 7 6146.5 8 7818.5 9 8649.0 10 8400.5 11 8262.5 12 9154.0 13 11338.5 14 15705.0 15 20854.5 16 24747.0 17 27108.0 18 27214.5 19 25403.5 20 23029.0 21 21197.0 22 21432.0 23 24315.0 24 30089.5 25 38891.5 26 50827.0 27 64149.5 28 76620.0 29 90668.5 30 105139.5 31 118647.0 32 134162.0 33 149882.5 34 165093.0 35 179945.5 36 195770.5 37 209877.5 38 218292.0 39 225930.5 40 237596.5 41 248321.5 42 256180.0 43 262894.5 44 267389.0 45 276195.5 46 314262.5 47 344135.5 48 336618.0 49 319780.5 50 297521.5 51 270728.0 52 246445.0 53 228883.5 54 212754.5 55 197108.5 56 180364.0 57 161927.5 58 143585.5 59 125416.5 60 105058.5 61 85328.0 62 67319.0 63 51850.0 64 39609.0 65 29613.0 66 21988.0 67 16621.5 68 12625.5 69 9305.0 70 6811.0 71 4867.0 72 3460.5 73 2393.0 74 1622.0 75 1114.5 76 716.5 77 457.0 78 292.5 79 182.5 80 108.0 81 72.0 82 55.0 83 38.5 84 22.5 85 13.5 86 10.0 87 7.0 88 3.5 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.021026830509596344 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 4.412916942664188E-4 26-27 3.956879148540482E-4 28-29 0.0037832987380985944 30-31 0.006279368813697681 32-33 0.004789012675913153 34-35 0.002298139120149777 36-37 0.0 38-39 7.740579733815397E-6 40-41 4.2854986750406865E-4 42-43 7.844140074378137E-6 44-45 7.905356440268588E-6 46-47 4.0677641653905056E-4 48-49 0.0017540881115471296 50-51 0.0030663121642063706 52-53 0.0 54-55 0.0029945957419152086 56-57 0.03967390980040882 58-59 0.06254373370579377 60-61 0.043396836081561516 62-63 0.014209431563283779 64-65 4.118283979703724E-4 66-67 0.0 68-69 2.640284707180545E-5 70-71 0.003191888276400001 72-73 0.005279253904217252 74-75 0.004375681120174367 76-77 0.0034160641109137694 78-79 0.008383531715545367 80-81 0.015905655768004352 82-83 0.04242962459076527 84-85 0.01952195551303295 86-87 0.0019327259847141769 88-89 0.001412322850334284 90-91 5.945059328719571E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 50.0 20-21 272.0 22-23 500.0 24-25 620.0 26-27 1826.0 28-29 4695.0 30-31 14260.0 32-33 17971.0 34-35 24442.0 36-37 37939.0 38-39 42518.0 40-41 42246.0 42-43 46916.0 44-45 55304.0 46-47 55790.0 48-49 51570.0 50-51 45109.0 52-53 41909.0 54-55 44521.0 56-57 46747.0 58-59 30730.0 60-61 64008.0 62-63 59956.0 64-65 67081.0 66-67 75341.0 68-69 77145.0 70-71 105924.0 72-73 54462.0 74-75 49305.0 76-77 50481.0 78-79 52708.0 80-81 52674.0 82-83 48797.0 84-85 48310.0 86-87 49714.0 88-89 51361.0 90-91 52759.0 92-93 52641.0 94-95 61803.0 96-97 219350.0 98-99 437886.0 100-101 4234914.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.27775731624716 #Duplication Level Percentage of deduplicated Percentage of total 1 90.36648411143227 77.9661758568866 2 6.846938442507305 11.81476986603857 3 1.6107239391444155 4.169089473749146 4 0.5698323219875818 1.9665541914959277 5 0.2502997901181983 1.0797652274062755 6 0.12395183038761512 0.6416571564652372 7 0.06771295449749445 0.4089485298710639 8 0.04731719845017265 0.3265937411814961 9 0.02896475674393363 0.2249112827769515 >10 0.08537156315239136 1.1061046187614847 >50 0.0015810353696743995 0.09388764292671298 >100 7.15892888565355E-4 0.11253470633055944 >500 5.3081738327287453E-5 0.025028460881640076 >1k 5.308158210551614E-5 0.0639792452282638 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.128869975222726E-5 0.0 0.0 0.0 3 0.0 1.0650348304426513E-4 0.0 0.0 0.0 4 0.0 1.5214783292037876E-4 0.0 3.042956658407575E-5 1.5214783292037875E-5 5 0.0 1.6736261621241662E-4 0.0 3.042956658407575E-5 1.5214783292037875E-5 6 9.128869975222726E-5 1.6736261621241662E-4 0.0 3.042956658407575E-5 1.5214783292037875E-5 7 9.128869975222726E-5 1.6736261621241662E-4 0.0 3.042956658407575E-5 1.5214783292037875E-5 8 9.128869975222726E-5 1.825773995044545E-4 0.0 3.042956658407575E-5 1.5214783292037875E-5 9 9.128869975222726E-5 2.7386609925668175E-4 0.0 6.08591331681515E-5 1.5214783292037875E-5 10-11 1.1411087469028407E-4 2.7386609925668175E-4 0.0 9.128869975222726E-5 1.5214783292037875E-5 12-13 1.21718266336303E-4 2.7386609925668175E-4 0.0 9.128869975222726E-5 1.5214783292037875E-5 14-15 1.21718266336303E-4 3.1190305748677645E-4 0.0 9.889609139824619E-5 1.5214783292037875E-5 16-17 1.9779218279649237E-4 3.2711784077881433E-4 0.0 1.0650348304426513E-4 3.042956658407575E-5 18-19 1.9779218279649237E-4 3.4994001571687114E-4 0.0 1.0650348304426513E-4 3.042956658407575E-5 20-21 1.9779218279649237E-4 3.65154799008909E-4 0.0 1.2932565798232193E-4 3.803695823009469E-5 22-23 1.9779218279649237E-4 3.8797697394696583E-4 0.0 1.4454044127435982E-4 4.564434987611363E-5 24-25 2.0539957444251132E-4 4.1079914888502263E-4 0.0 1.7497000785843557E-4 6.08591331681515E-5 26-27 2.2822174938056815E-4 4.260139321770605E-4 0.0 2.9668827419473856E-4 6.08591331681515E-5 28-29 2.43436532672606E-4 4.260139321770605E-4 0.0 7.37916989663837E-4 6.08591331681515E-5 30-31 2.5104392431862495E-4 5.781617650974393E-4 0.0 0.001985529219610943 6.08591331681515E-5 32-33 2.5865131596464387E-4 5.781617650974393E-4 0.0 0.004739404995469798 6.08591331681515E-5 34-35 2.5865131596464387E-4 6.618430732036476E-4 0.0 0.007896472528567658 6.08591331681515E-5 36-37 2.5865131596464387E-4 7.531317729558749E-4 0.0 0.013951956278798732 6.08591331681515E-5 38-39 2.5865131596464387E-4 7.759539478939317E-4 0.0 0.032186874054306126 6.08591331681515E-5 40-41 2.5865131596464387E-4 8.52027864354121E-4 0.0 0.05195087755066333 6.08591331681515E-5 42-43 2.5865131596464387E-4 8.5963525600014E-4 0.0 0.0621447823563287 6.08591331681515E-5 44-45 2.662587076106628E-4 9.661387390444052E-4 0.0 0.07405035028234834 6.08591331681515E-5 46-47 2.7386609925668175E-4 0.0010650348304426514 0.0 0.08739371522946557 6.08591331681515E-5 48-49 2.7386609925668175E-4 0.001080249613734689 0.0 0.09851572181594526 6.08591331681515E-5 50-51 2.7386609925668175E-4 0.0013008639714692384 0.0 0.10993441667661967 6.08591331681515E-5 52-53 2.7386609925668175E-4 0.0013236861464072953 0.0 0.14740842792490894 6.846652481417044E-5 54-55 2.7386609925668175E-4 0.001331293538053314 0.0 0.1955556096525628 7.607391646018938E-5 56-57 2.7386609925668175E-4 0.001338900929699333 0.0 0.25207852958248356 7.607391646018938E-5 58-59 2.7386609925668175E-4 0.001338900929699333 0.0 0.44960445367136526 9.128869975222726E-5 60-61 3.2711784077881433E-4 0.0013997600628674845 0.0 0.6229008353676766 9.128869975222726E-5 62-63 4.1079914888502263E-4 0.0014454044127435982 0.0 0.6291541113007042 9.128869975222726E-5 64-65 4.1079914888502263E-4 0.001582337462371939 0.0 0.6351183063511832 9.128869975222726E-5 66-67 4.1840654053104155E-4 0.001582337462371939 0.0 0.6408694944355734 9.128869975222726E-5 68-69 4.260139321770605E-4 0.0016279818122480528 0.0 0.6466815416531319 9.128869975222726E-5 70-71 4.260139321770605E-4 0.0016431965955400905 0.0 0.6514970205650619 9.128869975222726E-5 72-73 4.564434987611363E-4 0.0016431965955400905 0.0 0.6549812059389385 1.5214783292037876E-4 74-75 4.564434987611363E-4 0.0016508039871861095 0.0 0.6579100517226558 1.5214783292037876E-4 76-77 4.564434987611363E-4 0.001696448337062223 0.0 0.6610823340390457 1.5214783292037876E-4 78-79 4.564434987611363E-4 0.0017344852952923177 0.0 0.6631439371751169 1.5214783292037876E-4 80-81 4.564434987611363E-4 0.0017344852952923177 0.0 0.6639046763397187 1.5214783292037876E-4 82-83 4.564434987611363E-4 0.0017344852952923177 0.0 0.6644524085382321 1.6736261621241662E-4 84-85 4.564434987611363E-4 0.0017573074702303747 0.0 0.664794741162303 1.6736261621241662E-4 86-87 4.640508904071552E-4 0.0017953444284604693 0.0 0.6649164594286392 1.6736261621241662E-4 88 4.86873065345212E-4 0.0019018479115047345 0.0 0.6649316742119313 1.6736261621241662E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7870 0.0 51.056408 1 CTTATAC 14355 0.0 43.2726 1 GTATCAA 14895 0.0 38.48486 1 TATACAC 17360 0.0 37.192387 3 TTATACA 17910 0.0 35.25189 2 TCAACGC 17965 0.0 31.42968 4 ATCAACG 17950 0.0 31.243244 3 CAACGCA 18440 0.0 30.620077 5 TATCAAC 18650 0.0 30.190277 2 AACGCAG 18900 0.0 29.852383 6 TACACAT 22445 0.0 29.030916 5 ACACATC 22340 0.0 28.065992 6 ACATCTC 23600 0.0 26.477678 8 ATACACA 25600 0.0 26.215347 4 ACGCAGA 21890 0.0 25.83292 7 CACATCT 24515 0.0 25.420202 7 CGCAGAG 22215 0.0 25.4168 8 CATCTCC 26875 0.0 23.23531 9 GTGGTAT 4050 0.0 22.10561 1 TGGTATC 3710 0.0 21.844118 2 >>END_MODULE