##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140145_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5427639 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.57803567997061 18.0 18.0 32.0 18.0 33.0 2 26.66133027638721 27.0 25.0 30.0 18.0 33.0 3 25.84112834328149 27.0 18.0 30.0 18.0 31.0 4 30.335357417838583 31.0 29.0 33.0 27.0 33.0 5 32.10286645814138 33.0 32.0 33.0 31.0 33.0 6 36.52012302218331 38.0 37.0 38.0 34.0 38.0 7 36.87158246891512 38.0 38.0 38.0 35.0 38.0 8 37.09940620590279 38.0 38.0 38.0 36.0 38.0 9 37.27754940960517 38.0 38.0 38.0 36.0 38.0 10-11 37.2603062768176 38.0 38.0 38.0 36.0 38.0 12-13 37.362415868115036 38.0 38.0 38.0 37.0 38.0 14-15 37.350395908792024 38.0 38.0 38.0 37.0 38.0 16-17 37.380853074421495 38.0 38.0 38.0 37.0 38.0 18-19 37.38842303255615 38.0 38.0 38.0 37.0 38.0 20-21 37.40326683273811 38.0 38.0 38.0 37.0 38.0 22-23 37.34355206540161 38.0 38.0 38.0 37.0 38.0 24-25 37.4014992665491 38.0 38.0 38.0 37.0 38.0 26-27 37.366575909994836 38.0 38.0 38.0 37.0 38.0 28-29 37.342898151851315 38.0 38.0 38.0 37.0 38.0 30-31 37.35136887466275 38.0 38.0 38.0 37.0 38.0 32-33 37.32100014017935 38.0 38.0 38.0 37.0 38.0 34-35 37.226099560914214 38.0 38.0 38.0 37.0 38.0 36-37 37.24441220353068 38.0 38.0 38.0 37.0 38.0 38-39 37.21074507842212 38.0 38.0 38.0 37.0 38.0 40-41 37.26596318752144 38.0 38.0 38.0 37.0 38.0 42-43 37.24189375303217 38.0 38.0 38.0 37.0 38.0 44-45 37.20296914200746 38.0 38.0 38.0 37.0 38.0 46-47 37.1599840088418 38.0 38.0 38.0 37.0 38.0 48-49 37.10053767674496 38.0 38.0 38.0 36.0 38.0 50-51 37.06378976563427 38.0 38.0 38.0 36.0 38.0 52-53 36.97154124825502 38.0 38.0 38.0 36.0 38.0 54-55 37.00695144678262 38.0 38.0 38.0 36.0 38.0 56-57 36.96795816303761 38.0 38.0 38.0 36.0 38.0 58-59 36.94291214535843 38.0 38.0 38.0 36.0 38.0 60-61 36.93554955689967 38.0 38.0 38.0 36.0 38.0 62-63 36.950117093914706 38.0 38.0 38.0 36.0 38.0 64-65 36.957323874888885 38.0 38.0 38.0 36.0 38.0 66-67 36.949453175798176 38.0 38.0 38.0 36.0 38.0 68-69 36.92859677314465 38.0 38.0 38.0 36.0 38.0 70-71 36.931133214398514 38.0 38.0 38.0 36.0 38.0 72-73 36.94466424092501 38.0 38.0 38.0 36.0 38.0 74-75 36.892984013285535 38.0 38.0 38.0 35.5 38.0 76-77 36.901108436940106 38.0 38.0 38.0 35.5 38.0 78-79 36.90846836067935 38.0 38.0 38.0 35.5 38.0 80-81 36.89225516506289 38.0 38.0 38.0 35.0 38.0 82-83 36.845424047825176 38.0 38.0 38.0 35.0 38.0 84-85 36.845933442536335 38.0 38.0 38.0 35.0 38.0 86-87 36.84224981826862 38.0 38.0 38.0 35.0 38.0 88-89 36.82438097765825 38.0 38.0 38.0 35.0 38.0 90-91 36.836824896583465 38.0 38.0 38.0 35.0 38.0 92-93 36.809077866363424 38.0 38.0 38.0 35.0 38.0 94-95 36.746725990963355 38.0 38.0 38.0 35.0 38.0 96-97 36.77150660120728 38.0 38.0 38.0 35.0 38.0 98-99 36.80036622869636 38.0 38.0 38.0 35.0 38.0 100 35.283487467016 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 6.0 19 27.0 20 92.0 21 223.0 22 582.0 23 1279.0 24 2959.0 25 5883.0 26 10164.0 27 17020.0 28 26362.0 29 38060.0 30 50362.0 31 65106.0 32 84325.0 33 114361.0 34 177141.0 35 358384.0 36 1249894.0 37 3225409.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 53.09347213401628 14.337707426746693 10.313213535388039 22.255606903848985 2 14.485304685916454 19.076802594483038 42.422266855847724 24.01562586375279 3 18.972356120220965 25.605534929644364 30.521724086660885 24.900384863473786 4 12.513931011255538 18.196106999747037 38.466375527185946 30.82358646181148 5 13.411927359207198 37.65132500521866 34.98355362248668 13.953194013087458 6 29.44423901442229 37.510435016035515 18.70780278496783 14.33752318457436 7 26.226025717627866 33.068374665301064 22.18649766500683 18.51910195206424 8 24.15534636699309 36.58898463954585 21.205758157460362 18.0499108360007 9 25.39767291081813 17.207223988183443 20.71720318908461 36.67789991191382 10-11 24.234588925313567 26.609765314163305 28.45495067007957 20.70069509044356 12-13 25.375913910265584 24.00751044791299 28.501296788529967 22.11527885329146 14-15 22.535056218735257 25.370119493945708 25.905904943199058 26.188919344119977 16-17 22.0499834274166 29.02787012916666 26.494383653739682 22.427762789677057 18-19 22.194530623720553 27.43703109215628 28.51907615816011 21.849362125963058 20-21 22.857610047944963 26.52642914817891 28.52477924083074 22.091181563045392 22-23 22.535571207548134 27.064703548857054 28.40051126211986 21.999213981474945 24-25 22.69546770032125 27.103544932538632 28.65818198703583 21.542805380104287 26-27 22.69905201042346 27.247181279048764 28.670888758657036 21.382877951870732 28-29 22.581340738902433 26.96531276077841 28.630579390397564 21.822767109921593 30-31 22.38805942595524 27.31092475758401 28.94368933831165 21.3573264781491 32-33 22.453580337382217 27.388405909740264 28.69186670515696 21.46614704772056 34-35 22.811861869707197 26.871097901269138 28.892483998570412 21.424556230453256 36-37 22.041701852291872 27.421837574733427 28.68608711207295 21.85037346090175 38-39 21.924890511838978 26.693330907037538 29.17074149913188 22.2110370819916 40-41 22.187510831896244 26.557944257916766 29.234904267996153 22.019640642190836 42-43 22.508625446488946 26.521723913813823 29.009860180176204 21.95979045952103 44-45 22.05330069748765 26.978487419065583 28.90149722439343 22.06671465905334 46-47 22.673921400639323 26.530216809669504 28.167235697038656 22.62862609265252 48-49 22.37524633455549 26.702128553278893 28.234350490480992 22.68827462168463 50-51 22.041530645540107 26.949975488612054 28.55199369797241 22.456500167875422 52-53 22.177835770282197 27.023595137865737 28.846448899696103 21.952120192155967 54-55 22.20941326442887 27.01619126906249 28.279629678501824 22.494765788006816 56-57 22.590486585859736 27.549595574042613 27.604987555698063 22.254930284399585 58-59 21.863949989721927 28.126046288222827 28.31984109476182 21.690162627293425 60-61 22.35994367114624 28.809824939260782 27.262861869381293 21.56736952021168 62-63 21.784596043897132 29.33441549711485 27.24562428977831 21.635364169209712 64-65 21.80297665052098 29.219279044512746 27.289670320306193 21.68807398466008 66-67 21.989882526714453 29.04052117305172 27.196146711292524 21.7734495889413 68-69 22.03613755752457 28.64552469205308 27.409426082980364 21.90891166744199 70-71 22.179466331696712 28.071810145838487 27.618128153889838 22.13059536857496 72-73 22.43906342220516 27.60265421331518 27.70261274469061 22.255669619789046 74-75 22.244096050182723 27.624625591529337 27.758994101442582 22.372284256845358 76-77 22.4882784069553 27.403981303207413 27.66055683376433 22.44718345607296 78-79 22.447551889818236 27.528350406812528 27.631360967645275 22.39273673572396 80-81 22.44618479790697 27.54842144952063 27.586310114869082 22.41908363770331 82-83 22.497337249365508 27.463787463927076 27.69123377699907 22.347641509708353 84-85 22.579723390918822 27.44620305829922 27.63324932341657 22.34082422736539 86-87 22.47748180941439 27.430588453482724 27.752985833986223 22.33894390311667 88-89 22.56337740637185 27.44632679286279 27.640650387413196 22.349645413352164 90-91 22.60324020287052 27.40682291503943 27.692937580332384 22.296999301757666 92-93 22.638651001867515 27.474335132297828 27.594935283305084 22.292078582529577 94-95 22.513888151348077 27.555337532302744 27.60126105243587 22.329513263913313 96-97 22.636586081453956 27.588579408169846 27.690821605977185 22.084012904399017 98-99 23.642635491832888 29.565148141977332 27.8773251953478 18.914891170841976 100 22.62084838528238 30.28247606801177 21.86748689909204 25.229188647613814 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 682.0 1 775.5 2 1260.0 3 1770.5 4 2283.5 5 3384.5 6 4347.0 7 5141.5 8 6687.5 9 7780.5 10 7419.0 11 7031.0 12 7757.5 13 9701.0 14 13126.5 15 17208.0 16 21540.0 17 25889.5 18 27345.5 19 25239.0 20 21998.5 21 18897.5 22 17343.0 23 18531.0 24 22223.0 25 28250.0 26 36736.5 27 46534.0 28 56405.5 29 67521.5 30 79096.5 31 90171.0 32 102028.0 33 113845.5 34 126212.0 35 137680.0 36 149712.5 37 162018.0 38 172264.5 39 181214.0 40 190446.0 41 199515.5 42 210107.0 43 231724.5 44 258357.0 45 269761.5 46 262833.5 47 252828.0 48 242287.0 49 231042.0 50 224416.5 51 219473.5 52 211895.0 53 201917.0 54 190566.5 55 176770.0 56 161859.0 57 146121.0 58 130376.0 59 114408.5 60 96155.0 61 77843.0 62 61935.0 63 48215.5 64 36866.5 65 27763.5 66 20405.0 67 15626.0 68 12083.0 69 8856.0 70 6495.0 71 4772.0 72 3422.0 73 2352.5 74 1588.5 75 1108.5 76 762.0 77 488.0 78 305.5 79 196.0 80 124.0 81 76.5 82 50.0 83 35.5 84 25.5 85 16.5 86 10.0 87 6.5 88 6.0 89 5.5 90 4.5 91 2.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.013615496535418069 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.316764253241584E-4 26-27 3.317215352514947E-4 28-29 0.003917860623168458 30-31 0.006100987870848455 32-33 0.004477996936457963 34-35 0.001976735035094935 36-37 0.0 38-39 0.0 40-41 4.627884116270583E-4 42-43 0.0 44-45 0.0 46-47 3.9681629447717857E-4 48-49 0.0015824552985682881 50-51 0.0025614138373880515 52-53 0.0 54-55 0.003108841334834507 56-57 0.04072377315478398 58-59 0.06552739244033433 60-61 0.04395620155316693 62-63 0.014021486376823104 64-65 3.4461282435898884E-4 66-67 0.0 68-69 1.072369154073389E-5 70-71 0.0034198702083016804 72-73 0.0054336771563564396 74-75 0.004514882068263005 76-77 0.0035757984097961985 78-79 0.008453420513694541 80-81 0.016725318471704168 82-83 0.045073378553235253 84-85 0.02097165456608461 86-87 0.002086977886453462 88-89 0.0014975391837117576 90-91 1.2109633843423403E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 34.0 20-21 161.0 22-23 380.0 24-25 559.0 26-27 1714.0 28-29 4617.0 30-31 12409.0 32-33 15424.0 34-35 21149.0 36-37 31761.0 38-39 36614.0 40-41 35884.0 42-43 40656.0 44-45 47785.0 46-47 48371.0 48-49 44744.0 50-51 38351.0 52-53 35783.0 54-55 38034.0 56-57 39107.0 58-59 41550.0 60-61 45682.0 62-63 46619.0 64-65 56987.0 66-67 64636.0 68-69 64351.0 70-71 83701.0 72-73 46079.0 74-75 41363.0 76-77 43223.0 78-79 44875.0 80-81 44563.0 82-83 42248.0 84-85 41092.0 86-87 42742.0 88-89 44179.0 90-91 44745.0 92-93 44208.0 94-95 52120.0 96-97 162763.0 98-99 357037.0 100-101 3479339.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.26786893341571 #Duplication Level Percentage of deduplicated Percentage of total 1 91.52722328041362 80.78912948355025 2 6.219663333727047 10.979928559027808 3 1.3612644202471789 3.6046772829030043 4 0.43565063826136663 1.5381581375525286 5 0.1951908430042308 0.8614539873650184 6 0.0935179573768637 0.49527784827970583 7 0.050431622024470824 0.3116044262068886 8 0.0323727593048522 0.2285979580266967 9 0.017906837511454034 0.14225385478256972 >10 0.06497097222158336 0.8501448519575558 >50 0.0011049865108616668 0.06769581548965345 >100 6.72489513270435E-4 0.11684518627552647 >500 2.985988319327133E-5 0.014232608582782195 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 1.842421723331268E-5 1.842421723331268E-5 4 0.0 3.684843446662536E-5 0.0 1.842421723331268E-5 3.684843446662536E-5 5 0.0 3.684843446662536E-5 0.0 1.842421723331268E-5 3.684843446662536E-5 6 0.0 3.684843446662536E-5 0.0 1.842421723331268E-5 5.527265169993804E-5 7 0.0 3.684843446662536E-5 0.0 1.842421723331268E-5 5.527265169993804E-5 8 0.0 5.527265169993804E-5 0.0 1.842421723331268E-5 7.369686893325072E-5 9 0.0 7.369686893325072E-5 0.0 3.684843446662536E-5 7.369686893325072E-5 10-11 0.0 7.369686893325072E-5 0.0 3.684843446662536E-5 7.369686893325072E-5 12-13 0.0 7.369686893325072E-5 0.0 7.369686893325072E-5 7.369686893325072E-5 14-15 0.0 1.842421723331268E-4 0.0 9.21210861665634E-5 1.1054530339987608E-4 16-17 1.842421723331268E-5 1.842421723331268E-4 0.0 1.0133319478321975E-4 1.4739373786650144E-4 18-19 1.842421723331268E-5 2.303027154164085E-4 0.0 1.2896952063318876E-4 1.658179550998141E-4 20-21 1.842421723331268E-5 2.763632584996902E-4 0.0 1.4739373786650144E-4 1.9345428094978313E-4 22-23 2.763632584996902E-5 2.9478747573300287E-4 0.0 1.7503006371647045E-4 2.303027154164085E-4 24-25 3.684843446662536E-5 3.500601274329409E-4 0.0 2.026663895664395E-4 2.6715114988303386E-4 26-27 3.684843446662536E-5 3.684843446662536E-4 0.0 3.869085618995663E-4 2.8557536711634653E-4 28-29 3.684843446662536E-5 3.684843446662536E-4 0.0 0.001298907314948544 3.1321169296631555E-4 30-31 3.684843446662536E-5 4.6981753944947335E-4 0.0 0.0034269044053961586 3.4084801881628456E-4 32-33 3.684843446662536E-5 5.343022997660677E-4 0.0 0.007378899001941728 3.684843446662536E-4 34-35 3.684843446662536E-5 6.264233859326311E-4 0.0 0.013164103213201911 3.684843446662536E-4 36-37 3.684843446662536E-5 7.185444720991945E-4 0.0 0.02157475838020915 3.684843446662536E-4 38-39 3.684843446662536E-5 7.185444720991945E-4 0.0 0.04195194264025297 3.684843446662536E-4 40-41 3.684843446662536E-5 7.553929065658198E-4 0.0 0.06461372983722757 3.684843446662536E-4 42-43 3.684843446662536E-5 7.830292324157888E-4 0.0 0.07791601467967932 3.776964532829099E-4 44-45 3.684843446662536E-5 8.290897754990706E-4 0.0 0.09293175172482915 3.8690856189956625E-4 46-47 3.684843446662536E-5 8.475139927323833E-4 0.0 0.10815936726816208 3.961206705162226E-4 48-49 3.684843446662536E-5 8.567261013490397E-4 0.0 0.12351595233212821 4.2375699636619166E-4 50-51 4.6060543083281704E-5 9.949077305988847E-4 0.0 0.13867908311514454 4.2375699636619166E-4 52-53 5.527265169993804E-5 0.0010133319478321974 0.0 0.17775684786700074 4.60605430832817E-4 54-55 5.527265169993804E-5 0.0010133319478321974 0.0 0.2233844218452996 4.974538652994424E-4 56-57 5.527265169993804E-5 0.00103175616506551 0.0 0.2849857921648805 4.974538652994424E-4 58-59 5.527265169993804E-5 0.0010409682736821665 0.0 0.32656003835185055 4.974538652994424E-4 60-61 7.369686893325072E-5 0.0010501803822988228 0.0 0.3461726175967119 5.15878082532755E-4 62-63 9.21210861665634E-5 0.0010501803822988228 0.0 0.36173186905024446 5.15878082532755E-4 64-65 9.21210861665634E-5 0.0011607256856986988 0.0 0.3682356177336039 5.15878082532755E-4 66-67 1.1054530339987608E-4 0.0011791499029320115 0.0 0.37484991172036314 5.250901911494114E-4 68-69 1.1054530339987608E-4 0.0011791499029320115 0.0 0.38104966081937286 5.343022997660677E-4 70-71 1.1054530339987608E-4 0.0011791499029320115 0.0 0.38592286627758404 5.527265169993804E-4 72-73 1.2896952063318876E-4 0.0011791499029320115 0.0 0.38964455815871324 6.079991686993184E-4 74-75 1.2896952063318876E-4 0.0011791499029320115 0.0 0.39241740285232674 6.079991686993184E-4 76-77 1.2896952063318876E-4 0.0012252104460152933 0.0 0.3954113381527401 6.172112773159748E-4 78-79 1.2896952063318876E-4 0.0012344225546319495 0.0 0.39716163878990474 6.264233859326311E-4 80-81 1.2896952063318876E-4 0.0012344225546319495 0.0 0.39784333482753736 6.540597117826001E-4 82-83 1.2896952063318876E-4 0.0012344225546319495 0.0 0.39840527345315335 7.001202548658818E-4 84-85 1.2896952063318876E-4 0.0012436346632486057 0.0 0.3986079398427198 7.001202548658818E-4 86-87 1.2896952063318876E-4 0.0012896952063318875 9.21210861665634E-6 0.3987000609288864 7.093323634825381E-4 88 1.2896952063318876E-4 0.001326543640798513 1.842421723331268E-5 0.3987000609288864 7.185444720991945E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8325 0.0 51.934647 1 CTTATAC 9135 0.0 45.384552 1 TATACAC 11555 0.0 40.045517 3 GTATCAA 15135 0.0 38.18201 1 TTATACA 11740 0.0 38.124847 2 TATCAAC 17460 0.0 32.661503 2 TCAACGC 17780 0.0 32.115044 4 ATCAACG 17670 0.0 32.099533 3 CAACGCA 18235 0.0 31.313707 5 GCGCAGA 1420 0.0 31.28178 1 AACGCAG 18810 0.0 30.423943 6 TACACAT 15855 0.0 29.15818 5 GATCAAC 2715 0.0 28.359077 1 ATACACA 17270 0.0 28.018196 4 ACACATC 16390 0.0 27.509628 6 GTGGTAT 3655 0.0 27.084387 1 ACGCAGA 21415 0.0 26.782316 7 ACATCTC 17390 0.0 26.14661 8 TGGTATC 3565 0.0 25.869467 2 CGCAGAG 22160 0.0 25.824656 8 >>END_MODULE