##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140144_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5497180 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.56319039944117 18.0 18.0 32.0 18.0 33.0 2 26.55843632553418 27.0 25.0 30.0 18.0 33.0 3 25.744573399452083 27.0 18.0 30.0 18.0 31.0 4 30.317975216383672 31.0 29.0 33.0 27.0 33.0 5 32.09914956395825 33.0 32.0 33.0 31.0 33.0 6 36.51510301645571 38.0 37.0 38.0 34.0 38.0 7 36.90711364736101 38.0 38.0 38.0 35.0 38.0 8 37.118866946325205 38.0 38.0 38.0 36.0 38.0 9 37.29424832368596 38.0 38.0 38.0 36.0 38.0 10-11 37.28537004427724 38.0 38.0 38.0 36.5 38.0 12-13 37.37582524130555 38.0 38.0 38.0 37.0 38.0 14-15 37.36268741427423 38.0 38.0 38.0 37.0 38.0 16-17 37.38862225723007 38.0 38.0 38.0 37.0 38.0 18-19 37.39675051571897 38.0 38.0 38.0 37.0 38.0 20-21 37.41261454707184 38.0 38.0 38.0 37.0 38.0 22-23 37.350789654308414 38.0 38.0 38.0 37.0 38.0 24-25 37.41053214227563 38.0 38.0 38.0 37.0 38.0 26-27 37.37889895552435 38.0 38.0 38.0 37.0 38.0 28-29 37.35616401084686 38.0 38.0 38.0 37.0 38.0 30-31 37.361941671733895 38.0 38.0 38.0 37.0 38.0 32-33 37.33911720013408 38.0 38.0 38.0 37.0 38.0 34-35 37.24523037459743 38.0 38.0 38.0 37.0 38.0 36-37 37.269733761947236 38.0 38.0 38.0 37.0 38.0 38-39 37.233642266279055 38.0 38.0 38.0 37.0 38.0 40-41 37.287415372149056 38.0 38.0 38.0 37.0 38.0 42-43 37.26803013666532 38.0 38.0 38.0 37.0 38.0 44-45 37.2356845154874 38.0 38.0 38.0 37.0 38.0 46-47 37.198998378009364 38.0 38.0 38.0 37.0 38.0 48-49 37.14670719204304 38.0 38.0 38.0 36.5 38.0 50-51 37.11093543891248 38.0 38.0 38.0 36.0 38.0 52-53 37.019072886698666 38.0 38.0 38.0 36.0 38.0 54-55 37.05134630772588 38.0 38.0 38.0 36.0 38.0 56-57 37.009782885310514 38.0 38.0 38.0 36.0 38.0 58-59 36.983449984658755 38.0 38.0 38.0 36.0 38.0 60-61 36.97416927353314 38.0 38.0 38.0 36.0 38.0 62-63 36.9834998181434 38.0 38.0 38.0 36.0 38.0 64-65 36.989509154009696 38.0 38.0 38.0 36.0 38.0 66-67 36.98117867343735 38.0 38.0 38.0 36.0 38.0 68-69 36.956556462047196 38.0 38.0 38.0 36.0 38.0 70-71 36.956050732692496 38.0 38.0 38.0 36.0 38.0 72-73 36.967668480556625 38.0 38.0 38.0 36.0 38.0 74-75 36.91082172975121 38.0 38.0 38.0 35.5 38.0 76-77 36.91537015217217 38.0 38.0 38.0 35.5 38.0 78-79 36.92210266162339 38.0 38.0 38.0 35.5 38.0 80-81 36.90512686803156 38.0 38.0 38.0 35.0 38.0 82-83 36.856626608652874 38.0 38.0 38.0 35.0 38.0 84-85 36.85537300962976 38.0 38.0 38.0 35.0 38.0 86-87 36.85001550368155 38.0 38.0 38.0 35.0 38.0 88-89 36.83201847695758 38.0 38.0 38.0 35.0 38.0 90-91 36.83933713340046 38.0 38.0 38.0 35.0 38.0 92-93 36.81186048207131 38.0 38.0 38.0 35.0 38.0 94-95 36.74650090110514 38.0 38.0 38.0 35.0 38.0 96-97 36.768423851910306 38.0 38.0 38.0 35.0 38.0 98-99 36.79600652088364 38.0 38.0 38.0 35.0 38.0 100 35.245404448904274 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 9.0 19 34.0 20 91.0 21 202.0 22 496.0 23 1250.0 24 2804.0 25 5517.0 26 9809.0 27 16142.0 28 24837.0 29 35379.0 30 47969.0 31 62426.0 32 82671.0 33 113968.0 34 177009.0 35 357396.0 36 1270507.0 37 3288663.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 53.196584430562574 13.823851502042867 10.70163247337726 22.277931594017296 2 14.49077924998308 19.08847349848522 42.2317882818862 24.188958969645498 3 19.08744119712289 25.114604215252186 30.63838186124522 25.159572726379707 4 12.685576968554788 18.12052725215474 38.65383705827352 30.540058721016962 5 13.645105308540014 37.547269691005205 35.17508977330195 13.63253522715283 6 29.840991199123913 37.4389232297287 18.844261967044922 13.875823604102466 7 26.581174347574578 32.745134778195364 22.36131980397222 18.31237107025784 8 24.209703884537163 36.78702534754183 21.294118075085773 17.709152692835236 9 25.404771173583544 17.30929312847678 20.83635609530705 36.44957960263262 10-11 24.177551035258077 26.63690292113411 28.812482036244035 20.373064007363777 12-13 25.255039856799304 23.96151299393507 28.72868452552036 22.054762623745265 14-15 22.429836752662276 25.45516974157659 26.00211381108132 26.11287969467982 16-17 22.248507416529932 28.941202580232044 26.633382934522793 22.17690706871523 18-19 22.29904241811256 27.70901625924565 28.338302547851807 21.653638774789982 20-21 22.857005902361273 26.90068548596884 28.27706025080033 21.96524836086956 22-23 22.51781973071679 27.285129244496904 28.15261401075674 22.044437014029565 24-25 22.581032795176604 27.54783918610617 28.21383997933245 21.657288039384774 26-27 22.500348212190822 27.825015254468738 28.18816577101912 21.48647076232132 28-29 22.346832443628003 27.56723395374394 28.2363446667876 21.849588935840462 30-31 22.975128049353344 27.26766659173258 28.17592421566838 21.581281143245697 32-33 22.415980828967417 27.49016144734063 28.374587714205262 21.719270009486692 34-35 22.4491321430662 27.1045428733518 28.51328916664903 21.933035816932968 36-37 22.171875056063254 27.57438093057228 28.418317483206785 21.835426530157683 38-39 22.04606005268481 27.011628313836177 28.825494204726525 22.11681742875249 40-41 22.365449439772515 26.81768802046745 28.82935469023976 21.98750784952027 42-43 22.5740497940666 26.798781514224494 28.674393596263254 21.952775095445645 44-45 22.172859290447487 27.221629568876978 28.63267471646341 21.97283642421213 46-47 22.731195377955647 26.762246378973213 28.005990465918458 22.500567777152686 48-49 22.480004198310986 26.854023342916655 28.16000755080841 22.50596490796395 50-51 22.1617360571354 27.107510186453837 28.44660296695878 22.28415078945199 52-53 22.35278071042485 27.149427043529784 28.662019246295227 21.835772999750137 54-55 22.31742696842936 27.10945814449585 28.22048476016657 22.35263012690822 56-57 22.63432986794544 27.64442579284772 27.62183856838389 22.09940577082295 58-59 22.052095940680164 28.07434067912673 28.29836147046053 21.57520190973257 60-61 22.48159332099426 28.617260373403774 27.40547748135926 21.495668824242706 62-63 21.998658911248377 29.06457993283995 27.385578655017767 21.551182500893905 64-65 21.973633234873905 28.95970884433503 27.447335138536722 21.619322782254343 66-67 22.138898540914447 28.852747281006252 27.31647317163762 21.691881006441676 68-69 22.203863791954255 28.489116476940325 27.52264332827149 21.78437640283393 70-71 22.262007744702 28.0289911296926 27.687634542440392 22.021366583165005 72-73 22.574602496308476 27.63210764108451 27.717053753934813 22.076236108672205 74-75 22.300259354459424 27.702540376984658 27.810109006152096 22.18709126240382 76-77 22.50917675346586 27.458029649642313 27.75215290266576 22.28064069422607 78-79 22.49389327085348 27.605308740180632 27.624224495747683 22.2765734932182 80-81 22.520735430231092 27.59654033677131 27.592583558281436 22.290140674716163 82-83 22.481281309019383 27.49147395282651 27.752473774526226 22.274770963627876 84-85 22.580993503186964 27.511493858898767 27.660335691982695 22.247176945931578 86-87 22.448848254519135 27.539779610926 27.7354844974946 22.275887637060265 88-89 22.52556282891175 27.534831934178243 27.6683669185902 22.27123831831981 90-91 22.558135989411802 27.574494205930698 27.630158115047493 22.237211689610007 92-93 22.624136706753387 27.551568227463584 27.635036433567333 22.189258632215694 94-95 22.51770914279909 27.6297054812003 27.61168256818296 22.240902807817644 96-97 22.58398118641761 27.675137548488504 27.736571557673663 22.004309707420227 98-99 23.586169226945316 29.611338115893776 27.93413321057337 18.868359446587537 100 22.52081004269763 30.47456213604874 21.90725612740146 25.09737169385217 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 535.0 1 599.5 2 968.5 3 1410.5 4 1784.0 5 2498.5 6 3158.0 7 3759.0 8 5009.0 9 6026.5 10 5971.0 11 5814.5 12 6344.5 13 7705.5 14 10159.5 15 13012.0 16 15979.5 17 18805.5 18 19643.5 19 18461.5 20 16808.0 21 15473.5 22 15404.0 23 17737.5 24 22301.5 25 28970.5 26 38308.0 27 48704.5 28 58800.0 29 70436.0 30 81945.5 31 92996.5 32 105310.0 33 117566.5 34 130599.0 35 143404.0 36 157060.5 37 169367.0 38 179139.5 39 188222.5 40 198073.5 41 207876.0 42 216537.0 43 234790.0 44 256648.0 45 265351.0 46 260727.5 47 252070.0 48 242342.0 49 233265.0 50 228098.5 51 221986.0 52 213414.5 53 203105.5 54 192239.0 55 179790.0 56 165050.0 57 149015.5 58 132219.5 59 115309.5 60 96645.0 61 78061.5 62 61921.0 63 48003.0 64 36355.5 65 27144.5 66 19786.5 67 14807.5 68 11309.5 69 8312.5 70 6054.0 71 4350.0 72 3096.0 73 2131.5 74 1406.5 75 910.0 76 597.5 77 369.5 78 243.0 79 176.5 80 113.5 81 68.5 82 43.0 83 28.5 84 20.0 85 13.5 86 9.5 87 7.0 88 4.0 89 2.0 90 1.5 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.012078920464674615 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.9109136703055514E-4 26-27 2.092452940733363E-4 28-29 0.003540431914490833 30-31 0.0058953582118057325 32-33 0.004064125878673148 34-35 0.0019145186652745336 36-37 0.0 38-39 0.0 40-41 3.35408643257131E-4 42-43 0.0 44-45 9.448856693064568E-6 46-47 4.669903576974592E-4 48-49 0.0013936506621426523 50-51 0.0027706270519956603 52-53 0.0 54-55 0.0025642726087052635 56-57 0.03887135097296169 58-59 0.06279697987832711 60-61 0.0424355105021096 62-63 0.014113662502527005 64-65 2.1523006915752084E-4 66-67 0.0 68-69 0.0 70-71 0.002769464354703621 72-73 0.0047574480010933486 74-75 0.004223977786461005 76-77 0.0028975192607910557 78-79 0.007866110127321949 80-81 0.015172842275719542 82-83 0.043375152156423895 84-85 0.019644546036775873 86-87 0.0018403421045504137 88-89 0.0010523662103450874 90-91 8.272760965426477E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 33.0 20-21 149.0 22-23 367.0 24-25 448.0 26-27 1602.0 28-29 4345.0 30-31 11974.0 32-33 15398.0 34-35 20760.0 36-37 31808.0 38-39 35169.0 40-41 34446.0 42-43 38264.0 44-45 44522.0 46-47 45022.0 48-49 41859.0 50-51 37636.0 52-53 34930.0 54-55 38123.0 56-57 38611.0 58-59 41580.0 60-61 45027.0 62-63 44740.0 64-65 54329.0 66-67 59939.0 68-69 60213.0 70-71 79875.0 72-73 44683.0 74-75 42131.0 76-77 43876.0 78-79 45355.0 80-81 44715.0 82-83 42247.0 84-85 42358.0 86-87 43452.0 88-89 44999.0 90-91 45634.0 92-93 45193.0 94-95 53194.0 96-97 168130.0 98-99 366380.0 100-101 3563664.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.86752442562984 #Duplication Level Percentage of deduplicated Percentage of total 1 91.54205639869049 80.4357387658432 2 6.083034137961276 10.690023013985051 3 1.3706382410370137 3.613037673690663 4 0.4894004153821739 1.720096118100262 5 0.1976401868278821 0.8683076971792486 6 0.10394370398972783 0.547996556952471 7 0.06477395161715573 0.3984068743105498 8 0.03915566418000858 0.2752409022990931 9 0.026199491592057287 0.20718760206637596 >10 0.0813573961762531 1.067632335920843 >50 0.001337811753325901 0.07981649404469178 >100 4.0272276270496754E-4 0.058923733022233735 >500 5.987802997654543E-5 0.037592232585291215 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.819114527812442E-5 2 0.0 1.819114527812442E-5 0.0 0.0 1.819114527812442E-5 3 0.0 1.819114527812442E-5 0.0 0.0 1.819114527812442E-5 4 0.0 3.638229055624884E-5 0.0 0.0 1.819114527812442E-5 5 0.0 3.638229055624884E-5 0.0 0.0 1.819114527812442E-5 6 0.0 3.638229055624884E-5 0.0 0.0 3.638229055624884E-5 7 0.0 3.638229055624884E-5 0.0 0.0 3.638229055624884E-5 8 0.0 3.638229055624884E-5 0.0 0.0 3.638229055624884E-5 9 1.819114527812442E-5 1.0914687166874652E-4 0.0 0.0 3.638229055624884E-5 10-11 1.819114527812442E-5 1.0914687166874652E-4 0.0 3.638229055624884E-5 3.638229055624884E-5 12-13 3.638229055624884E-5 1.0914687166874652E-4 0.0 7.276458111249768E-5 3.638229055624884E-5 14-15 3.638229055624884E-5 1.637203075031198E-4 0.0 7.276458111249768E-5 5.457343583437326E-5 16-17 3.638229055624884E-5 1.72815880142182E-4 0.0 7.276458111249768E-5 5.457343583437326E-5 18-19 3.638229055624884E-5 1.910070254203064E-4 0.0 8.186015375155988E-5 5.457343583437326E-5 20-21 3.638229055624884E-5 2.0010259805936862E-4 0.0 9.09557263906221E-5 5.457343583437326E-5 22-23 3.638229055624884E-5 2.1829374333749303E-4 0.0 1.0005129902968431E-4 6.366900847343547E-5 24-25 3.638229055624884E-5 2.2738931597655524E-4 0.0 1.910070254203064E-4 7.276458111249768E-5 26-27 3.638229055624884E-5 2.546760338937419E-4 0.0 2.3648488861561747E-4 7.276458111249768E-5 28-29 3.638229055624884E-5 2.546760338937419E-4 0.0 8.276971101546611E-4 7.276458111249768E-5 30-31 3.638229055624884E-5 3.092494697281151E-4 0.0 0.0025740470568546055 7.276458111249768E-5 32-33 3.638229055624884E-5 3.092494697281151E-4 0.0 0.005948504505946686 7.276458111249768E-5 34-35 3.638229055624884E-5 3.6382290556248836E-4 0.0 0.010769158004649657 7.276458111249768E-5 36-37 3.638229055624884E-5 4.1839634139686165E-4 0.0 0.018163858560207233 7.276458111249768E-5 38-39 3.638229055624884E-5 4.1839634139686165E-4 0.0 0.03676430460708945 7.276458111249768E-5 40-41 3.638229055624884E-5 4.5477863195311053E-4 0.0 0.05629249906315602 7.276458111249768E-5 42-43 3.638229055624884E-5 4.5477863195311053E-4 0.0 0.06748005340920255 7.276458111249768E-5 44-45 3.638229055624884E-5 5.002564951484215E-4 0.0 0.0806049647273693 7.276458111249768E-5 46-47 3.638229055624884E-5 5.639255036218571E-4 0.0 0.09458485987360793 7.276458111249768E-5 48-49 3.638229055624884E-5 5.639255036218571E-4 0.0 0.1088649089169356 7.276458111249768E-5 50-51 3.638229055624884E-5 6.548812300124791E-4 0.0 0.12232635642274767 7.276458111249768E-5 52-53 3.638229055624884E-5 6.730723752906035E-4 0.0 0.15877231598746994 8.186015375155988E-5 54-55 3.638229055624884E-5 6.730723752906035E-4 0.0 0.2051870231646044 9.09557263906221E-5 56-57 3.638229055624884E-5 6.730723752906035E-4 0.0 0.2693562881331883 1.0005129902968431E-4 58-59 3.638229055624884E-5 6.730723752906035E-4 0.0 0.31245111129706504 1.0914687166874652E-4 60-61 3.638229055624884E-5 6.730723752906035E-4 0.0 0.3286048483040396 1.0914687166874652E-4 62-63 3.638229055624884E-5 6.730723752906035E-4 0.0 0.33969235135105635 1.0914687166874652E-4 64-65 3.638229055624884E-5 8.186015375155989E-4 0.0 0.3455589957032515 1.0914687166874652E-4 66-67 3.638229055624884E-5 8.458882554327855E-4 0.0 0.3506343252358482 1.0914687166874652E-4 68-69 3.638229055624884E-5 8.6407940071091E-4 0.0 0.35571875034108397 1.0914687166874652E-4 70-71 3.638229055624884E-5 8.731749733499721E-4 0.0 0.3605303082671479 1.0914687166874652E-4 72-73 3.638229055624884E-5 8.731749733499721E-4 0.0 0.36384109670776654 1.0914687166874652E-4 74-75 3.638229055624884E-5 9.186528365452832E-4 0.0 0.366542481781568 1.0914687166874652E-4 76-77 3.638229055624884E-5 9.641306997405942E-4 0.0 0.3694985428892632 1.0914687166874652E-4 78-79 3.638229055624884E-5 9.823218450187186E-4 0.0 0.37159052459624753 1.0914687166874652E-4 80-81 3.638229055624884E-5 9.823218450187186E-4 0.0 0.3722545013988991 1.0914687166874652E-4 82-83 3.638229055624884E-5 9.823218450187186E-4 0.0 0.37271837560349125 1.0914687166874652E-4 84-85 3.638229055624884E-5 9.823218450187186E-4 0.0 0.37292757377418967 1.0914687166874652E-4 86-87 3.638229055624884E-5 9.823218450187186E-4 0.0 0.37300033835530216 1.0914687166874652E-4 88 3.638229055624884E-5 0.001036895280853092 0.0 0.3730094339279412 1.0914687166874652E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6675 0.0 49.65452 1 CTTATAC 8780 0.0 42.34762 1 GTATCAA 12145 0.0 37.75195 1 TATACAC 11265 0.0 37.26471 3 TTATACA 11630 0.0 34.746914 2 TCAACGC 13760 0.0 33.039795 4 ATCAACG 13805 0.0 32.74743 3 TATCAAC 13985 0.0 32.450714 2 CAACGCA 14215 0.0 32.01213 5 AACGCAG 14625 0.0 31.201853 6 TACACAT 14710 0.0 28.537521 5 ACACATC 14560 0.0 27.839342 6 ACGCAGA 16720 0.0 27.241467 7 ATACACA 16320 0.0 26.841728 4 CGCAGAG 17180 0.0 26.487339 8 ACATCTC 15420 0.0 26.176477 8 GTGGTAT 3480 0.0 25.398 1 CACATCT 16350 0.0 24.53162 7 TGGTATC 3295 0.0 23.470991 2 CATCTCC 17310 0.0 23.36748 9 >>END_MODULE