##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140143_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5256793 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.565837574353793 18.0 18.0 32.0 18.0 33.0 2 26.680613256028913 27.0 25.0 30.0 18.0 33.0 3 25.889493270897294 27.0 18.0 30.0 18.0 31.0 4 30.362342211306398 31.0 29.0 33.0 27.0 33.0 5 32.090676387675906 33.0 32.0 33.0 31.0 33.0 6 36.51234526449872 38.0 37.0 38.0 34.0 38.0 7 36.8784993055652 38.0 38.0 38.0 35.0 38.0 8 37.101714676609866 38.0 38.0 38.0 36.0 38.0 9 37.27888143969146 38.0 38.0 38.0 36.0 38.0 10-11 37.272342662151615 38.0 38.0 38.0 36.5 38.0 12-13 37.36712545082145 38.0 38.0 38.0 37.0 38.0 14-15 37.35267120086334 38.0 38.0 38.0 37.0 38.0 16-17 37.37538590543702 38.0 38.0 38.0 37.0 38.0 18-19 37.38551147058672 38.0 38.0 38.0 37.0 38.0 20-21 37.40010414934628 38.0 38.0 38.0 37.0 38.0 22-23 37.33598248604591 38.0 38.0 38.0 37.0 38.0 24-25 37.40012348261146 38.0 38.0 38.0 37.0 38.0 26-27 37.36591172797018 38.0 38.0 38.0 37.0 38.0 28-29 37.32685114038013 38.0 38.0 38.0 37.0 38.0 30-31 37.34061384531239 38.0 38.0 38.0 37.0 38.0 32-33 37.323473403648585 38.0 38.0 38.0 37.0 38.0 34-35 37.2335925462858 38.0 38.0 38.0 37.0 38.0 36-37 37.25379705557963 38.0 38.0 38.0 37.0 38.0 38-39 37.21016531111587 38.0 38.0 38.0 37.0 38.0 40-41 37.26994101500795 38.0 38.0 38.0 37.0 38.0 42-43 37.254412528211304 38.0 38.0 38.0 37.0 38.0 44-45 37.22015241526164 38.0 38.0 38.0 37.0 38.0 46-47 37.186659497589616 38.0 38.0 38.0 37.0 38.0 48-49 37.13392565899872 38.0 38.0 38.0 36.0 38.0 50-51 37.098254878848095 38.0 38.0 38.0 36.0 38.0 52-53 37.003169052044285 38.0 38.0 38.0 36.0 38.0 54-55 37.03766310210614 38.0 38.0 38.0 36.0 38.0 56-57 36.99526641636923 38.0 38.0 38.0 36.0 38.0 58-59 36.9671093125974 38.0 38.0 38.0 36.0 38.0 60-61 36.95798808274653 38.0 38.0 38.0 36.0 38.0 62-63 36.96972936620418 38.0 38.0 38.0 36.0 38.0 64-65 36.979271678051816 38.0 38.0 38.0 36.0 38.0 66-67 36.97302161003976 38.0 38.0 38.0 36.0 38.0 68-69 36.953641587309335 38.0 38.0 38.0 36.0 38.0 70-71 36.95494826557268 38.0 38.0 38.0 36.0 38.0 72-73 36.97242437779783 38.0 38.0 38.0 36.0 38.0 74-75 36.91739524261357 38.0 38.0 38.0 35.5 38.0 76-77 36.921273784165265 38.0 38.0 38.0 35.5 38.0 78-79 36.92243016018534 38.0 38.0 38.0 35.5 38.0 80-81 36.899646923881264 38.0 38.0 38.0 35.0 38.0 82-83 36.85081471093518 38.0 38.0 38.0 35.0 38.0 84-85 36.84956645449326 38.0 38.0 38.0 35.0 38.0 86-87 36.84179668003013 38.0 38.0 38.0 35.0 38.0 88-89 36.81880046764969 38.0 38.0 38.0 35.0 38.0 90-91 36.829856750855996 38.0 38.0 38.0 35.0 38.0 92-93 36.803475435715555 38.0 38.0 38.0 35.0 38.0 94-95 36.73053405913737 38.0 38.0 38.0 35.0 38.0 96-97 36.75545321609394 38.0 38.0 38.0 35.0 38.0 98-99 36.78033418307854 38.0 38.0 38.0 35.0 38.0 100 35.232205377346894 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 23.0 20 88.0 21 217.0 22 474.0 23 1232.0 24 2724.0 25 5425.0 26 10008.0 27 15682.0 28 24360.0 29 34971.0 30 47011.0 31 61579.0 32 80475.0 33 110945.0 34 172248.0 35 345118.0 36 1181824.0 37 3162389.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 52.50438813169931 14.37033948264655 10.86011946827657 22.265152917377574 2 14.324050767776047 19.341050096174154 42.36186975489385 23.973029381155957 3 19.06936415415254 25.18533638284787 30.669839957555872 25.07545950544372 4 12.536654952934231 18.160235717860683 38.90904587644977 30.394063452755322 5 13.517081612306212 37.58489253809309 35.217080071442794 13.680945778157898 6 29.650149815676592 37.94889774050452 18.71523189138321 13.685720552435676 7 26.327858068598097 33.006816132954064 22.421959548340595 18.243366250107243 8 24.080366109146777 37.21137583313629 21.162845864389183 17.545412193327756 9 25.096175557987543 17.594130109365157 20.91339719863422 36.396297134013075 10-11 23.899010290114145 26.963702013756297 28.8137558393492 20.32353185678036 12-13 24.954901210681115 24.299149690695447 28.789568088376317 21.95638101024712 14-15 22.184609513823354 26.00673071966121 26.021911077723626 25.786748688791818 16-17 21.978495253665116 29.47254152864684 26.705654949700318 21.843308267987727 18-19 22.011319448949198 27.97981583067852 28.435626055657888 21.5732386647144 20-21 22.5914874836638 27.313957536339128 28.374807151974707 21.719747828022363 22-23 22.42786681254151 27.54938066922461 28.240478898656363 21.782273619577513 24-25 22.39770047108114 27.50659363301331 28.524561532679364 21.571144363226182 26-27 22.436648217574533 27.77174245502469 28.35881725771023 21.43279206969055 28-29 21.933620148220793 27.397214381073454 28.51562302956735 22.153542441138402 30-31 22.589415507406045 27.392152627467375 28.594678188400625 21.42375367672595 32-33 22.685725994754886 27.30278730546849 28.73298168563643 21.278505014140194 34-35 21.81693341451642 27.540743227399233 29.083924053917492 21.55839930416685 36-37 22.351585003326527 27.529323426822188 28.547461648803413 21.571629921047876 38-39 21.848106967420108 27.42471776080358 28.87735672351984 21.849818548256476 40-41 22.00588352442902 27.220859241294455 28.988776900361167 21.784480333915354 42-43 22.237907246229828 27.22373149788531 28.970734257851287 21.567626998033575 44-45 21.884480888303955 27.63937577510961 28.793819513367723 21.68232382321871 46-47 22.45276119874833 27.209149874558747 28.15902586487657 22.17906306181635 48-49 22.18401680637401 27.2972384359713 28.391715358025937 22.12702939962875 50-51 21.887371316096985 27.70418465289326 28.51379205464878 21.89465197636098 52-53 22.032596977966264 27.816829929407266 28.681904748351066 21.4686683442754 54-55 21.984437888005225 27.844394433773434 28.278322789035975 21.892844889185366 56-57 22.307241530900164 28.30454283397818 27.67649989236554 21.71171574275612 58-59 21.67978179785636 28.631645078760293 28.292986504904505 21.395586618478838 60-61 22.239726360141688 29.027827330658436 27.64386282276773 21.088583486432142 62-63 21.623425630921105 29.403594896198836 27.62159975570612 21.35137971717393 64-65 21.614792256652592 29.313188523887813 27.647782327059723 21.424236892399872 66-67 21.792337205899965 29.232456123831163 27.693530851198805 21.281675819070063 68-69 21.81608639931533 29.11428631190156 27.69226562455743 21.377361664225674 70-71 21.854679965374377 28.64589931905223 27.680031316373466 21.819389399199927 72-73 22.13031966937035 28.24083444625616 27.735507930212204 21.893337954161282 74-75 21.91918498988685 28.313021331246922 27.98023728860681 21.787556390259414 76-77 22.13295559736322 27.825195565357213 27.9711448818034 22.07070395547617 78-79 22.092239104491696 28.010918812049823 27.67163928332637 22.225202800132113 80-81 22.317404029712186 28.13202007303723 27.64403240780009 21.9065434894505 82-83 22.35828567325656 27.823504649937185 27.8123238704597 22.005885806346555 84-85 22.290730472722313 27.746208355347502 27.759334007487656 22.203727164442526 86-87 22.136099699429014 27.983243785415073 27.80386133824011 22.0767951769158 88-89 22.363008954063478 28.038766979604517 27.757174759719987 21.841049306612014 90-91 22.444349495472615 27.960631687822723 27.790953706935884 21.804065109768782 92-93 22.206269224555108 27.77027092710146 27.763675344246973 22.259784504096462 94-95 22.29853068183302 28.10901220359175 27.753194839012945 21.839262275562287 96-97 22.6125073182138 27.91418312446727 27.941517923484533 21.531791633834395 98-99 23.28284340564742 30.044375330049306 28.18342095171125 18.489360312592034 100 22.200099767931118 30.915132192508732 22.243737393454357 24.641030646105797 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 498.0 1 537.5 2 775.0 3 1076.5 4 1446.5 5 2105.5 6 2685.5 7 3258.0 8 4215.5 9 4951.0 10 5001.0 11 5172.5 12 5932.0 13 7247.5 14 9498.0 15 12241.5 16 15126.5 17 17953.5 18 19003.0 19 18038.0 20 16528.5 21 15396.0 22 15692.5 23 18068.5 24 22868.5 25 29840.5 26 39574.0 27 50843.0 28 61135.5 29 71832.5 30 83022.0 31 94006.0 32 105536.0 33 116983.0 34 129693.5 35 142531.0 36 156119.0 37 168698.5 38 177565.0 39 185323.5 40 194906.0 41 204009.0 42 210356.5 43 216018.5 44 219834.0 45 225520.0 46 247460.0 47 264351.0 48 260082.0 49 250217.5 50 237015.5 51 222139.0 52 205107.0 53 187460.5 54 171527.5 55 156540.0 56 141790.0 57 126625.0 58 111340.5 59 96620.5 60 80899.5 61 65284.0 62 51316.0 63 39344.5 64 29568.0 65 21843.0 66 16069.5 67 12273.5 68 9355.5 69 6782.0 70 4921.5 71 3559.5 72 2465.0 73 1644.0 74 1090.5 75 755.0 76 535.0 77 338.0 78 203.5 79 136.0 80 97.5 81 67.0 82 40.5 83 25.0 84 16.5 85 14.5 86 11.5 87 6.0 88 3.0 89 2.5 90 2.0 91 1.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.013373172578794713 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.329385949934216E-4 26-27 2.473530135636025E-4 28-29 0.0036450931716269755 30-31 0.006383334884706015 32-33 0.004449346576218261 34-35 0.0021638992852334267 36-37 0.0 38-39 0.0 40-41 3.0159855014766655E-4 42-43 0.0 44-45 9.859876367010234E-6 46-47 3.181254774367517E-4 48-49 0.001753890479862431 50-51 0.0030596013369751 52-53 0.0 54-55 0.0028855413198772967 56-57 0.039955178472475504 58-59 0.06447418497798144 60-61 0.043995781918767476 62-63 0.014849512112318842 64-65 4.577054607880538E-4 66-67 0.0 68-69 0.0 70-71 0.0027723588532463437 72-73 0.004973041968330011 74-75 0.004656002236689229 76-77 0.003511507769609975 78-79 0.00867629635834899 80-81 0.016914447052088364 82-83 0.044175645744860374 84-85 0.019856150590560732 86-87 0.0019704094654171642 88-89 0.0012057413060324563 90-91 6.0899388972070686E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 38.0 20-21 123.0 22-23 331.0 24-25 440.0 26-27 1440.0 28-29 3803.0 30-31 10796.0 32-33 13639.0 34-35 18882.0 36-37 28877.0 38-39 31455.0 40-41 31334.0 42-43 34692.0 44-45 40912.0 46-47 41315.0 48-49 38170.0 50-51 34112.0 52-53 31635.0 54-55 34371.0 56-57 36540.0 58-59 22880.0 60-61 49169.0 62-63 43380.0 64-65 49721.0 66-67 55319.0 68-69 55864.0 70-71 72579.0 72-73 41061.0 74-75 38456.0 76-77 40201.0 78-79 40841.0 80-81 41124.0 82-83 38422.0 84-85 38238.0 86-87 39604.0 88-89 41285.0 90-91 42086.0 92-93 41607.0 94-95 49376.0 96-97 175462.0 98-99 349188.0 100-101 3458025.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.11592178938605 #Duplication Level Percentage of deduplicated Percentage of total 1 92.06406769185196 82.04374256039823 2 5.907018720475472 10.528188366046628 3 1.2402169176913271 3.315692215165613 4 0.37770669673412044 1.3463872178194094 5 0.17126581375302316 0.7631255431804986 6 0.09043660080729249 0.4835604626664363 7 0.04580430585815175 0.28573250569305186 8 0.025334216926667628 0.1806145675385802 9 0.021022269352118164 0.1686077020276893 >10 0.055480840964370115 0.7053478127460607 >50 0.0010790215696921935 0.06161799999997408 >100 5.08566748451182E-4 0.07545489146257904 >500 5.833726730950842E-5 0.04192815525527057 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 1.902300509074639E-5 0.0 4 0.0 1.902300509074639E-5 0.0 1.902300509074639E-5 0.0 5 0.0 1.902300509074639E-5 0.0 1.902300509074639E-5 0.0 6 0.0 1.902300509074639E-5 0.0 1.902300509074639E-5 0.0 7 0.0 3.804601018149278E-5 0.0 1.902300509074639E-5 0.0 8 0.0 5.7069015272239174E-5 0.0 1.902300509074639E-5 0.0 9 0.0 9.511502545373196E-5 0.0 1.902300509074639E-5 1.902300509074639E-5 10-11 0.0 9.511502545373196E-5 0.0 1.902300509074639E-5 1.902300509074639E-5 12-13 0.0 9.511502545373196E-5 0.0 1.902300509074639E-5 1.902300509074639E-5 14-15 1.902300509074639E-5 1.4267253818059795E-4 0.0 1.902300509074639E-5 3.804601018149278E-5 16-17 2.8534507636119587E-5 1.5218404072597113E-4 0.0 1.902300509074639E-5 7.609202036298557E-5 18-19 3.804601018149278E-5 1.5218404072597113E-4 0.0 1.902300509074639E-5 7.609202036298557E-5 20-21 3.804601018149278E-5 1.5218404072597113E-4 0.0 4.7557512726865975E-5 7.609202036298557E-5 22-23 3.804601018149278E-5 1.9974155345283713E-4 0.0 5.7069015272239174E-5 7.609202036298557E-5 24-25 3.804601018149278E-5 2.092530559982103E-4 0.0 7.609202036298557E-5 7.609202036298557E-5 26-27 3.804601018149278E-5 2.187645585435835E-4 0.0 1.3316103563522475E-4 7.609202036298557E-5 28-29 3.804601018149278E-5 2.472990661797031E-4 0.0 7.989662138113485E-4 7.609202036298557E-5 30-31 3.804601018149278E-5 2.663220712704495E-4 0.0 0.0019023005090746392 7.609202036298557E-5 32-33 3.804601018149278E-5 2.853450763611959E-4 0.0 0.004812820287958838 7.609202036298557E-5 34-35 3.804601018149278E-5 3.2339108654268867E-4 0.0 0.00833207622974692 7.609202036298557E-5 36-37 3.804601018149278E-5 3.5192559417880826E-4 0.0 0.014048489259516211 7.609202036298557E-5 38-39 4.7557512726865975E-5 3.6143709672418144E-4 0.0 0.030779222236827664 7.609202036298557E-5 40-41 5.7069015272239174E-5 3.9948310690567426E-4 0.0 0.04905081862648957 7.609202036298557E-5 42-43 5.7069015272239174E-5 4.0899460945104744E-4 0.0 0.05824844158786545 7.609202036298557E-5 44-45 5.7069015272239174E-5 4.280176145417938E-4 0.0 0.0690154624692279 7.609202036298557E-5 46-47 5.7069015272239174E-5 4.3752911708716703E-4 0.0 0.08058144956440172 9.511502545373195E-5 48-49 5.7069015272239174E-5 4.3752911708716703E-4 0.0 0.09118677490249283 1.1413803054447835E-4 50-51 5.7069015272239174E-5 4.3752911708716703E-4 0.0 0.1017350312253117 1.1413803054447835E-4 52-53 5.7069015272239174E-5 4.3752911708716703E-4 0.0 0.13541526173847818 1.1413803054447835E-4 54-55 5.7069015272239174E-5 4.470406196325402E-4 0.0 0.1790255009090143 1.3316103563522475E-4 56-57 5.7069015272239174E-5 4.565521221779134E-4 0.0 0.23308888137691552 1.6169554327134434E-4 58-59 5.7069015272239174E-5 5.041096349047793E-4 0.0 0.42856928168942543 1.7120704581671754E-4 60-61 5.7069015272239174E-5 5.516671476316454E-4 0.0 0.6009652653243146 1.7120704581671754E-4 62-63 5.7069015272239174E-5 5.706901527223918E-4 0.0 0.6078325701620741 1.7120704581671754E-4 64-65 5.7069015272239174E-5 5.992246603585113E-4 0.0 0.6134443566638443 1.7120704581671754E-4 66-67 5.7069015272239174E-5 6.182476654492577E-4 0.0 0.619018097155433 1.8071854836209072E-4 68-69 5.7069015272239174E-5 6.372706705400042E-4 0.0 0.6248962057284736 1.9974155345283713E-4 70-71 5.7069015272239174E-5 6.562936756307505E-4 0.0 0.6296424454986149 2.282760610889567E-4 72-73 5.7069015272239174E-5 6.658051781761237E-4 0.0 0.6332092589531297 2.282760610889567E-4 74-75 5.7069015272239174E-5 6.75316680721497E-4 0.0 0.6360627097167417 2.282760610889567E-4 76-77 5.7069015272239174E-5 6.848281832668702E-4 0.0 0.6389351834854444 2.282760610889567E-4 78-79 5.7069015272239174E-5 6.848281832668702E-4 0.0 0.6406757884512477 2.282760610889567E-4 80-81 5.7069015272239174E-5 6.848281832668702E-4 0.0 0.6413701281370601 2.377875636343299E-4 82-83 5.7069015272239174E-5 6.943396858122433E-4 0.0 0.6417981457516018 3.0436808145194226E-4 84-85 5.7069015272239174E-5 7.228741934483629E-4 0.0 0.6419503297923277 3.0436808145194226E-4 86-87 7.609202036298557E-5 7.418971985391093E-4 0.0 0.6420644678228722 3.0436808145194226E-4 88 7.609202036298557E-5 8.179892189020949E-4 0.0 0.6420644678228722 3.0436808145194226E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6185 0.0 48.99643 1 GCTCCGA 1620 0.0 41.101284 1 CTTATAC 9605 0.0 36.883022 1 GTATCAA 11410 0.0 36.06095 1 ATCAACG 12440 0.0 32.28237 3 TCAACGC 12520 0.0 32.246532 4 TATACAC 12500 0.0 31.82014 3 TATCAAC 12790 0.0 31.569403 2 CAACGCA 12905 0.0 31.31758 5 TTATACA 12730 0.0 30.57822 2 AACGCAG 13330 0.0 30.319084 6 ACGCAGA 15225 0.0 26.545376 7 CGCAGAG 15850 0.0 25.498634 8 ACACATC 15425 0.0 24.762476 6 TACACAT 16205 0.0 24.729357 5 ACATCTC 15960 0.0 23.932405 8 GATCAAC 2335 0.0 23.763054 1 GTGGTAT 3330 0.0 22.815058 1 ATACACA 18640 0.0 22.803926 4 TGGTATC 3080 0.0 22.726833 2 >>END_MODULE