##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140142_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5201821 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.630876379637055 18.0 18.0 32.0 18.0 33.0 2 26.416134465219006 27.0 25.0 30.0 18.0 33.0 3 25.704768964560678 27.0 18.0 30.0 18.0 31.0 4 30.289764296003266 31.0 29.0 33.0 27.0 33.0 5 32.08635783507353 33.0 32.0 33.0 31.0 33.0 6 36.48036658700867 38.0 37.0 38.0 34.0 38.0 7 36.90308182461488 38.0 38.0 38.0 35.0 38.0 8 37.08999233153159 38.0 38.0 38.0 36.0 38.0 9 37.27066137031628 38.0 38.0 38.0 36.0 38.0 10-11 37.25825523408053 38.0 38.0 38.0 36.5 38.0 12-13 37.343815271613536 38.0 38.0 38.0 37.0 38.0 14-15 37.331179984855304 38.0 38.0 38.0 37.0 38.0 16-17 37.35446702222164 38.0 38.0 38.0 37.0 38.0 18-19 37.365408671309524 38.0 38.0 38.0 37.0 38.0 20-21 37.38237468475887 38.0 38.0 38.0 37.0 38.0 22-23 37.31918626680775 38.0 38.0 38.0 37.0 38.0 24-25 37.37703342342566 38.0 38.0 38.0 37.0 38.0 26-27 37.34979102707513 38.0 38.0 38.0 37.0 38.0 28-29 37.32875042360518 38.0 38.0 38.0 37.0 38.0 30-31 37.33438006503721 38.0 38.0 38.0 37.0 38.0 32-33 37.313963138585784 38.0 38.0 38.0 37.0 38.0 34-35 37.22664456212728 38.0 38.0 38.0 37.0 38.0 36-37 37.25178976736069 38.0 38.0 38.0 37.0 38.0 38-39 37.231961111559656 38.0 38.0 38.0 37.0 38.0 40-41 37.256549657493096 38.0 38.0 38.0 37.0 38.0 42-43 37.230002402789 38.0 38.0 38.0 37.0 38.0 44-45 37.19356240044392 38.0 38.0 38.0 36.5 38.0 46-47 37.15376249640736 38.0 38.0 38.0 36.0 38.0 48-49 37.09822112607036 38.0 38.0 38.0 36.0 38.0 50-51 37.05885216801953 38.0 38.0 38.0 36.0 38.0 52-53 36.96349706517786 38.0 38.0 38.0 36.0 38.0 54-55 36.998397701507514 38.0 38.0 38.0 36.0 38.0 56-57 36.95682705014569 38.0 38.0 38.0 36.0 38.0 58-59 36.93234579747994 38.0 38.0 38.0 36.0 38.0 60-61 36.92205515541987 38.0 38.0 38.0 36.0 38.0 62-63 36.928363956889854 38.0 38.0 38.0 36.0 38.0 64-65 36.93606905432727 38.0 38.0 38.0 36.0 38.0 66-67 36.92810680020821 38.0 38.0 38.0 36.0 38.0 68-69 36.90620095858171 38.0 38.0 38.0 35.0 38.0 70-71 36.9036253158401 38.0 38.0 38.0 35.0 38.0 72-73 36.91669355843375 38.0 38.0 38.0 35.0 38.0 74-75 36.85139750049069 38.0 38.0 38.0 35.0 38.0 76-77 36.84896425339624 38.0 38.0 38.0 35.0 38.0 78-79 36.843396540261644 38.0 38.0 38.0 35.0 38.0 80-81 36.815889650186726 38.0 38.0 38.0 35.0 38.0 82-83 36.73766571387145 38.0 38.0 38.0 35.0 38.0 84-85 36.75474202689652 38.0 38.0 38.0 35.0 38.0 86-87 36.74754384610315 38.0 38.0 38.0 35.0 38.0 88-89 36.72091094377055 38.0 38.0 38.0 34.5 38.0 90-91 36.73440944356831 38.0 38.0 38.0 35.0 38.0 92-93 36.70476996554396 38.0 38.0 38.0 34.0 38.0 94-95 36.60628932489718 38.0 38.0 38.0 34.0 38.0 96-97 36.58359060336715 38.0 38.0 38.0 34.0 38.0 98-99 36.62443676260574 38.0 38.0 38.0 34.0 38.0 100 35.007291552212315 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 11.0 20 53.0 21 136.0 22 460.0 23 1191.0 24 2776.0 25 5688.0 26 9893.0 27 16068.0 28 24885.0 29 35488.0 30 47277.0 31 61868.0 32 81617.0 33 113786.0 34 177100.0 35 349883.0 36 1211098.0 37 3062539.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 53.94393617158298 13.101296642079763 11.18925468600323 21.765512500334015 2 14.585471497067742 19.078874256553497 42.07777410762387 24.25788013875489 3 19.38344283665278 24.912141344348452 30.426460272277726 25.277955546721042 4 12.753168553858352 17.889177655286485 38.98292540246964 30.37472838838553 5 13.705642697047823 37.61946056967358 34.97617468959428 13.698722043684317 6 29.99457305432078 37.5600006228588 18.771195702428052 13.674230620392358 7 26.777084409478913 32.85028454458544 22.401674336737077 17.970956709198568 8 24.274460809012844 36.78181160020693 21.159282489728113 17.784445101052114 9 25.567431097686754 17.351308320682314 20.972636313321814 36.10862426830912 10-11 24.239578793657067 26.772211116068778 28.691375577898587 20.29683451237557 12-13 25.244044345239868 24.154646997657167 28.73733063863597 21.863978018466995 14-15 22.43572971849666 25.654131505101773 26.186195180495446 25.723943595906125 16-17 22.126616813612003 28.957955300653364 26.806622142515092 22.108805743219538 18-19 22.146254167530945 27.84417226198287 28.57034104018574 21.439232530300448 20-21 22.77669470647593 27.01865383924052 28.538213235453846 21.666438218829704 22-23 22.484089210961937 27.233645619826515 28.315605228064815 21.966659941146734 24-25 22.470184393312415 27.212370792308494 28.477997177200194 21.8394476371789 26-27 22.332238532812195 27.41768662067364 28.503110096193872 21.746964750320295 28-29 22.261846046598592 27.191469569185006 28.629468788976748 21.917215595239654 30-31 22.33547592292069 26.91163637567961 28.756900098663614 21.995987602736086 32-33 22.00098528791697 27.417473937475407 28.574208125721732 22.00733264888589 34-35 22.370112408168534 27.26103363057194 28.528474972603245 21.84037898865628 36-37 22.21955153485514 27.282847958016276 28.73335802316929 21.764242483959293 38-39 22.00607711941343 27.228629638228735 28.716348394741015 22.048944847616823 40-41 22.38035560283534 27.019749523539037 28.750115156358596 21.849779717267033 42-43 22.42896900386851 27.012436578412753 28.61206666346326 21.94652775425548 44-45 22.180281301996928 27.33487745266901 28.510532840127144 21.974308405206916 46-47 22.501038768467673 27.031727720476923 28.18537763667111 22.28185587438429 48-49 22.32417810922865 27.293874066095565 28.132509252088184 22.249438572587604 50-51 22.134089821784073 27.466516271939646 28.163964045981775 22.235429860294502 52-53 22.213649507340392 27.396001278930754 28.244608612950422 22.14574060077843 54-55 22.327044792459038 27.151614489894556 28.27535541429197 22.245985303354438 56-57 22.397195604490435 27.15584292144953 28.052910403971925 22.39405107008811 58-59 21.91868455687353 27.25681072956119 28.44082932023176 22.383675393333522 60-61 22.346728756960214 27.79044239129299 28.17697372504682 21.685855126699966 62-63 21.65616103257694 28.269752863697974 28.12913319826114 21.944952905463943 64-65 21.51956087896984 28.491007511198696 27.86314220644906 22.126289403382405 66-67 21.71023296048364 28.922469742757954 27.426873281372178 21.940424015386228 68-69 21.817442403631365 28.73242125054281 27.371136890360777 22.07899945546505 70-71 21.816083245076968 28.061791540217122 27.47710071779937 22.64502449690654 72-73 22.190864322061707 27.35257313941759 27.514815821135475 22.94174671738523 74-75 22.112131633700763 27.39115868362798 27.771943545542317 22.724766137128942 76-77 22.45063559382806 27.235279931139495 27.19477959365507 23.11930488137737 78-79 22.610457374932054 27.3426993227587 26.792276608976728 23.254566693332514 80-81 22.480339911235216 27.62347056846275 26.93439179929218 22.961797721009855 82-83 22.453010648675324 27.324054743889302 27.05719743949379 23.16573716794158 84-85 22.563149167406156 27.695123395240113 26.97505304434054 22.76667439301319 86-87 22.883333075875452 27.575917989135583 27.08116079228475 22.459588142704217 88-89 22.666147197045305 27.78241885390871 27.29819064728994 22.253243301756047 90-91 22.73961439371889 27.36977454344537 27.198026982056362 22.69258408077938 92-93 22.666723763879933 27.036712756849973 27.369877368708934 22.92668611056116 94-95 22.01479527560848 27.525227010433113 27.8396934368842 22.6202842770742 96-97 22.1984226927047 27.320236115452772 28.081815651951285 22.399525539891236 98-99 23.285789753114976 29.241683821384846 28.381376248624402 19.091150176875775 100 22.44556198847709 30.30418797278451 22.049331586583836 25.200918452154557 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 629.0 1 646.5 2 886.5 3 1233.0 4 1679.5 5 2513.5 6 3218.0 7 3775.0 8 4696.0 9 5389.0 10 5357.0 11 5269.0 12 5782.5 13 7066.5 14 9544.0 15 12529.0 16 15494.5 17 18376.0 18 19496.5 19 18249.0 20 16065.5 21 14257.0 22 13695.0 23 15027.5 24 18569.0 25 24190.0 26 32427.5 27 42323.0 28 51780.5 29 62197.0 30 72949.5 31 83108.0 32 94481.0 33 106329.0 34 118998.0 35 130930.0 36 143911.0 37 157328.5 38 166930.5 39 174843.5 40 185077.5 41 194313.0 42 199487.0 43 206019.5 44 217762.0 45 235379.5 46 239652.0 47 234578.5 48 231616.5 49 223829.0 50 216767.5 51 208935.0 52 199189.5 53 189160.0 54 177661.5 55 164788.5 56 150471.0 57 134278.0 58 118415.0 59 103206.0 60 86528.5 61 69285.5 62 53990.5 63 41291.5 64 30732.5 65 22266.5 66 16082.0 67 12098.0 68 9130.5 69 6564.5 70 4699.5 71 3365.0 72 2384.5 73 1608.0 74 1018.5 75 663.0 76 435.0 77 267.0 78 163.5 79 108.0 80 66.5 81 43.5 82 33.0 83 19.5 84 11.5 85 10.0 86 9.0 87 6.5 88 3.5 89 2.0 90 1.5 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.013591394244438629 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.0761924812087896E-4 26-27 3.0765331855059136E-4 28-29 0.0037412433026695643 30-31 0.006430821115735912 32-33 0.004437167917771176 34-35 0.001992275580068927 36-37 0.0 38-39 0.0 40-41 3.328631804078298E-4 42-43 0.0 44-45 0.0 46-47 4.595636443197184E-4 48-49 0.0014194672789637768 50-51 0.002950088157960899 52-53 0.0 54-55 0.002846608662270825 56-57 0.03875738730043506 58-59 0.060625715197164885 60-61 0.042161934591870835 62-63 0.013648428047715648 64-65 3.430946178019529E-4 66-67 0.0 68-69 0.0 70-71 0.0029709888834605477 72-73 0.00519731176372999 74-75 0.004288870294058952 76-77 0.002769082869824532 78-79 0.00805697752058758 80-81 0.015877612577494593 82-83 0.04107209847151744 84-85 0.01836384432168107 86-87 0.0018098577301963233 88-89 0.0012680233818858323 90-91 1.1745818606034439E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 27.0 20-21 135.0 22-23 351.0 24-25 432.0 26-27 1359.0 28-29 3448.0 30-31 9734.0 32-33 12542.0 34-35 17275.0 36-37 26038.0 38-39 15977.0 40-41 28949.0 42-43 32442.0 44-45 38363.0 46-47 38827.0 48-49 35753.0 50-51 18052.0 52-53 3244.0 54-55 2971.0 56-57 3016.0 58-59 19610.0 60-61 37532.0 62-63 36755.0 64-65 43327.0 66-67 48381.0 68-69 48725.0 70-71 60282.0 72-73 39049.0 74-75 37561.0 76-77 38726.0 78-79 39803.0 80-81 40627.0 82-83 37654.0 84-85 37870.0 86-87 38874.0 88-89 40766.0 90-91 41903.0 92-93 42134.0 94-95 50801.0 96-97 179083.0 98-99 403973.0 100-101 3549450.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.11182794192345 #Duplication Level Percentage of deduplicated Percentage of total 1 91.39734553039102 80.5318718372234 2 6.372707172506193 11.230217558162542 3 1.3334046373887705 3.524661599596865 4 0.4420695813122914 1.5580623554778705 5 0.1953955430974356 0.8608329237009965 6 0.09135010630605883 0.4829414909589524 7 0.051623943457408804 0.3184076016521952 8 0.02922876426479946 0.20603198782840407 9 0.018666143985499616 0.148023726047056 >10 0.0660729198589266 0.8726466955167607 >50 0.0012948280477400537 0.07578399452280234 >100 7.489910894555765E-4 0.1251615198307344 >500 6.122552998566535E-5 0.0360095781606828 >1k 3.061276438987181E-5 0.029347131320767644 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 1.9224037120846718E-5 0.0 0.0 0.0 4 0.0 9.61201856042336E-5 0.0 0.0 0.0 5 0.0 9.61201856042336E-5 0.0 0.0 0.0 6 9.61201856042336E-5 9.61201856042336E-5 0.0 0.0 0.0 7 9.61201856042336E-5 9.61201856042336E-5 0.0 0.0 0.0 8 9.61201856042336E-5 1.1534422272508031E-4 0.0 0.0 0.0 9 9.61201856042336E-5 1.3456825984592703E-4 0.0 0.0 0.0 10-11 9.61201856042336E-5 1.3456825984592703E-4 0.0 0.0 0.0 12-13 9.61201856042336E-5 1.3456825984592703E-4 0.0 0.0 0.0 14-15 9.61201856042336E-5 2.0185238976889053E-4 0.0 0.0 3.8448074241693436E-5 16-17 1.5379229696677374E-4 2.2107642688973727E-4 0.0 0.0 3.8448074241693436E-5 18-19 1.5379229696677374E-4 2.3068844545016061E-4 0.0 9.612018560423359E-6 3.8448074241693436E-5 20-21 1.634043155271971E-4 2.3068844545016061E-4 0.0 2.8836055681270077E-5 3.8448074241693436E-5 22-23 1.7301633408762048E-4 2.8836055681270075E-4 0.0 4.806009280211679E-5 6.728412992296352E-5 24-25 1.7301633408762048E-4 3.268086310543942E-4 0.0 5.7672111362540154E-5 1.2495624128550366E-4 26-27 1.7301633408762048E-4 3.4603266817524096E-4 0.0 1.4418027840635037E-4 1.5379229696677374E-4 28-29 1.8262835264804385E-4 3.6525670529608765E-4 0.0 7.401254291525986E-4 1.5379229696677374E-4 30-31 1.922403712084672E-4 4.229288166586278E-4 0.0 0.0025279608813913437 1.5379229696677374E-4 32-33 2.0185238976889053E-4 4.229288166586278E-4 0.0 0.005747987099133168 1.5379229696677374E-4 34-35 2.114644083293139E-4 4.902129465815914E-4 0.0 0.009909991135796483 1.7301633408762048E-4 36-37 2.114644083293139E-4 5.574970765045549E-4 0.0 0.020531271645064297 2.0185238976889053E-4 38-39 2.114644083293139E-4 5.863331321858249E-4 0.0 0.16956561942442847 2.2107642688973727E-4 40-41 2.114644083293139E-4 7.49737447713022E-4 0.0 0.3239442495233881 2.3068844545016061E-4 42-43 2.114644083293139E-4 7.689614848338688E-4 0.0 0.3469073618642394 2.3068844545016061E-4 44-45 2.2107642688973727E-4 8.266335961964089E-4 0.0 0.3763874227890579 2.4030046401058396E-4 46-47 2.3068844545016061E-4 8.650816704381024E-4 0.0 0.40944315461835384 2.499124825710073E-4 48-49 2.3068844545016061E-4 8.650816704381024E-4 0.0 0.44157613266584916 2.6913651969185406E-4 50-51 2.499124825710073E-4 9.515898374819126E-4 0.0 0.47401669530727797 2.6913651969185406E-4 52-53 2.499124825710073E-4 9.612018560423359E-4 0.0 0.9078359289948654 2.7874853825227743E-4 54-55 2.499124825710073E-4 9.612018560423359E-4 0.0 1.4887671067497323 2.883605568127008E-4 56-57 2.499124825710073E-4 9.612018560423359E-4 0.0 2.118460054661627 2.883605568127008E-4 58-59 2.499124825710073E-4 9.612018560423359E-4 0.0 2.767204023360281 2.883605568127008E-4 60-61 2.499124825710073E-4 9.612018560423359E-4 0.0 2.9397878166126823 2.883605568127008E-4 62-63 3.075845939335475E-4 9.996499302840293E-4 0.0 2.9457376561015844 3.075845939335475E-4 64-65 3.075845939335475E-4 0.0011534422272508032 0.0 2.9512837908109484 3.1719661249397086E-4 66-67 3.268086310543942E-4 0.00117266626437165 0.0 2.956233980369567 3.268086310543942E-4 68-69 3.4603266817524096E-4 0.00117266626437165 0.0 2.961136109835383 3.268086310543942E-4 70-71 3.5564468673566433E-4 0.0011822782829320733 0.0 2.9652212177235624 3.268086310543942E-4 72-73 3.74868723856511E-4 0.0011918903014924965 0.0 2.9684220199041835 3.6525670529608765E-4 74-75 3.844807424169344E-4 0.0011918903014924965 0.0 2.971372909602233 3.6525670529608765E-4 76-77 3.844807424169344E-4 0.0012399503942946133 0.0 2.9743045752631625 3.6525670529608765E-4 78-79 3.844807424169344E-4 0.0012495624128550367 0.0 2.975996290529797 3.6525670529608765E-4 80-81 3.844807424169344E-4 0.00125917443141546 0.0 2.976640295773345 3.74868723856511E-4 82-83 3.844807424169344E-4 0.0012687864499758834 0.0 2.9770632245900037 4.229288166586278E-4 84-85 3.940927609773577E-4 0.0012880104870967302 0.0 2.9773035250540145 4.229288166586278E-4 86-87 4.1331679809820444E-4 0.0012880104870967302 0.0 2.977351585146817 4.229288166586278E-4 88 4.4215285377947455E-4 0.001307234524217577 0.0 2.977361197165377 4.229288166586278E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6560 0.0 48.386665 1 GTATCAA 11905 0.0 38.54901 1 TCAACGC 13230 0.0 33.827393 4 ATCAACG 13205 0.0 33.72659 3 TATCAAC 13445 0.0 33.291573 2 CAACGCA 13590 0.0 32.899265 5 AACGCAG 14095 0.0 31.813198 6 ACGCAGA 16260 0.0 27.523762 7 CGCAGAG 16790 0.0 26.654936 8 GTGGTAT 3380 0.0 26.408222 1 GCGCAGA 1285 0.0 25.752089 1 TGGTATC 3260 0.0 24.308369 2 GTCAACG 670 0.0 24.045229 1 GCAGAGT 20070 0.0 22.27708 9 GAGTACT 11170 0.0 21.046303 12-13 GTACATG 15855 0.0 21.008602 1 TACATGG 15385 0.0 20.829666 2 ACATGGG 15620 0.0 19.983583 3 CAGAGTA 19280 0.0 19.723824 10-11 CATGGGG 10900 0.0 18.612068 4 >>END_MODULE