##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140141_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5879279 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.657206436367453 32.0 28.0 33.0 18.0 34.0 2 31.159952776522427 33.0 31.0 33.0 27.0 34.0 3 32.36261963414221 33.0 33.0 33.0 30.0 34.0 4 32.44813573228962 33.0 33.0 34.0 31.0 34.0 5 32.92187596472289 33.0 33.0 34.0 32.0 34.0 6 36.731287458887394 38.0 37.0 38.0 34.0 38.0 7 36.92972794793375 38.0 38.0 38.0 35.0 38.0 8 37.1378434328427 38.0 38.0 38.0 36.0 38.0 9 37.174037666863576 38.0 38.0 38.0 36.0 38.0 10-11 37.26191153711195 38.0 38.0 38.0 36.0 38.0 12-13 37.309148451706406 38.0 38.0 38.0 36.5 38.0 14-15 37.3102689972699 38.0 38.0 38.0 36.5 38.0 16-17 37.35823916504047 38.0 38.0 38.0 37.0 38.0 18-19 37.35728658224929 38.0 38.0 38.0 37.0 38.0 20-21 37.37620388405685 38.0 38.0 38.0 37.0 38.0 22-23 37.31290407259786 38.0 38.0 38.0 37.0 38.0 24-25 37.383564266411724 38.0 38.0 38.0 37.0 38.0 26-27 37.34919515484296 38.0 38.0 38.0 37.0 38.0 28-29 37.31617442423115 38.0 38.0 38.0 37.0 38.0 30-31 37.3318380579265 38.0 38.0 38.0 37.0 38.0 32-33 37.31710592087815 38.0 38.0 38.0 37.0 38.0 34-35 37.22823503958516 38.0 38.0 38.0 37.0 38.0 36-37 37.24968237979368 38.0 38.0 38.0 37.0 38.0 38-39 37.243490841796145 38.0 38.0 38.0 37.0 38.0 40-41 37.27021664725807 38.0 38.0 38.0 37.0 38.0 42-43 37.2501276512655 38.0 38.0 38.0 37.0 38.0 44-45 37.22250004290859 38.0 38.0 38.0 37.0 38.0 46-47 37.1965362956209 38.0 38.0 38.0 37.0 38.0 48-49 37.14494924851585 38.0 38.0 38.0 36.5 38.0 50-51 37.109461704819324 38.0 38.0 38.0 36.0 38.0 52-53 37.01827752221458 38.0 38.0 38.0 36.0 38.0 54-55 37.061635137457635 38.0 38.0 38.0 36.0 38.0 56-57 37.031215837091196 38.0 38.0 38.0 36.0 38.0 58-59 37.014674389142584 38.0 38.0 38.0 36.0 38.0 60-61 37.01356967020614 38.0 38.0 38.0 36.0 38.0 62-63 37.0213237298788 38.0 38.0 38.0 36.0 38.0 64-65 37.03388225890528 38.0 38.0 38.0 36.0 38.0 66-67 37.032720410622034 38.0 38.0 38.0 36.0 38.0 68-69 37.01909677110411 38.0 38.0 38.0 36.0 38.0 70-71 37.02028332121874 38.0 38.0 38.0 36.0 38.0 72-73 37.033529869090955 38.0 38.0 38.0 36.0 38.0 74-75 36.97756581489965 38.0 38.0 38.0 36.0 38.0 76-77 36.98297642033149 38.0 38.0 38.0 36.0 38.0 78-79 36.98902334020111 38.0 38.0 38.0 36.0 38.0 80-81 36.97696254593474 38.0 38.0 38.0 36.0 38.0 82-83 36.932642226674645 38.0 38.0 38.0 36.0 38.0 84-85 36.92947358784134 38.0 38.0 38.0 36.0 38.0 86-87 36.92654627426246 38.0 38.0 38.0 36.0 38.0 88-89 36.91196744231682 38.0 38.0 38.0 35.0 38.0 90-91 36.91944684853988 38.0 38.0 38.0 35.5 38.0 92-93 36.89981007988386 38.0 38.0 38.0 35.0 38.0 94-95 36.83611145851175 38.0 38.0 38.0 35.0 38.0 96-97 36.86568262260693 38.0 38.0 38.0 35.0 38.0 98-99 36.89452940430739 38.0 38.0 38.0 35.0 38.0 100 35.44016886694208 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 2.0 19 9.0 20 16.0 21 93.0 22 350.0 23 1171.0 24 2962.0 25 5868.0 26 10577.0 27 17329.0 28 26923.0 29 38188.0 30 51299.0 31 65950.0 32 85723.0 33 113418.0 34 164719.0 35 286390.0 36 784235.0 37 4224054.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.38260473775781 21.128390062795116 14.230996691941309 24.258008507505767 2 14.753078480847275 20.273402306547013 42.71376864848975 22.259750564115965 3 18.512099868028034 25.93462565732975 30.07181662921593 25.481457845426288 4 12.911106957162605 17.872021382213703 38.43214448574391 30.784727174879777 5 13.701935220288068 36.95243923617165 35.74067500453712 13.604950539003166 6 30.14563520458886 37.88381194360737 18.388411232057535 13.58214161974623 7 26.40927569520004 32.54439872644247 22.91517378236345 18.131151795994032 8 23.719439067273385 37.910720004952985 21.027017088319845 17.342823839453782 9 24.95758408471515 17.51553209160511 21.352465157717468 36.17441866596227 10-11 24.201326387130123 27.07688306678421 28.709600275816133 20.012190270269535 12-13 24.870132885341892 24.30075184389106 29.023856496689476 21.805258774077572 14-15 22.01524200501456 25.91738714900245 26.395881195636406 25.67148965034658 16-17 21.805794554060114 29.129175533258415 27.19028132531217 21.874748587369304 18-19 21.81430750267167 28.035699615548097 28.873004666048335 21.276988215731897 20-21 22.410367976628187 27.289596397888598 28.80575879260143 21.494276832881784 22-23 22.152775102318767 27.357243814841965 28.70792041610099 21.782060666738275 24-25 22.06433591699443 27.447583137741464 28.791638613593594 21.696442331670504 26-27 22.004209232701772 27.674271768974144 28.72961655290159 21.59190244542249 28-29 21.79949867393888 27.54188657431928 28.818335795209983 21.84027895653186 30-31 22.308356692759908 27.4137357430435 28.75716780800659 21.520739756190004 32-33 22.11975838975413 27.53362960915563 28.772246812347696 21.574365188742544 34-35 22.092172997384413 27.60623523670317 28.834707428580124 21.466884337332296 36-37 22.116643959792743 27.403430704699787 28.767688297199008 21.712237038308462 38-39 21.82788446723339 27.422873798287828 28.967882393315293 21.781359341163494 40-41 21.995176592635858 27.302321550021745 28.936383756307656 21.76611810103474 42-43 22.079501160701202 27.34893541234234 28.828077913186373 21.743485513770082 44-45 21.934455896116656 27.561692881069256 28.708023709591508 21.795827513222584 46-47 22.219772216796787 27.386647694769234 28.32396958970615 22.069610498727826 48-49 22.062084989448348 27.513162343363028 28.416559472156738 22.008193195031886 50-51 21.926020916229433 27.72211883484782 28.448695750064086 21.90316449885866 52-53 22.098265152067757 27.772345712709967 28.382602324388888 21.74678681083339 54-55 22.023585311719003 27.68642858476743 28.280119643692448 22.00986645982112 56-57 22.163468642475674 27.88368718560104 28.067134186690456 21.88570998523283 58-59 21.921333328646366 28.09470719931087 28.289617190117628 21.694342281925135 60-61 22.062905386408342 28.26434119623465 28.041756635969474 21.63099678138753 62-63 21.83122240059325 28.44618653899162 28.042980899508922 21.67961016090621 64-65 21.80618531373284 28.415447227986647 28.050776723341585 21.727590734938932 66-67 21.855705255326853 28.47318798261976 27.88213305208179 21.788973709971597 68-69 21.92362096086516 28.302356588493904 27.978116163614743 21.795906287026188 70-71 21.97676959241155 27.85479597907141 28.156007979943826 22.012426448573216 72-73 22.093406718257413 27.857660119522187 28.05639613632524 21.992537025895157 74-75 21.923778532666386 27.997451204398615 28.040728501838043 22.038041761096956 76-77 22.176039823066702 27.777124063504015 27.94942303178198 22.097413081647304 78-79 22.193210189183954 27.812851706733394 27.91244144736548 22.08149665671717 80-81 22.174862346687075 27.812312539761187 27.862392531343072 22.15043258220867 82-83 22.198411746289658 27.780619840387278 27.955453310367535 22.06551510295553 84-85 22.308631674915887 27.782088840655174 27.89309261083126 22.016186873597686 86-87 22.17336500457381 27.752497867172437 27.99943518589265 22.0747019423611 88-89 22.219539510165916 27.80155620040136 27.89538361041307 22.08352067901965 90-91 22.302579578506496 27.73152199451811 27.955511855938926 22.01038657103647 92-93 22.36590129575764 27.78918259763262 27.846316189952695 21.99859991665704 94-95 22.21135050900096 27.902888724424713 27.887694994458695 21.99806577211563 96-97 22.315708269106953 27.970104943378082 27.97524939108192 21.73893739643304 98-99 23.314182761296358 29.870676868279944 28.224755983607587 18.59038438681611 100 22.215435366458344 30.728098475124376 22.28360417731539 24.772861981101894 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 953.0 1 863.5 2 1047.0 3 1495.5 4 2006.5 5 2795.5 6 3527.5 7 4472.5 8 5575.5 9 6087.5 10 6004.0 11 6019.0 12 6804.0 13 8601.0 14 11901.0 15 15617.0 16 18354.0 17 19903.5 18 20095.0 19 19125.5 20 17759.0 21 17033.5 22 17959.5 23 20828.5 24 26077.5 25 34271.0 26 44918.5 27 57139.0 28 69095.0 29 81597.5 30 94515.5 31 107989.5 32 122268.5 33 136342.5 34 151501.5 35 165604.0 36 179987.0 37 193375.0 38 202725.5 39 210755.5 40 221403.5 41 231376.5 42 237919.0 43 244317.5 44 252836.0 45 264756.0 46 267269.5 47 263422.0 48 259574.0 49 249914.5 50 239838.5 51 229871.5 52 217933.0 53 204259.5 54 189988.0 55 174366.5 56 157806.5 57 141350.5 58 124347.0 59 107874.5 60 90344.5 61 72438.5 62 56824.5 63 43633.0 64 32569.5 65 23649.0 66 17194.5 67 13049.5 68 9951.5 69 7196.0 70 5170.0 71 3753.0 72 2621.0 73 1718.0 74 1112.5 75 742.0 76 496.5 77 309.0 78 198.0 79 138.5 80 97.5 81 68.5 82 41.0 83 21.5 84 13.5 85 10.0 86 6.5 87 5.0 88 4.0 89 2.5 90 1.5 91 0.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.017944377193189844 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 5.273212810368974E-4 26-27 3.4874093464952135E-4 28-29 0.003735004255692776 30-31 0.005866654768738854 32-33 0.004017860798781437 34-35 0.0021463319528969922 36-37 0.0 38-39 0.0 40-41 3.7307217124533227E-4 42-43 0.0 44-45 0.0 46-47 3.3650563691218886E-4 48-49 0.0013655733600735802 50-51 0.0024366397245644033 52-53 0.0 54-55 0.003088012735365325 56-57 0.04108155872864777 58-59 0.06522960617995051 60-61 0.044172872058808176 62-63 0.013892959540656271 64-65 4.2652447667579336E-4 66-67 0.0 68-69 9.665833761771416E-6 70-71 0.003038899773665481 72-73 0.005295131462505431 74-75 0.004116257052578556 76-77 0.002976825613733947 78-79 0.007757000388256144 80-81 0.01608905687773855 82-83 0.04458978639152028 84-85 0.020205983960859975 86-87 0.0017412687770773892 88-89 0.0011619028472269375 90-91 7.541015042170433E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 33.0 20-21 134.0 22-23 274.0 24-25 382.0 26-27 1072.0 28-29 2770.0 30-31 10331.0 32-33 13085.0 34-35 18368.0 36-37 29055.0 38-39 32655.0 40-41 32649.0 42-43 36744.0 44-45 44066.0 46-47 44864.0 48-49 42097.0 50-51 37316.0 52-53 35073.0 54-55 38729.0 56-57 40277.0 58-59 43170.0 60-61 45992.0 62-63 43714.0 64-65 47848.0 66-67 52403.0 68-69 53211.0 70-71 60127.0 72-73 45240.0 74-75 44297.0 76-77 46762.0 78-79 48283.0 80-81 48249.0 82-83 45636.0 84-85 45042.0 86-87 46527.0 88-89 48968.0 90-91 49701.0 92-93 49546.0 94-95 57808.0 96-97 180821.0 98-99 393345.0 100-101 3922615.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.33366403019207 #Duplication Level Percentage of deduplicated Percentage of total 1 90.8425846035397 79.33615763399835 2 6.645987761567198 11.608369246349557 3 1.5157980291289008 3.9714058744071217 4 0.4771078703540952 1.666703138226599 5 0.21253457733475864 0.9280711685876343 6 0.10837514431880763 0.5678879065897394 7 0.06326679050461617 0.3867724438339087 8 0.03652846701407629 0.25521318925962333 9 0.024089885774548868 0.18934721916841388 >10 0.07237225094449692 0.9207113767360464 >50 8.367133790232017E-4 0.04848452696552043 >100 4.6194068081784924E-4 0.08243476245896268 >500 5.5965458928705826E-5 0.038441513418515524 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 1.7008888334777104E-5 0.0 4 0.0 5.1026665004331315E-5 0.0 3.401777666955421E-5 0.0 5 0.0 5.1026665004331315E-5 0.0 5.1026665004331315E-5 0.0 6 5.1026665004331315E-5 5.1026665004331315E-5 0.0 5.1026665004331315E-5 0.0 7 5.1026665004331315E-5 5.1026665004331315E-5 0.0 5.1026665004331315E-5 0.0 8 5.1026665004331315E-5 8.504444167388553E-5 0.0 6.803555333910841E-5 0.0 9 5.1026665004331315E-5 1.5307999501299393E-4 0.0 6.803555333910841E-5 0.0 10-11 5.9531109171719865E-5 1.5307999501299393E-4 0.0 6.803555333910841E-5 0.0 12-13 6.803555333910841E-5 1.6158443918038248E-4 0.0 8.504444167388553E-5 0.0 14-15 6.803555333910841E-5 2.7214221335643366E-4 0.0 1.1055777417605118E-4 2.5513332502165657E-5 16-17 1.7008888334777106E-4 2.8915110169121076E-4 0.0 1.1906221834343973E-4 3.401777666955421E-5 18-19 1.785933275151596E-4 3.1466443419337644E-4 0.0 1.3607110667821683E-4 6.803555333910841E-5 20-21 1.8709777168254816E-4 3.401777666955421E-4 0.0 1.4457555084560538E-4 6.803555333910841E-5 22-23 1.956022158499367E-4 3.401777666955421E-4 0.0 1.5307999501299393E-4 6.803555333910841E-5 24-25 2.3812443668687946E-4 3.571866550303192E-4 0.0 1.7008888334777106E-4 6.803555333910841E-5 26-27 2.3812443668687946E-4 3.741955433650963E-4 0.0 2.126111041847138E-4 6.803555333910841E-5 28-29 2.3812443668687946E-4 3.8269998753248484E-4 0.0 4.5923998503898187E-4 6.803555333910841E-5 30-31 2.7214221335643366E-4 4.082133200346505E-4 0.0 0.0013947288434517226 6.803555333910841E-5 32-33 2.7214221335643366E-4 4.082133200346505E-4 0.0 0.0038014865428226824 8.504444167388553E-5 34-35 2.7214221335643366E-4 4.8475331754114744E-4 0.0 0.00722877754228027 8.504444167388553E-5 36-37 2.7214221335643366E-4 5.442844267128673E-4 0.0 0.013096844017778369 9.354888584127408E-5 38-39 2.7214221335643366E-4 5.69797759215033E-4 0.0 0.029476403484168724 1.1055777417605118E-4 40-41 2.7214221335643366E-4 5.953110917171987E-4 0.0 0.04720816957317385 1.1906221834343973E-4 42-43 2.7214221335643366E-4 6.038155358845872E-4 0.0 0.05692024481233158 1.1906221834343973E-4 44-45 2.7214221335643366E-4 6.803555333910842E-4 0.0 0.06821414666662358 1.2756666251082828E-4 46-47 2.7214221335643366E-4 7.483910867301926E-4 0.0 0.08004382850346106 1.6158443918038248E-4 48-49 2.7214221335643366E-4 7.568955308975812E-4 0.0 0.09205210366781369 1.8709777168254816E-4 50-51 2.8064665752382224E-4 8.249310842366896E-4 0.0 0.10424747660384888 2.0410666001732526E-4 52-53 2.8915110169121076E-4 8.334355284040781E-4 0.0 0.14205823537205836 2.126111041847138E-4 54-55 2.976555458585993E-4 8.419399725714666E-4 0.0 0.19030394713365362 2.2111554835210236E-4 56-57 3.0615999002598786E-4 8.504444167388552E-4 0.0 0.25500575835914574 2.2111554835210236E-4 58-59 3.1466443419337644E-4 8.589488609062438E-4 0.0 0.2949766459458719 2.2111554835210236E-4 60-61 3.3167332252815354E-4 8.844621934084094E-4 0.0 0.30987643212713667 2.3812443668687946E-4 62-63 3.571866550303192E-4 9.014710817431866E-4 0.0 0.3224970272715413 2.3812443668687946E-4 64-65 3.571866550303192E-4 0.0010035244117518492 0.0 0.3293771226029586 2.3812443668687946E-4 66-67 3.912044316998734E-4 0.0010205333000866262 0.0 0.33543228685013926 2.3812443668687946E-4 68-69 3.912044316998734E-4 0.0010460466325887918 0.0 0.3410792377772853 2.3812443668687946E-4 70-71 4.1671776420203904E-4 0.0010800644092583461 0.0 0.3455780887418338 2.5513332502165656E-4 72-73 4.337266525368162E-4 0.0010885688534257346 0.0 0.34925200862214567 3.0615999002598786E-4 74-75 4.422310967042047E-4 0.001156604406764843 0.0 0.35248369740575336 3.0615999002598786E-4 76-77 4.592399850389818E-4 0.0012671621809408943 0.0 0.35541773064350235 3.1466443419337644E-4 78-79 4.592399850389818E-4 0.0012926755134430598 0.0 0.3575268327970147 3.2316887836076496E-4 80-81 4.592399850389818E-4 0.0012926755134430598 0.0 0.35807111722372764 3.3167332252815354E-4 82-83 4.592399850389818E-4 0.0012926755134430598 0.0 0.3584708260995949 3.401777666955421E-4 84-85 4.592399850389818E-4 0.0012926755134430598 0.0 0.35873446386878394 3.401777666955421E-4 86-87 4.592399850389818E-4 0.001309684401777837 0.0 0.35891305719629907 3.401777666955421E-4 88 4.592399850389818E-4 0.0013437021784473912 0.0 0.35892156164046646 3.401777666955421E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6465 0.0 47.92399 1 GTATCAA 11415 0.0 36.87885 1 TCAACGC 13485 0.0 30.448626 4 ATCAACG 13530 0.0 30.315643 3 CAACGCA 14050 0.0 29.254717 5 TATCAAC 14495 0.0 28.628098 2 AACGCAG 14615 0.0 28.241186 6 CTTATAC 6570 0.0 25.211937 1 ACGCAGA 17275 0.0 23.86778 7 CGCAGAG 17510 0.0 23.522951 8 TATACAC 8845 0.0 20.858225 3 GCAGAGT 20765 0.0 19.752983 9 TACATGG 14490 0.0 19.634933 2 TGGTATC 3250 0.0 19.409676 2 GTACATG 14990 0.0 19.409409 1 ACATGGG 14545 0.0 18.731249 3 GAGTACT 12695 0.0 18.605072 12-13 GTGGTAT 3670 0.0 18.474611 1 TTATACA 9610 0.0 18.04024 2 CAGAGTA 20275 0.0 17.765055 10-11 >>END_MODULE