##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140140_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5030141 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.913314954789538 33.0 30.0 33.0 18.0 34.0 2 31.294078833973042 33.0 31.0 33.0 27.0 34.0 3 32.42248537367044 33.0 33.0 34.0 31.0 34.0 4 32.508104245984356 33.0 33.0 34.0 31.0 34.0 5 32.952275890477026 33.0 33.0 34.0 32.0 34.0 6 36.75574342747052 38.0 37.0 38.0 34.0 38.0 7 36.98781326408147 38.0 38.0 38.0 35.0 38.0 8 37.170218687706765 38.0 38.0 38.0 36.0 38.0 9 37.225392687799406 38.0 38.0 38.0 36.0 38.0 10-11 37.29175265663527 38.0 38.0 38.0 36.5 38.0 12-13 37.340164619639886 38.0 38.0 38.0 37.0 38.0 14-15 37.33636353334827 38.0 38.0 38.0 37.0 38.0 16-17 37.37305057651466 38.0 38.0 38.0 37.0 38.0 18-19 37.376521453374764 38.0 38.0 38.0 37.0 38.0 20-21 37.39886420656015 38.0 38.0 38.0 37.0 38.0 22-23 37.32337602891093 38.0 38.0 38.0 37.0 38.0 24-25 37.39531218836372 38.0 38.0 38.0 37.0 38.0 26-27 37.363033882669114 38.0 38.0 38.0 37.0 38.0 28-29 37.32722986700035 38.0 38.0 38.0 37.0 38.0 30-31 37.34746759819171 38.0 38.0 38.0 37.0 38.0 32-33 37.325971629278385 38.0 38.0 38.0 37.0 38.0 34-35 37.23395739901498 38.0 38.0 38.0 37.0 38.0 36-37 37.25060260116092 38.0 38.0 38.0 37.0 38.0 38-39 37.19317930419264 38.0 38.0 38.0 37.0 38.0 40-41 37.28383803730275 38.0 38.0 38.0 37.0 38.0 42-43 37.27733373149502 38.0 38.0 38.0 37.0 38.0 44-45 37.240353754186714 38.0 38.0 38.0 37.0 38.0 46-47 37.211713280913656 38.0 38.0 38.0 37.0 38.0 48-49 37.15841198822217 38.0 38.0 38.0 36.5 38.0 50-51 37.11465460520853 38.0 38.0 38.0 36.0 38.0 52-53 37.01079918771383 38.0 38.0 38.0 36.0 38.0 54-55 37.047889194390486 38.0 38.0 38.0 36.0 38.0 56-57 37.01120637158303 38.0 38.0 38.0 36.0 38.0 58-59 36.974595819205454 38.0 38.0 38.0 36.0 38.0 60-61 36.945210726327765 38.0 38.0 38.0 36.0 38.0 62-63 36.955735131684975 38.0 38.0 38.0 36.0 38.0 64-65 36.96192202320546 38.0 38.0 38.0 36.0 38.0 66-67 36.946086270130856 38.0 38.0 38.0 36.0 38.0 68-69 36.92144300867826 38.0 38.0 38.0 36.0 38.0 70-71 36.922737817307514 38.0 38.0 38.0 36.0 38.0 72-73 36.93142792259655 38.0 38.0 38.0 36.0 38.0 74-75 36.88909640638518 38.0 38.0 38.0 36.0 38.0 76-77 36.9102148276169 38.0 38.0 38.0 36.0 38.0 78-79 36.926725991299875 38.0 38.0 38.0 36.0 38.0 80-81 36.92093469338403 38.0 38.0 38.0 36.0 38.0 82-83 36.882881096640475 38.0 38.0 38.0 36.0 38.0 84-85 36.88569438350629 38.0 38.0 38.0 35.5 38.0 86-87 36.89071298452273 38.0 38.0 38.0 35.0 38.0 88-89 36.88207140169334 38.0 38.0 38.0 35.0 38.0 90-91 36.89930638780149 38.0 38.0 38.0 35.0 38.0 92-93 36.883244625806725 38.0 38.0 38.0 35.0 38.0 94-95 36.817566148852265 38.0 38.0 38.0 35.0 38.0 96-97 36.85823966188294 38.0 38.0 38.0 35.0 38.0 98-99 36.890500250997405 38.0 38.0 38.0 35.0 38.0 100 35.492192650823064 38.0 36.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 4.0 18 5.0 19 16.0 20 44.0 21 132.0 22 372.0 23 1126.0 24 2778.0 25 5496.0 26 9885.0 27 15928.0 28 24072.0 29 33749.0 30 45312.0 31 57027.0 32 71863.0 33 94935.0 34 138492.0 35 242156.0 36 681852.0 37 3604897.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.645616494646966 22.116576851424245 14.453471582605737 24.78433507132305 2 14.080624613379692 20.478254912998377 43.54537209899309 21.89574837462884 3 17.348479893505967 27.220350284415485 31.64756216575241 23.783607656326136 4 12.252340441351445 19.495596644308776 37.81220049298817 30.43986242135161 5 13.061721331469634 37.76874246666247 36.21413395767634 12.955402244191564 6 28.6912633264157 38.74799931055611 18.570195149599186 13.990542213429007 7 25.32718267738419 33.453376356646864 22.173116021996204 19.046324943972742 8 23.672656492134116 37.786893051308105 21.617187271688806 16.923263184868972 9 24.422178225222712 17.70652154681151 20.61246394484767 37.25883628311811 10-11 23.532541135526817 27.23314316636452 29.001214876481598 20.23310082162707 12-13 24.76087648437688 24.259240446738968 28.700438019530665 22.279445049353487 14-15 22.0593617554657 26.22442392767916 25.54243509277374 26.173779224081393 16-17 22.071130809255646 30.008144900908345 26.158898925497315 21.761825364338694 18-19 22.047185158427965 28.099361429431102 27.882637882317812 21.97081552982312 20-21 22.317270459550574 27.098836946349238 28.007003868230658 22.57688872586953 22-23 21.81651631501777 28.02343994632073 28.059315589353613 22.100728149307887 24-25 21.90254432492091 28.20688986017914 28.513371191251945 21.377194623648005 26-27 21.68410272726369 28.08100261491196 28.794684669457233 21.44020998836712 28-29 20.681032415389172 27.080140236486695 28.99182570522825 23.247001642895885 30-31 21.098988405415792 26.90861909337599 29.544056960240976 22.448335540967236 32-33 21.058255588736255 27.53622219058775 29.473689359563675 21.931832861112316 34-35 21.181242782242123 28.482419214187203 29.728189703206198 20.60814830036448 36-37 21.580621170148735 27.79881126668013 28.46976363455469 22.150803928616448 38-39 21.75790826323512 27.133734936098985 29.128301248654488 21.980055552011407 40-41 21.74940705472556 27.080269854985527 29.507437043575933 21.66288604671298 42-43 22.41514745407441 26.815012945523627 29.577460738211194 21.192378862190772 44-45 21.47422221301628 27.625636936078546 29.37666224781474 21.523478603090435 46-47 22.667565139451103 26.705716641113998 28.290508476915093 22.336209742519806 48-49 22.213809024754173 26.798698075859072 28.70327110813871 22.284221791248036 50-51 21.540628263048845 27.350038866655556 29.246780600336088 21.86255226995951 52-53 21.750575275746893 27.763990745836793 29.73661747403633 20.748816504379988 54-55 21.58279203589354 27.9997004837641 28.673914556186524 21.743592924155834 56-57 22.413267290299853 28.86565160599497 27.46060220015556 21.26047890354962 58-59 21.097931946754255 30.013180631193926 28.715799914476065 20.173087507575755 60-61 21.987276562636428 31.10982209544636 26.786166946313855 20.116734395603356 62-63 21.06613657910579 31.91728444127221 26.784269142451343 20.232309837170657 64-65 21.156133950265385 31.657654722904116 26.86424962707822 20.321961699752283 66-67 21.41699762267771 31.451359893229036 26.73564222458049 20.396000259512764 68-69 21.599299489325073 30.566034439571393 27.201637861572653 20.63302820953088 70-71 21.850557475024836 29.46415410702214 27.59021991063671 21.095068507316313 72-73 22.24324697579578 28.778553586124367 27.775585448370478 21.202613989709373 74-75 21.954865826251986 28.757189157274137 27.886356958063775 21.401588058410102 76-77 22.04591508373929 28.40805535553533 27.964953939995947 21.581075620729443 78-79 21.992440332020802 28.459558295437237 27.95668731883445 21.59131405370751 80-81 22.10518836192615 28.368828379010523 27.943868714972332 21.582114544090995 82-83 22.063254591022265 28.242127624825102 28.0600899990271 21.63452778512553 84-85 22.166529405631636 28.199915431756168 28.043798556968767 21.58975660564343 86-87 21.998015577741352 28.233637900708068 28.084872786925917 21.683473734624652 88-89 22.07608755815665 28.212643623208333 28.049528248843604 21.661740569791416 90-91 22.129613335025446 28.112010527823855 28.159243423074926 21.599132714075772 92-93 22.163639210881595 28.165045147964875 28.035199476809282 21.636116164344248 94-95 21.9852047926704 28.319170681606604 28.072602519270035 21.62302200645296 96-97 22.083399762928053 28.33787043912875 28.193899390211847 21.384830407731354 98-99 23.08917842995497 30.292696575035766 28.446984890206924 18.171140104802344 100 29.112593846054985 41.268830793286995 29.618575360658024 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1215.0 1 1034.0 2 897.0 3 1029.0 4 1369.0 5 1993.5 6 2485.0 7 3015.0 8 3693.0 9 4144.5 10 4359.0 11 4651.0 12 5413.0 13 6876.0 14 9656.5 15 12961.0 16 15582.5 17 17175.0 18 17523.5 19 16969.0 20 16232.5 21 15732.0 22 16456.5 23 19338.0 24 24421.5 25 31762.5 26 41728.5 27 53115.0 28 63915.0 29 75584.0 30 87441.0 31 98857.5 32 112140.5 33 126496.0 34 140310.0 35 152268.5 36 165302.5 37 177750.0 38 186147.5 39 193365.5 40 202908.0 41 211394.5 42 219477.0 43 244679.0 44 282951.0 45 298177.0 46 282103.0 47 256614.5 48 227015.0 49 204840.5 50 195198.5 51 185259.5 52 173105.0 53 160236.5 54 147359.0 55 133770.5 56 119473.5 57 105378.5 58 91839.0 59 78187.0 60 64863.0 61 52049.5 62 40258.5 63 30554.0 64 22967.5 65 17252.5 66 12749.5 67 9677.0 68 7275.0 69 5291.0 70 3860.0 71 2736.0 72 1902.5 73 1282.5 74 852.0 75 575.5 76 380.0 77 243.0 78 153.5 79 94.0 80 62.5 81 45.5 82 39.0 83 32.0 84 21.0 85 12.0 86 6.5 87 4.0 88 2.5 89 1.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.019522315577237298 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.181216190879334E-4 26-27 1.8890963249221818E-4 28-29 0.002814835915953575 30-31 0.00513832295694155 32-33 0.00329422456549178 34-35 0.0016122653941052574 36-37 0.0 38-39 0.0 40-41 3.2633937071367263E-4 42-43 0.0 44-45 0.0 46-47 2.4043776399151776E-4 48-49 0.0012869283835957983 50-51 0.0025534517241225223 52-53 0.0 54-55 0.0027444096699166674 56-57 0.03791632781672555 58-59 0.06047044023470007 60-61 0.040804232521862785 62-63 0.013493692768664717 64-65 3.421812273903754E-4 66-67 0.0 68-69 2.36084695856808E-5 70-71 0.0027719616799196565 72-73 0.005058650187200827 74-75 0.004442951015531661 76-77 0.003207768687422565 78-79 0.008091083206486098 80-81 0.01628105450266398 82-83 0.04324729655577333 84-85 0.01988748500706065 86-87 0.0021696660191833084 88-89 0.0014140416218437917 90-91 1.499454743729553E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 41.0 20-21 150.0 22-23 351.0 24-25 523.0 26-27 1402.0 28-29 3810.0 30-31 11824.0 32-33 14618.0 34-35 19861.0 36-37 31147.0 38-39 35173.0 40-41 34210.0 42-43 38436.0 44-45 44182.0 46-47 43939.0 48-49 41360.0 50-51 37308.0 52-53 35060.0 54-55 37841.0 56-57 40518.0 58-59 45206.0 60-61 59764.0 62-63 55748.0 64-65 65555.0 66-67 77325.0 68-69 75493.0 70-71 104373.0 72-73 46975.0 74-75 42321.0 76-77 44088.0 78-79 45349.0 80-81 44749.0 82-83 42267.0 84-85 41906.0 86-87 43542.0 88-89 44542.0 90-91 44384.0 92-93 43825.0 94-95 50560.0 96-97 145209.0 98-99 1060931.0 100-101 2334275.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.54646702445297 #Duplication Level Percentage of deduplicated Percentage of total 1 91.5614777249876 81.07445368085799 2 6.266746360419419 11.097964999069774 3 1.2997790950976438 3.452725403494105 4 0.4479984669952678 1.5867472593920784 5 0.18487058182124053 0.8184818438512955 6 0.08909893351018149 0.4733637466783927 7 0.048709758244385774 0.30191539015089064 8 0.02761741214113281 0.19563394187644348 9 0.021127918021922026 0.16837222467811178 >10 0.05086671731012356 0.6503808447306314 >50 9.476267606109093E-4 0.058535030192942164 >100 7.594046904447803E-4 0.12142563502737722 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.976031685791711E-5 0.0 0.0 0.0 3 0.0 3.976031685791711E-5 0.0 0.0 0.0 4 0.0 5.964047528687566E-5 0.0 0.0 0.0 5 0.0 5.964047528687566E-5 0.0 0.0 0.0 6 1.9880158428958554E-5 5.964047528687566E-5 0.0 0.0 0.0 7 1.9880158428958554E-5 5.964047528687566E-5 0.0 3.976031685791711E-5 0.0 8 1.9880158428958554E-5 9.940079214479276E-5 0.0 3.976031685791711E-5 0.0 9 1.9880158428958554E-5 1.5904126743166843E-4 0.0 9.940079214479276E-5 3.976031685791711E-5 10-11 1.9880158428958554E-5 1.5904126743166843E-4 0.0 9.940079214479276E-5 3.976031685791711E-5 12-13 1.9880158428958554E-5 1.5904126743166843E-4 0.0 1.0934087135927204E-4 3.976031685791711E-5 14-15 2.982023764343783E-5 1.5904126743166843E-4 0.0 1.1928095057375131E-4 5.964047528687566E-5 16-17 5.964047528687566E-5 1.5904126743166843E-4 0.0 1.3916110900270986E-4 7.952063371583421E-5 18-19 5.964047528687566E-5 1.7892142586062697E-4 0.0 1.5904126743166843E-4 7.952063371583421E-5 20-21 5.964047528687566E-5 1.9880158428958552E-4 0.0 1.8886150507510624E-4 9.940079214479276E-5 22-23 5.964047528687566E-5 2.783222180054197E-4 0.0 2.0874166350406481E-4 9.940079214479276E-5 24-25 5.964047528687566E-5 3.180825348633368E-4 0.0 2.783222180054197E-4 9.940079214479276E-5 26-27 5.964047528687566E-5 3.379626932922954E-4 0.0 3.8766308936469176E-4 9.940079214479276E-5 28-29 5.964047528687566E-5 3.379626932922954E-4 0.0 7.156857034425078E-4 9.940079214479276E-5 30-31 5.964047528687566E-5 4.075432477936503E-4 0.0 0.0026142408334080495 1.0934087135927204E-4 32-33 5.964047528687566E-5 4.174833270081296E-4 0.0 0.0064312312517680915 1.1928095057375131E-4 34-35 5.964047528687566E-5 4.6718372308052593E-4 0.0 0.01085456650221137 1.1928095057375131E-4 36-37 5.964047528687566E-5 5.367642775818809E-4 0.0 0.017951783061349574 1.1928095057375131E-4 38-39 5.964047528687566E-5 5.566444360108394E-4 0.0 0.03391555027980329 1.1928095057375131E-4 40-41 5.964047528687566E-5 5.76524594439798E-4 0.0 0.05085344526127597 1.1928095057375131E-4 42-43 5.964047528687566E-5 5.964047528687565E-4 0.0 0.06196645382306381 1.2922102978823059E-4 44-45 5.964047528687566E-5 6.659853073701115E-4 0.0 0.07513705878224886 1.3916110900270986E-4 46-47 5.964047528687566E-5 7.156857034425079E-4 0.0 0.08861580619708274 1.5904126743166843E-4 48-49 5.964047528687566E-5 7.156857034425079E-4 0.0 0.101209886561828 1.5904126743166843E-4 50-51 5.964047528687566E-5 7.455059410859458E-4 0.0 0.11359522526306917 1.5904126743166843E-4 52-53 5.964047528687566E-5 7.55446020300425E-4 0.0 0.14285881847049614 1.5904126743166843E-4 54-55 5.964047528687566E-5 7.753261787293835E-4 0.0 0.1786629838010505 1.5904126743166843E-4 56-57 5.964047528687566E-5 7.753261787293835E-4 0.0 0.22401956525671946 1.689813466461477E-4 58-59 5.964047528687566E-5 7.753261787293835E-4 0.0 0.2605294762115018 1.8886150507510624E-4 60-61 5.964047528687566E-5 7.753261787293835E-4 0.0 0.2722786498430163 1.9880158428958552E-4 62-63 5.964047528687566E-5 7.753261787293835E-4 0.0 0.28617488058485835 2.1868174271854409E-4 64-65 5.964047528687566E-5 8.150864955873006E-4 0.0 0.29337149793614137 2.2862182193302336E-4 66-67 5.964047528687566E-5 8.250265748017799E-4 0.0 0.2997828490294805 2.3856190114750263E-4 68-69 5.964047528687566E-5 8.64786891659697E-4 0.0 0.3056077354491653 2.3856190114750263E-4 70-71 5.964047528687566E-5 9.045472085176141E-4 0.0 0.31082627703676696 2.3856190114750263E-4 72-73 7.952063371583421E-5 9.144872877320934E-4 0.0 0.31522973212878125 2.9820237643437826E-4 74-75 7.952063371583421E-5 9.443075253755312E-4 0.0 0.31832109676448433 2.9820237643437826E-4 76-77 7.952063371583421E-5 0.001003948000662407 0.0 0.32143234155861633 2.9820237643437826E-4 78-79 7.952063371583421E-5 0.0010337682383058447 0.0 0.3236986796195176 2.9820237643437826E-4 80-81 7.952063371583421E-5 0.0010337682383058447 0.0 0.32453364627353387 3.081424556488576E-4 82-83 7.952063371583421E-5 0.001043708317520324 0.0 0.3254381934820515 3.1808253486333686E-4 84-85 7.952063371583421E-5 0.0010536483967348033 0.0 0.3257860962545583 3.1808253486333686E-4 86-87 7.952063371583421E-5 0.0010735285551637618 0.0 0.325905377205132 3.1808253486333686E-4 88 7.952063371583421E-5 0.0011729293473085546 0.0 0.32593519744277544 3.1808253486333686E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 12580 0.0 57.61831 1 GGTATCA 6020 0.0 50.43433 1 TATACAC 15765 0.0 46.972683 3 TTATACA 15660 0.0 46.871872 2 GTATCAA 10485 0.0 34.167732 1 TACACAT 22515 0.0 33.14954 5 ATACACA 24795 0.0 30.85804 4 ACACATC 24280 0.0 30.035685 6 TCAACGC 12200 0.0 28.845564 4 ATCAACG 12295 0.0 28.62268 3 CACATCT 25935 0.0 28.070776 7 CAACGCA 12555 0.0 27.963516 5 TATCAAC 12895 0.0 27.523243 2 AACGCAG 13080 0.0 26.904882 6 CATCTCC 28045 0.0 26.077778 9 ACGCAGA 14935 0.0 23.591085 7 CGCAGAG 15125 0.0 23.267164 8 GTGGTAT 2790 0.0 20.628437 1 TGGTATC 2615 0.0 19.61665 2 GAGTACT 10020 0.0 19.599709 12-13 >>END_MODULE