##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140138_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6345698 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.51202342122175 32.0 28.0 33.0 18.0 34.0 2 31.06722128913163 33.0 30.0 33.0 27.0 34.0 3 32.34254245947412 33.0 33.0 33.0 30.0 34.0 4 32.44815495474257 33.0 33.0 34.0 31.0 34.0 5 32.92745195248813 33.0 33.0 34.0 32.0 34.0 6 36.74476472091801 38.0 37.0 38.0 34.0 38.0 7 36.970980970099745 38.0 38.0 38.0 35.0 38.0 8 37.16132141806938 38.0 38.0 38.0 36.0 38.0 9 37.2101595443086 38.0 38.0 38.0 36.0 38.0 10-11 37.28044700519943 38.0 38.0 38.0 36.5 38.0 12-13 37.32320589476524 38.0 38.0 38.0 37.0 38.0 14-15 37.32429647613233 38.0 38.0 38.0 37.0 38.0 16-17 37.36347924215744 38.0 38.0 38.0 37.0 38.0 18-19 37.36603656524467 38.0 38.0 38.0 37.0 38.0 20-21 37.383794350934345 38.0 38.0 38.0 37.0 38.0 22-23 37.315397198002145 38.0 38.0 38.0 37.0 38.0 24-25 37.37894263330029 38.0 38.0 38.0 37.0 38.0 26-27 37.34119037679865 38.0 38.0 38.0 37.0 38.0 28-29 37.32343975603931 38.0 38.0 38.0 37.0 38.0 30-31 37.32177546983211 38.0 38.0 38.0 37.0 38.0 32-33 37.30906130699368 38.0 38.0 38.0 37.0 38.0 34-35 37.21680239354703 38.0 38.0 38.0 37.0 38.0 36-37 37.237760708513264 38.0 38.0 38.0 37.0 38.0 38-39 37.19467542942933 38.0 38.0 38.0 37.0 38.0 40-41 37.27606003165903 38.0 38.0 38.0 37.0 38.0 42-43 37.262613471078154 38.0 38.0 38.0 37.0 38.0 44-45 37.228716518866406 38.0 38.0 38.0 37.0 38.0 46-47 37.1959882409959 38.0 38.0 38.0 37.0 38.0 48-49 37.141124787666215 38.0 38.0 38.0 36.5 38.0 50-51 37.10319456076599 38.0 38.0 38.0 36.0 38.0 52-53 37.011574268893895 38.0 38.0 38.0 36.0 38.0 54-55 37.04496246855197 38.0 38.0 38.0 36.0 38.0 56-57 37.011633437677816 38.0 38.0 38.0 36.0 38.0 58-59 36.979046407666054 38.0 38.0 38.0 36.0 38.0 60-61 36.95917414002503 38.0 38.0 38.0 36.0 38.0 62-63 36.97540743945783 38.0 38.0 38.0 36.0 38.0 64-65 36.984002788139506 38.0 38.0 38.0 36.0 38.0 66-67 36.97327628838984 38.0 38.0 38.0 36.0 38.0 68-69 36.9495350741642 38.0 38.0 38.0 36.0 38.0 70-71 36.95924773447394 38.0 38.0 38.0 36.0 38.0 72-73 36.97060057543183 38.0 38.0 38.0 36.0 38.0 74-75 36.927477203872904 38.0 38.0 38.0 36.0 38.0 76-77 36.944086638300405 38.0 38.0 38.0 36.0 38.0 78-79 36.95698552238031 38.0 38.0 38.0 36.0 38.0 80-81 36.94991598738264 38.0 38.0 38.0 36.0 38.0 82-83 36.91339928546654 38.0 38.0 38.0 36.0 38.0 84-85 36.912233668936054 38.0 38.0 38.0 36.0 38.0 86-87 36.917013404117455 38.0 38.0 38.0 36.0 38.0 88-89 36.90439819340972 38.0 38.0 38.0 35.0 38.0 90-91 36.917123381102115 38.0 38.0 38.0 35.5 38.0 92-93 36.90275959069007 38.0 38.0 38.0 35.0 38.0 94-95 36.842758981963584 38.0 38.0 38.0 35.0 38.0 96-97 36.87504210938675 38.0 38.0 38.0 35.0 38.0 98-99 36.90316138965134 38.0 38.0 38.0 35.0 38.0 100 35.488776835811116 38.0 36.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 11.0 19 22.0 20 55.0 21 149.0 22 470.0 23 1275.0 24 3288.0 25 6421.0 26 11663.0 27 19119.0 28 29557.0 29 42043.0 30 56514.0 31 72347.0 32 93024.0 33 123940.0 34 179916.0 35 315519.0 36 883070.0 37 4507295.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.15983710539014 21.949311171127274 14.184081877202475 24.70676984628011 2 14.279891452114049 20.27165027367881 43.437989648010614 22.010468626196534 3 17.587080255001105 27.049758749943663 31.07883482636583 24.2843261686894 4 12.358451347668925 19.205688641344103 37.878654168540635 30.557205842446333 5 13.075110098211418 37.69861093295017 36.24346762168638 12.98281134715204 6 28.84138198823833 38.35234516360533 18.633805138536374 14.172467709619966 7 25.493586363548975 32.99994736591625 22.329489994638887 19.17697627589589 8 23.436807109320362 37.66034879062949 21.638502178956514 17.264341921093628 9 24.530682046324927 17.481244774018556 20.691009877873167 37.29706330178335 10-11 23.725278133311733 27.051318862006983 29.040201724065657 20.183201280615624 12-13 24.923452077297092 24.008083901881243 28.817121457718287 22.251342563103382 14-15 21.96342309388187 25.797091194695998 25.760389164438646 26.479096546983484 16-17 21.914689290287686 29.539185445005415 26.357786015029394 22.188339249677497 18-19 22.145861653044314 27.909151995572433 28.114519474453402 21.83046687692985 20-21 22.59843668718631 27.00485704564734 28.07645328034566 22.320252986820687 22-23 22.172151928657122 27.886957703695387 27.98963818349083 21.951252184156665 24-25 22.670248615299364 27.819569017221298 28.167884653709983 21.342297713769355 26-27 22.71256582711644 27.822034686417823 28.11945267146575 21.34594681499999 28-29 21.94530807374652 27.25788844357031 28.476624138628654 22.320179344054512 30-31 22.111746393170716 27.37727592968212 28.952018234747275 21.558959442399892 32-33 21.07074582192677 26.911599721353674 29.765019127269955 22.252635329449603 34-35 21.22795537731077 27.18051917637031 29.00576347842202 22.585761967896897 36-37 21.56899455986345 27.516329053888843 29.46831853229206 21.446357853955643 38-39 21.597237086723442 27.073487688986265 29.267504102602338 22.061771121687958 40-41 21.830757549393358 26.940473580956812 29.472414905187282 21.756353964462544 42-43 22.4577502507644 26.737500551409525 29.25877642896712 21.545972768858956 44-45 21.603481908173432 27.479553939862267 29.166138000980656 21.750826150983645 46-47 22.581815881689803 26.643799056581024 28.354063865917052 22.42032119581212 48-49 22.20551672784426 26.71557542334977 28.47719021191851 22.601717636887464 50-51 21.580372407543123 26.932191252861614 29.23967863748284 22.24775770211242 52-53 21.859754834005894 27.093650432504074 29.791533628069335 21.2550611054207 54-55 21.747601636237363 27.274618817513556 28.83820211565024 22.139577430598838 56-57 22.52829231717634 28.07820479603485 27.73011325173857 21.663389635050244 58-59 21.333450115543346 29.156983186307308 28.80492987262942 20.704636825519927 60-61 22.059731050641915 30.260127321463848 27.067540872800596 20.61260075509364 62-63 21.177884700180254 31.1408106897318 27.01413115945352 20.667173450634422 64-65 21.224109987215556 30.90126134728527 27.120205677818838 20.754422987680332 66-67 21.477216914658285 30.605499390062977 27.06975474734843 20.847528947930304 68-69 21.59767578944579 29.87702266920435 27.454847574885417 21.07045396646444 70-71 21.84636422213341 28.845706187819438 27.823901430041033 21.48402816000612 72-73 22.1828955456312 28.245397570118445 27.982297835778947 21.58940904847141 74-75 21.962256247716837 28.262587725245712 28.053538277716306 21.721617749321144 76-77 22.09530013073243 28.05539921809947 28.01403325274147 21.835267398426634 78-79 22.068203579728067 28.049829383305198 28.039113873593784 21.84285316337295 80-81 22.135514966835196 27.989969586461168 27.9952285548663 21.879286891837335 82-83 22.130002771539274 27.95072747632112 28.11717051455902 21.802099237580585 84-85 22.25974815051265 27.89735104374178 28.061710486049275 21.781190319696304 86-87 22.02404133399346 27.914563336597105 28.107645863304125 21.953749466105315 88-89 22.131588105741677 27.908938172216775 28.068447368325796 21.891026353715752 90-91 22.190752215511587 27.901391113910357 28.09885977268629 21.80899689789177 92-93 22.204242470095306 27.91460070931848 28.015131873979527 21.86602494660669 94-95 22.102725979472755 28.037656968585186 27.980999502657923 21.878617549284144 96-97 22.14464539024791 28.10287737483733 28.122950013920644 21.629527220994113 98-99 23.19426148118906 30.00881697796997 28.350899562453513 18.446021978387456 100 29.37933407052463 41.00638080026211 29.614285129213254 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1180.0 1 1030.0 2 1112.5 3 1509.5 4 2008.5 5 2874.0 6 3646.5 7 4532.5 8 5723.0 9 6575.5 10 6667.0 11 6748.5 12 7663.5 13 9510.0 14 13220.0 15 17792.5 16 21356.0 17 23308.5 18 23565.0 19 22488.0 20 20721.0 21 19537.5 22 20386.0 23 23770.0 24 30076.0 25 39460.5 26 51839.5 27 65308.0 28 78305.0 29 92463.0 30 106312.5 31 120322.5 32 135858.5 33 151717.5 34 167333.5 35 181657.0 36 197491.0 37 212020.0 38 222294.5 39 231206.5 40 242775.0 41 254059.5 42 260152.0 43 266384.0 44 291824.0 45 337769.5 46 344315.0 47 322526.0 48 301814.5 49 271413.5 50 251827.0 51 238856.0 52 224010.0 53 208855.0 54 192905.0 55 175752.5 56 158773.0 57 141444.5 58 124749.5 59 107257.5 60 89016.0 61 71553.0 62 55690.0 63 42887.5 64 32203.0 65 23650.0 66 17481.5 67 13313.0 68 10075.0 69 7330.5 70 5381.0 71 3898.5 72 2764.0 73 1917.0 74 1301.0 75 877.5 76 564.0 77 346.5 78 231.0 79 165.0 80 103.0 81 62.5 82 46.5 83 31.5 84 18.5 85 10.5 86 7.5 87 6.0 88 2.5 89 1.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.019178347283466686 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 5.122146649107423E-4 26-27 4.255790673103734E-4 28-29 0.0035635429374599793 30-31 0.005816809949349555 32-33 0.004303233009467587 34-35 0.0020547162202868403 36-37 0.0 38-39 8.016809003774393E-6 40-41 4.1160290843457486E-4 42-43 8.123896571748142E-6 44-45 8.185790597162429E-6 46-47 2.559862170414649E-4 48-49 0.0015491975156868743 50-51 0.002795736443154954 52-53 0.0 54-55 0.00284575666582288 56-57 0.03912350972574729 58-59 0.06139423174742391 60-61 0.04220947427588874 62-63 0.014108003823269037 64-65 4.01127900344141E-4 66-67 0.0 68-69 0.0 70-71 0.0031405409905285037 72-73 0.004911081243329075 74-75 0.0041981852258623645 76-77 0.003185642901705673 78-79 0.008028607818742373 80-81 0.016688722816714487 82-83 0.04287567450113349 84-85 0.01974884097215393 86-87 0.0019144083387941746 88-89 0.001354822122197509 90-91 9.408238522680754E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 37.0 20-21 165.0 22-23 413.0 24-25 548.0 26-27 1621.0 28-29 4600.0 30-31 13643.0 32-33 16912.0 34-35 23335.0 36-37 36715.0 38-39 42546.0 40-41 40097.0 42-43 44321.0 44-45 52132.0 46-47 52996.0 48-49 48949.0 50-51 44569.0 52-53 42745.0 54-55 45003.0 56-57 47251.0 58-59 48707.0 60-61 53143.0 62-63 59649.0 64-65 77939.0 66-67 91071.0 68-69 87380.0 70-71 120994.0 72-73 55662.0 74-75 47878.0 76-77 50040.0 78-79 51276.0 80-81 51698.0 82-83 47997.0 84-85 47519.0 86-87 48972.0 88-89 51121.0 90-91 51719.0 92-93 50858.0 94-95 58594.0 96-97 184052.0 98-99 1398706.0 100-101 3052125.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.56363250856973 #Duplication Level Percentage of deduplicated Percentage of total 1 90.95240644286659 79.64123093533239 2 6.62906852167831 11.609306398127341 3 1.4358974090098615 3.7719717912764086 4 0.4918052850124319 1.7225702897040391 5 0.2051380017141462 0.8981314297819922 6 0.10305339990811242 0.5414238022987578 7 0.05793479715968712 0.355108690156456 8 0.035148115021953655 0.24621573017210313 9 0.022349885241042984 0.17613334240698547 >10 0.06527129818735619 0.8293311017906474 >50 0.0012842030182716008 0.07231892280875718 >100 5.909043121493377E-4 0.0993585311305177 >500 5.173687010227669E-5 0.0368990350135668 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.5758707710325958E-5 2 0.0 1.5758707710325958E-5 0.0 0.0 1.5758707710325958E-5 3 0.0 1.5758707710325958E-5 0.0 0.0 1.5758707710325958E-5 4 0.0 1.5758707710325958E-5 0.0 0.0 1.5758707710325958E-5 5 0.0 1.5758707710325958E-5 0.0 0.0 1.5758707710325958E-5 6 0.0 3.1517415420651915E-5 0.0 0.0 1.5758707710325958E-5 7 0.0 4.7276123130977866E-5 0.0 0.0 1.5758707710325958E-5 8 0.0 7.879353855162978E-5 0.0 0.0 1.5758707710325958E-5 9 0.0 1.5758707710325956E-4 0.0 1.5758707710325958E-5 1.5758707710325958E-5 10-11 0.0 1.5758707710325956E-4 0.0 3.1517415420651915E-5 1.5758707710325958E-5 12-13 0.0 1.5758707710325956E-4 0.0 3.1517415420651915E-5 1.5758707710325958E-5 14-15 0.0 1.5758707710325956E-4 0.0 4.727612313097787E-5 3.1517415420651915E-5 16-17 0.0 1.5758707710325956E-4 0.0 7.879353855162978E-5 4.7276123130977866E-5 18-19 0.0 1.5758707710325956E-4 0.0 8.667289240679276E-5 4.7276123130977866E-5 20-21 0.0 1.5758707710325956E-4 0.0 1.103109539722817E-4 6.303483084130383E-5 22-23 0.0 1.8910449252391146E-4 0.0 1.418283693929336E-4 7.879353855162978E-5 24-25 0.0 2.206219079445634E-4 0.0 1.4970772324809657E-4 9.455224626195573E-5 26-27 0.0 2.521393233652153E-4 0.0 1.7334578481358553E-4 9.455224626195573E-5 28-29 0.0 2.521393233652153E-4 0.0 4.176057543236378E-4 9.455224626195573E-5 30-31 0.0 2.994154464961932E-4 0.0 0.001473439170915477 9.455224626195573E-5 32-33 0.0 2.994154464961932E-4 0.0 0.0037190550196369255 9.455224626195573E-5 34-35 0.0 3.62450277337497E-4 0.0 0.006358638561116523 1.103109539722817E-4 36-37 0.0 4.333644620339638E-4 0.0 0.010180125180870568 1.103109539722817E-4 38-39 0.0 4.412438158891268E-4 0.0 0.015908415433574054 1.103109539722817E-4 40-41 0.0 4.885199390201046E-4 0.0 0.021526394732305255 1.103109539722817E-4 42-43 0.0 5.200373544407566E-4 0.0 0.02712861532332613 1.103109539722817E-4 44-45 0.0 6.697450776888532E-4 0.0 0.03299085459156739 1.103109539722817E-4 46-47 0.0 7.879353855162978E-4 0.0 0.03928645832184261 1.103109539722817E-4 48-49 0.0 7.879353855162978E-4 0.0 0.04569237300609011 1.103109539722817E-4 50-51 0.0 8.430908625024386E-4 0.0 0.051712199351434625 1.2606966168260766E-4 52-53 0.0 8.509702163576016E-4 0.0 0.05737745477329681 1.2606966168260766E-4 54-55 0.0 8.509702163576016E-4 0.0 0.06349183336490327 1.3394901553777063E-4 56-57 0.0 8.982463394885795E-4 0.0 0.06962197066422007 1.418283693929336E-4 58-59 0.0 8.982463394885795E-4 0.0 0.07543693380933035 1.418283693929336E-4 60-61 0.0 8.982463394885795E-4 0.0 0.0808736879693928 1.418283693929336E-4 62-63 0.0 9.218844010540684E-4 0.0 0.08611345828307619 1.5758707710325956E-4 64-65 0.0 0.001071592124302165 0.0 0.0912192795812218 1.5758707710325956E-4 66-67 0.0 0.001087350832012491 0.0 0.09608084090985736 1.5758707710325956E-4 68-69 0.0 0.0011188682474331428 0.0 0.1011787828541478 1.5758707710325956E-4 70-71 0.0 0.0011425063089986318 0.0 0.10555182424376325 1.7334578481358553E-4 72-73 0.0 0.0011503856628537947 0.0 0.10945998375592408 1.8910449252391146E-4 74-75 0.0 0.0011661443705641207 0.0 0.11239898274389988 1.8910449252391146E-4 76-77 0.0 0.0012528172629709135 0.0 0.11510160111622078 1.9698384637907443E-4 78-79 0.0 0.0012922140322467284 0.0 0.11703992216459089 2.0486320023423743E-4 80-81 0.0 0.0012922140322467284 0.0 0.11767027047300391 2.0486320023423743E-4 82-83 0.0 0.0013158520938122173 0.0 0.11832425684298245 2.0486320023423743E-4 84-85 0.0 0.0013473695092328692 0.0 0.11854487875092701 2.0486320023423743E-4 86-87 0.0 0.0013552488630880323 0.0 0.11866306905875446 2.0486320023423743E-4 88 0.0 0.0014025249862190101 0.0 0.11867882776646478 2.0486320023423743E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 12705 0.0 62.880943 1 TATACAC 16705 0.0 49.65726 3 GGTATCA 7900 0.0 48.85666 1 TTATACA 16660 0.0 48.48445 2 GTATCAA 14085 0.0 35.569717 1 TACACAT 24795 0.0 33.744164 5 ATACACA 27690 0.0 31.068216 4 ACACATC 26370 0.0 30.881989 6 TCAACGC 16385 0.0 29.92885 4 ACATCTC 27640 0.0 29.615444 8 ATCAACG 16605 0.0 29.583067 3 CAACGCA 16910 0.0 28.999659 5 TATCAAC 17155 0.0 28.811287 2 CACATCT 28655 0.0 28.331192 7 AACGCAG 17540 0.0 28.054129 6 CATCTCC 30580 0.0 26.56153 9 ACGCAGA 20050 0.0 24.479078 7 CGCAGAG 20460 0.0 23.98854 8 GTGGTAT 4025 0.0 21.774733 1 TGGTATC 3750 0.0 21.236645 2 >>END_MODULE