##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140136_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6330092 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.542547406893927 32.0 28.0 33.0 18.0 34.0 2 31.0426872152885 33.0 30.0 33.0 27.0 34.0 3 32.335305079294265 33.0 33.0 33.0 30.0 34.0 4 32.42659048241321 33.0 33.0 34.0 31.0 34.0 5 32.91123035810538 33.0 33.0 34.0 32.0 34.0 6 36.72476576959703 38.0 37.0 38.0 34.0 38.0 7 36.93300839861411 38.0 38.0 38.0 35.0 38.0 8 37.140465099085446 38.0 38.0 38.0 36.0 38.0 9 37.189976227833654 38.0 38.0 38.0 36.0 38.0 10-11 37.26727778995945 38.0 38.0 38.0 36.5 38.0 12-13 37.312585425298714 38.0 38.0 38.0 36.5 38.0 14-15 37.315649835736984 38.0 38.0 38.0 37.0 38.0 16-17 37.3610791912661 38.0 38.0 38.0 37.0 38.0 18-19 37.36385205775841 38.0 38.0 38.0 37.0 38.0 20-21 37.38402465799844 38.0 38.0 38.0 37.0 38.0 22-23 37.31949786514555 38.0 38.0 38.0 37.0 38.0 24-25 37.386768633806554 38.0 38.0 38.0 37.0 38.0 26-27 37.35048732138041 38.0 38.0 38.0 37.0 38.0 28-29 37.32282558209552 38.0 38.0 38.0 37.0 38.0 30-31 37.32418315975494 38.0 38.0 38.0 37.0 38.0 32-33 37.29159992844585 38.0 38.0 38.0 37.0 38.0 34-35 37.18308729393198 38.0 38.0 38.0 36.5 38.0 36-37 37.205442411398884 38.0 38.0 38.0 36.5 38.0 38-39 37.16448608182306 38.0 38.0 38.0 36.0 38.0 40-41 37.26003127659863 38.0 38.0 38.0 37.0 38.0 42-43 37.2475671972295 38.0 38.0 38.0 37.0 38.0 44-45 37.209772253273286 38.0 38.0 38.0 37.0 38.0 46-47 37.1756790087292 38.0 38.0 38.0 37.0 38.0 48-49 37.11840230610788 38.0 38.0 38.0 36.5 38.0 50-51 37.08303555619139 38.0 38.0 38.0 36.0 38.0 52-53 36.99306963619193 38.0 38.0 38.0 36.0 38.0 54-55 37.029310724373346 38.0 38.0 38.0 36.0 38.0 56-57 36.99893618860969 38.0 38.0 38.0 36.0 38.0 58-59 36.96827095752418 38.0 38.0 38.0 36.0 38.0 60-61 36.95576997464469 38.0 38.0 38.0 36.0 38.0 62-63 36.969593610681386 38.0 38.0 38.0 36.0 38.0 64-65 36.98013854647647 38.0 38.0 38.0 36.0 38.0 66-67 36.96808975944055 38.0 38.0 38.0 36.0 38.0 68-69 36.94505596267622 38.0 38.0 38.0 36.0 38.0 70-71 36.95089432359889 38.0 38.0 38.0 36.0 38.0 72-73 36.96213207813787 38.0 38.0 38.0 36.0 38.0 74-75 36.91939571154458 38.0 38.0 38.0 36.0 38.0 76-77 36.93973642981001 38.0 38.0 38.0 36.0 38.0 78-79 36.957153866114496 38.0 38.0 38.0 36.0 38.0 80-81 36.95038116673102 38.0 38.0 38.0 36.0 38.0 82-83 36.91649482825042 38.0 38.0 38.0 36.0 38.0 84-85 36.918984656492086 38.0 38.0 38.0 36.0 38.0 86-87 36.92155285005306 38.0 38.0 38.0 36.0 38.0 88-89 36.914287913851894 38.0 38.0 38.0 35.5 38.0 90-91 36.92814404111087 38.0 38.0 38.0 36.0 38.0 92-93 36.91221852208393 38.0 38.0 38.0 35.0 38.0 94-95 36.858375635589226 38.0 38.0 38.0 35.0 38.0 96-97 36.89406386248381 38.0 38.0 38.0 35.0 38.0 98-99 36.92340786300173 38.0 38.0 38.0 35.0 38.0 100 35.48571009167454 38.0 36.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 10.0 19 35.0 20 60.0 21 163.0 22 538.0 23 1369.0 24 3202.0 25 6700.0 26 11616.0 27 19186.0 28 29815.0 29 42927.0 30 57897.0 31 73923.0 32 94352.0 33 124380.0 34 181861.0 35 320754.0 36 889763.0 37 4471540.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.32309356641262 22.08699336439344 14.268844749807744 24.321068319386196 2 14.167590202337262 20.419097169224916 43.39287254828535 22.02044008015247 3 17.440947145791878 27.417279243334853 31.17368594326907 23.9680876676042 4 12.186647524238195 19.245249516120776 38.0650233835464 30.503079576094628 5 12.862103741936137 37.92832710804203 36.15713642076608 13.052432729255752 6 28.420503209116077 38.33580933736825 18.948602958693176 14.295084494822508 7 25.27291862424748 33.3191049987899 22.432249009966995 18.975727366995613 8 23.498141891144712 37.30318611483056 21.83736034168224 17.361311652342494 9 24.472487919606856 17.43666600738188 20.790424530954684 37.300421542056576 10-11 23.545668846519135 26.99295681642542 29.13206474724222 20.32930958981323 12-13 24.89371402500943 24.150359899982497 28.904990638366712 22.050935436641364 14-15 21.95024179743359 25.881717042975044 26.010704109829685 26.157337049761676 16-17 21.674092572430226 29.58417507991985 26.580221898828643 22.161510448821282 18-19 21.80413807571833 27.977215812977125 28.50601539440501 21.712630716899533 20-21 22.47327439676191 27.017758459266872 28.42216038466196 22.086806759309262 22-23 22.04345611926297 27.928956167013215 28.30760889287286 21.719978820850955 24-25 22.311618763530706 28.186295517590466 28.424961321083003 21.077124397795824 26-27 22.410019361107164 28.2195918982623 28.38354427559548 20.986844465035055 28-29 21.75248522962371 28.109311217392623 28.512097987789147 21.62610556519452 30-31 23.048815098342835 27.738393627228707 28.491307429754354 20.721483844674104 32-33 21.079057297188957 28.665934125354315 28.84839288739861 21.406615690058118 34-35 21.725318050540825 28.282711521179305 29.285986632432603 20.705983795847267 36-37 21.328659998531435 28.215087267863016 29.111582186948294 21.34467054665726 38-39 21.377733089649965 27.0417980981395 29.6721319897355 21.90833682247504 40-41 21.668567593249215 26.926814892083435 29.82964207806418 21.574975436603168 42-43 22.217204893104604 26.691661529640736 29.671174511939174 21.41995906531549 44-45 21.455069949285193 27.34287557762809 29.50907816527743 21.692976307809285 46-47 22.313379821313635 26.554816785394735 28.79910474282624 22.332698650465392 48-49 21.985445673873592 26.661538670385966 28.888810788180415 22.46420486756003 50-51 21.409628995178 26.972829860717727 29.511215443156914 22.106325700947362 52-53 21.660829015736724 27.120059527643015 30.013470461925788 21.205640994694473 54-55 21.641924623549706 27.323037613324487 29.046876323262744 21.98816143986307 56-57 22.285646287440077 28.18668678605029 28.02812138000806 21.499545546501565 58-59 21.10752784155467 29.290296386099087 28.964549850464522 20.637625921881725 60-61 21.776494301241485 30.35149198332566 27.346906129685888 20.52510758574697 62-63 20.979617424440868 31.085736775582994 27.309437512409207 20.62520828756693 64-65 21.00881225954764 30.87623459242799 27.427682866154335 20.687270281870035 66-67 21.26042497682335 30.47379675552222 27.44208005125407 20.823698216400363 68-69 21.436181979601045 29.705600158158774 27.83515402106922 21.023063841170963 70-71 21.71607960724199 28.756169598688313 28.185721531876023 21.342029262193673 72-73 21.98022088040429 28.176317660222377 28.329562509074336 21.513898950299 74-75 21.81202630692679 28.2113771134665 28.320236946757916 21.656359632848794 76-77 21.92981467581626 28.088673247188485 28.274747440204735 21.70676463679052 78-79 21.913502693223148 28.105791732252833 28.282929569803482 21.697776004720538 80-81 21.984876993620787 28.009418698848936 28.246224278702453 21.759480028827817 82-83 21.995924069777875 27.953787699150208 28.33986152411592 21.710426706956 84-85 22.133735062612548 27.951391889074532 28.234013166557876 21.68085988175504 86-87 21.94701103785372 27.96423599087555 28.2726319056474 21.816121065623328 88-89 22.016067692497966 27.947880486874787 28.233244354664166 21.80280746596308 90-91 22.06123056358952 27.957117903584532 28.26563665328124 21.71601487954471 92-93 22.085067976544615 27.964500775314217 28.23087756476194 21.719553683379228 94-95 21.939424475922948 28.08086368187828 28.215093197860497 21.764618644338274 96-97 22.066429139866752 28.15176592583053 28.282373974415126 21.49943095988759 98-99 23.103634160069426 30.031868207196506 28.545851000976004 18.318646631758064 100 22.01826606173205 30.95700118711698 22.479441828809275 24.545290922341696 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1084.0 1 964.5 2 1251.0 3 1837.5 4 2419.5 5 3374.0 6 4227.0 7 5308.0 8 6625.0 9 7553.0 10 7745.5 11 7759.0 12 8732.5 13 11120.0 14 15633.0 15 20745.0 16 24580.0 17 26708.0 18 26695.0 19 25101.0 20 22838.5 21 20984.5 22 21245.5 23 24308.5 24 30367.5 25 39445.0 26 51898.0 27 65659.0 28 78514.5 29 92947.5 30 107708.5 31 121504.0 32 137034.5 33 152773.0 34 168312.0 35 184315.0 36 201953.0 37 217218.0 38 225851.0 39 232994.0 40 242770.0 41 250789.0 42 258857.5 43 289902.5 44 336678.0 45 355632.5 46 332653.5 47 296908.5 48 268310.0 49 250630.0 50 241811.5 51 231595.5 52 218882.0 53 204821.5 54 190710.0 55 174994.0 56 157923.5 57 140333.0 58 122512.0 59 105813.0 60 88365.0 61 70937.0 62 55254.0 63 42000.0 64 31405.0 65 22959.0 66 16610.0 67 12329.0 68 9212.5 69 6565.0 70 4596.0 71 3282.0 72 2317.5 73 1529.5 74 969.0 75 615.0 76 396.5 77 261.5 78 172.0 79 104.5 80 68.0 81 44.5 82 30.5 83 20.5 84 13.5 85 10.5 86 8.5 87 6.5 88 5.0 89 4.0 90 3.5 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.01823038274957141 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.949835509100223E-4 26-27 2.923197874187302E-4 28-29 0.0033747526926693337 30-31 0.005340370702425683 32-33 0.003599413216363503 34-35 0.001852332233355384 36-37 0.0 38-39 1.6054330422843772E-5 40-41 3.635417987030283E-4 42-43 0.0 44-45 8.190110817932445E-6 46-47 2.477825731047379E-4 48-49 0.0012991939584149667 50-51 0.002475642821638662 52-53 0.0 54-55 0.0029533820139205575 56-57 0.037898224014952776 58-59 0.06037281770935986 60-61 0.0412126906141432 62-63 0.013152578983921897 64-65 3.55952545474495E-4 66-67 0.0 68-69 0.0 70-71 0.002882338452416335 72-73 0.0051952786070628715 74-75 0.004080874069327313 76-77 0.003069891918431806 78-79 0.007240404281413912 80-81 0.015242202864998975 82-83 0.042199464939611527 84-85 0.019207603988310947 86-87 0.0018670525922188797 88-89 0.0012367538509423033 90-91 1.353744326639762E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 47.0 20-21 156.0 22-23 425.0 24-25 531.0 26-27 1632.0 28-29 4606.0 30-31 12469.0 32-33 16066.0 34-35 21745.0 36-37 33701.0 38-39 39747.0 40-41 39207.0 42-43 42483.0 44-45 50457.0 46-47 51053.0 48-49 46906.0 50-51 42929.0 52-53 40700.0 54-55 43673.0 56-57 46039.0 58-59 46737.0 60-61 54882.0 62-63 58904.0 64-65 78333.0 66-67 91503.0 68-69 87548.0 70-71 118274.0 72-73 52607.0 74-75 47752.0 76-77 49870.0 78-79 51238.0 80-81 50582.0 82-83 47212.0 84-85 47062.0 86-87 49296.0 88-89 49531.0 90-91 50712.0 92-93 50184.0 94-95 58660.0 96-97 183550.0 98-99 404087.0 100-101 4066996.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.92690912096126 #Duplication Level Percentage of deduplicated Percentage of total 1 90.40697883319474 78.58799232933787 2 7.002266730417604 12.173708074314831 3 1.5553549783918632 4.056066025725124 4 0.5185320910139877 1.8029756780749966 5 0.23016369708479895 1.0003709389717386 6 0.10366908524189836 0.5406979890885409 7 0.06225509888766087 0.3788150326326907 8 0.03389554388451745 0.23571478902840015 9 0.02059458957181874 0.16112016144836852 >10 0.06411521751800366 0.8192987496652374 >50 0.001351247362501262 0.07942140343862514 >100 7.697108875652276E-4 0.12829512932195683 >500 5.317654298894456E-5 0.03552369895155073 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 4.7392676125402285E-5 0.0 3 0.0 0.0 0.0 4.7392676125402285E-5 0.0 4 0.0 1.5797558708467428E-5 0.0 4.7392676125402285E-5 0.0 5 0.0 1.5797558708467428E-5 0.0 6.319023483386971E-5 0.0 6 0.0 1.5797558708467428E-5 0.0 6.319023483386971E-5 1.5797558708467428E-5 7 0.0 1.5797558708467428E-5 0.0 6.319023483386971E-5 1.5797558708467428E-5 8 0.0 1.5797558708467428E-5 0.0 6.319023483386971E-5 1.5797558708467428E-5 9 4.7392676125402285E-5 4.7392676125402285E-5 0.0 6.319023483386971E-5 1.5797558708467428E-5 10-11 5.5291455479636E-5 4.7392676125402285E-5 0.0 1.2638046966773943E-4 1.5797558708467428E-5 12-13 6.319023483386971E-5 4.7392676125402285E-5 0.0 1.2638046966773943E-4 1.5797558708467428E-5 14-15 6.319023483386971E-5 7.898779354233714E-5 0.0 1.2638046966773943E-4 3.1595117416934856E-5 16-17 6.319023483386971E-5 8.688657289657086E-5 0.0 1.7377314579314172E-4 6.319023483386971E-5 18-19 9.478535225080457E-5 1.1848169031350572E-4 0.0 1.8957070450160914E-4 6.319023483386971E-5 20-21 1.4217802837620684E-4 1.4217802837620687E-4 0.0 1.9746948385584285E-4 6.319023483386971E-5 22-23 1.5797558708467428E-4 1.4217802837620687E-4 0.0 2.0536826321007658E-4 8.688657289657086E-5 24-25 1.5797558708467428E-4 1.5797558708467428E-4 0.0 2.7645727739818E-4 1.3427924902197313E-4 26-27 1.5797558708467428E-4 1.5797558708467428E-4 0.0 3.3964751223204974E-4 1.5797558708467428E-4 28-29 1.5797558708467428E-4 1.5797558708467428E-4 0.0 6.713962451098657E-4 1.5797558708467428E-4 30-31 1.5797558708467428E-4 1.8957070450160914E-4 0.0 0.00193520094178726 1.5797558708467428E-4 32-33 1.5797558708467428E-4 1.8957070450160914E-4 0.0 0.00476296395060293 1.8957070450160914E-4 34-35 1.5797558708467428E-4 1.8957070450160914E-4 0.0 0.00820683174904883 2.21165821918544E-4 36-37 1.7377314579314172E-4 1.8957070450160914E-4 0.0 0.013625394386053157 2.21165821918544E-4 38-39 1.7377314579314172E-4 1.8957070450160914E-4 0.0 0.021437287167390302 2.21165821918544E-4 40-41 1.8167192514737543E-4 2.0536826321007658E-4 0.0 0.02941505431516635 2.21165821918544E-4 42-43 1.8957070450160914E-4 2.2906460127277773E-4 0.0 0.037005781274584953 2.21165821918544E-4 44-45 1.8957070450160914E-4 2.843560567524137E-4 0.0 0.045117827671382976 2.2906460127277773E-4 46-47 1.8957070450160914E-4 3.1595117416934856E-4 0.0 0.05422512026681445 2.3696338062701144E-4 48-49 1.9746948385584285E-4 3.1595117416934856E-4 0.0 0.06322972873064088 2.3696338062701144E-4 50-51 2.0536826321007658E-4 3.4754629158628345E-4 0.0 0.07206056404867417 2.3696338062701144E-4 52-53 2.0536826321007658E-4 3.4754629158628345E-4 0.0 0.08063073964801776 2.4486215998124514E-4 54-55 2.2116582191854402E-4 3.5544507094051716E-4 0.0 0.08837154341516679 2.6855849804394627E-4 56-57 2.3696338062701144E-4 3.6334385029475086E-4 0.0 0.09398757553602696 2.8435605675241374E-4 58-59 2.3696338062701144E-4 3.6334385029475086E-4 0.0 0.09957991131882443 2.8435605675241374E-4 60-61 2.3696338062701144E-4 3.6334385029475086E-4 0.0 0.10513275320485074 2.8435605675241374E-4 62-63 2.3696338062701144E-4 3.7124262964898457E-4 0.0 0.11039334025477039 3.0015361546088115E-4 64-65 2.3696338062701144E-4 4.1073652642015316E-4 0.0 0.11540116636535457 3.0015361546088115E-4 66-67 2.3696338062701144E-4 4.1073652642015316E-4 0.0 0.12003774984628976 3.0805239481511486E-4 68-69 2.3696338062701144E-4 4.42331643837088E-4 0.0 0.1244531675053064 3.3964751223204974E-4 70-71 2.3696338062701144E-4 4.42331643837088E-4 0.0 0.12837886084436056 3.6334385029475086E-4 72-73 2.3696338062701144E-4 4.42331643837088E-4 0.0 0.13205179324407923 3.949389677116857E-4 74-75 2.3696338062701144E-4 4.42331643837088E-4 0.0 0.1349269489290203 3.949389677116857E-4 76-77 2.3696338062701144E-4 4.42331643837088E-4 0.0 0.13739926686689546 4.107365264201531E-4 78-79 2.3696338062701144E-4 4.42331643837088E-4 0.0 0.13904221297257607 4.265340851286206E-4 80-81 2.3696338062701144E-4 4.42331643837088E-4 0.0 0.13981629334929097 4.5812920254555546E-4 82-83 2.3696338062701144E-4 4.42331643837088E-4 0.0 0.14032971400731617 4.739267612540229E-4 84-85 2.3696338062701144E-4 4.42331643837088E-4 0.0 0.14056667738794318 4.739267612540229E-4 86-87 2.3696338062701144E-4 4.739267612540229E-4 0.0 0.1407325517543821 4.739267612540229E-4 88 2.3696338062701144E-4 5.055218786709577E-4 0.0 0.14075624809244477 4.739267612540229E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 12130 0.0 61.14225 1 GGTATCA 8615 0.0 50.85729 1 TATACAC 15700 0.0 49.167725 3 TTATACA 15745 0.0 47.910778 2 GTATCAA 16105 0.0 39.00689 1 TCAACGC 19445 0.0 31.971924 4 ATCAACG 19595 0.0 31.727177 3 TACACAT 24725 0.0 31.374807 5 CAACGCA 19850 0.0 31.3196 5 TATCAAC 20265 0.0 30.915997 2 AACGCAG 20485 0.0 30.390066 6 ATACACA 27085 0.0 29.453535 4 ACACATC 26900 0.0 28.082829 6 ACATCTC 28115 0.0 27.004696 8 ACGCAGA 23560 0.0 26.387693 7 CACATCT 28980 0.0 25.979603 7 CGCAGAG 23980 0.0 25.907875 8 CATCTCC 30785 0.0 24.428858 9 TGGTATC 3855 0.0 23.938683 2 GTGGTAT 4155 0.0 23.738485 1 >>END_MODULE