##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140135_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5885589 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.743098269349083 33.0 28.0 33.0 18.0 34.0 2 31.102091906179652 33.0 30.0 33.0 27.0 34.0 3 32.34789874046591 33.0 33.0 33.0 30.0 34.0 4 32.424884748153495 33.0 33.0 34.0 31.0 34.0 5 32.89711564976759 33.0 33.0 34.0 32.0 34.0 6 36.70217492250988 38.0 37.0 38.0 34.0 38.0 7 36.90579855304202 38.0 38.0 38.0 35.0 38.0 8 37.12385370436162 38.0 38.0 38.0 36.0 38.0 9 37.17101398007914 38.0 38.0 38.0 36.0 38.0 10-11 37.25104055006219 38.0 38.0 38.0 36.0 38.0 12-13 37.29794978888265 38.0 38.0 38.0 36.5 38.0 14-15 37.301560132724184 38.0 38.0 38.0 36.5 38.0 16-17 37.34456288062248 38.0 38.0 38.0 37.0 38.0 18-19 37.34797638774981 38.0 38.0 38.0 37.0 38.0 20-21 37.371022165168895 38.0 38.0 38.0 37.0 38.0 22-23 37.30401064707614 38.0 38.0 38.0 37.0 38.0 24-25 37.374247919648084 38.0 38.0 38.0 37.0 38.0 26-27 37.33677167525521 38.0 38.0 38.0 37.0 38.0 28-29 37.29174611405368 38.0 38.0 38.0 37.0 38.0 30-31 37.30753850188054 38.0 38.0 38.0 37.0 38.0 32-33 37.28592426670594 38.0 38.0 38.0 37.0 38.0 34-35 37.185379447145735 38.0 38.0 38.0 36.5 38.0 36-37 37.207551936212354 38.0 38.0 38.0 37.0 38.0 38-39 37.15948944309398 38.0 38.0 38.0 36.0 38.0 40-41 37.263987471647624 38.0 38.0 38.0 37.0 38.0 42-43 37.25783591091508 38.0 38.0 38.0 37.0 38.0 44-45 37.22518943088327 38.0 38.0 38.0 37.0 38.0 46-47 37.20099716777619 38.0 38.0 38.0 37.0 38.0 48-49 37.147912223769794 38.0 38.0 38.0 36.5 38.0 50-51 37.109843623079186 38.0 38.0 38.0 36.0 38.0 52-53 37.01417903030803 38.0 38.0 38.0 36.0 38.0 54-55 37.05311990162329 38.0 38.0 38.0 36.0 38.0 56-57 37.01867530417074 38.0 38.0 38.0 36.0 38.0 58-59 36.98987176674221 38.0 38.0 38.0 36.0 38.0 60-61 36.97488887501885 38.0 38.0 38.0 36.0 38.0 62-63 36.985855035244725 38.0 38.0 38.0 36.0 38.0 64-65 36.99287300151274 38.0 38.0 38.0 36.0 38.0 66-67 36.98143549557511 38.0 38.0 38.0 36.0 38.0 68-69 36.96356026615487 38.0 38.0 38.0 36.0 38.0 70-71 36.965183136512934 38.0 38.0 38.0 36.0 38.0 72-73 36.98011778332043 38.0 38.0 38.0 36.0 38.0 74-75 36.938201420425706 38.0 38.0 38.0 36.0 38.0 76-77 36.95519945069165 38.0 38.0 38.0 36.0 38.0 78-79 36.96991867738739 38.0 38.0 38.0 36.0 38.0 80-81 36.962469667878295 38.0 38.0 38.0 36.0 38.0 82-83 36.92729981330139 38.0 38.0 38.0 36.0 38.0 84-85 36.92777159857349 38.0 38.0 38.0 36.0 38.0 86-87 36.930229121739515 38.0 38.0 38.0 36.0 38.0 88-89 36.92024904877919 38.0 38.0 38.0 35.5 38.0 90-91 36.93317281706107 38.0 38.0 38.0 36.0 38.0 92-93 36.915175242423715 38.0 38.0 38.0 35.0 38.0 94-95 36.85597385496372 38.0 38.0 38.0 35.0 38.0 96-97 36.89472800969045 38.0 38.0 38.0 35.0 38.0 98-99 36.919661661804476 38.0 38.0 38.0 35.0 38.0 100 35.48750051896613 38.0 36.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 18.0 19 28.0 20 62.0 21 155.0 22 457.0 23 1248.0 24 3089.0 25 6115.0 26 10936.0 27 17850.0 28 27387.0 29 39202.0 30 52479.0 31 67726.0 32 86850.0 33 115016.0 34 169186.0 35 297093.0 36 830191.0 37 4160498.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.35764118085717 21.62211802421134 14.388296566409922 24.63194422852156 2 14.330820740345981 20.337524462604417 42.97351411132856 22.358140685721047 3 17.676735497500758 26.76321775101863 31.12371591016634 24.43633084131427 4 12.458175383976013 18.936490468498565 37.4910480497364 31.114286097789023 5 13.27314904251724 37.51955836535647 35.864023124958265 13.343269467168026 6 29.314160400938633 37.97106797637416 18.46669891492593 14.248072707761281 7 25.876764415592053 33.121612807146406 21.94140637411141 19.060216403150136 8 24.11050109003534 37.2977623819808 21.267370181641972 17.324366346341886 9 24.683137065805987 17.506489155121095 20.405434358396416 37.404939420676506 10-11 23.849669081548168 26.915785319022444 28.636156891009552 20.598388708419836 12-13 24.991763780991164 24.01878554550785 28.49012222905813 22.49932844444286 14-15 22.237961230388326 25.873782556002467 25.493693154584868 26.39456305902434 16-17 22.197897270774426 29.56065229835111 26.10338574440043 22.138064686474028 18-19 22.22414782955453 27.881712433538937 27.796317411902187 22.097822325004344 20-21 22.75078924705733 26.8779220576213 27.971199459282616 22.400089236038752 22-23 22.22548175032411 27.76129889504546 27.80503490895127 22.20818444567916 24-25 22.470365401269845 27.941490460351275 28.00952065940439 21.57862347897449 26-27 22.405370869850945 28.057346538503307 28.185578443920146 21.351704147725602 28-29 21.38489973531766 27.245679222551207 28.757531613843113 22.61188942828802 30-31 22.495263485026623 26.836629207975726 29.188250175130214 21.479857131867437 32-33 21.7576527836475 27.962246278708918 28.5548353845246 21.72526555311898 34-35 21.615893566350323 28.013135763901687 29.378647107294075 20.99232356245392 36-37 22.498933979530175 27.436589702864662 28.388174474177408 21.676301843427755 38-39 21.95217276042427 26.94049357407281 28.909470546430487 22.197863119072437 40-41 21.980983791568466 26.823606041260494 29.214782637332597 21.98062752983844 42-43 22.468635507416483 26.619602988189488 29.25971535348687 21.652046150907154 44-45 21.735856380842243 27.270957193044627 29.075311254422008 21.917875171691126 46-47 22.68867239719 26.541232108393643 28.143765958098598 22.62632953631776 48-49 22.297087909461542 26.606556898668245 28.52798919255875 22.568365999311464 50-51 21.81256519514215 27.12280253026146 28.904633226988853 22.15999904760754 52-53 21.974319092653353 27.4770994879713 29.25372781871232 21.29485360066303 54-55 21.80093122253299 27.709298478964172 28.36295051701609 22.126819781486745 56-57 22.47760632042222 28.496286866271497 27.404944182216273 21.621162631090012 58-59 21.383805614191342 29.474881079495564 28.37295180843305 20.768361497880047 60-61 22.138612913400017 30.324871962392237 26.814435583190654 20.72207954101709 62-63 21.405594895644786 30.893155812011535 26.84548508143674 20.855764210906937 64-65 21.44281191016112 30.6488587727703 26.950426172093266 20.95790314497532 66-67 21.713056629425825 30.380258765802022 26.878444547446012 21.028240057326148 68-69 21.855350500501604 29.664861232941313 27.244585504224688 21.235202762332396 70-71 22.054026490223606 28.733123896484038 27.59428837154223 21.618561241750125 72-73 22.33717081749327 28.27691375883341 27.696991963778334 21.688923459894983 74-75 22.162633235858884 28.234305356687056 27.766043113690426 21.837018293763634 76-77 22.238903528545347 27.991009221469298 27.800044467238514 21.970042782746837 78-79 22.243418124088514 28.026918385255446 27.770254515688524 21.95940897496752 80-81 22.306310475048562 27.98547384486772 27.74852691101047 21.95968876907325 82-83 22.270704012340133 27.87371724640889 27.89993163382461 21.955647107426365 84-85 22.420692284216436 27.829734270686146 27.817570260733383 21.932003184364035 86-87 22.222143042501713 27.86810173941157 27.88456868497845 22.02518653310826 88-89 22.324708517880453 27.837233067108624 27.839669028183295 21.99838938682763 90-91 22.38788050627835 27.832531193707517 27.871693614701528 21.907894685312606 92-93 22.377907949185126 27.82308093080611 27.811455297460714 21.987555822548053 94-95 22.20813088065486 27.95037098857881 27.79200631080726 22.049491819959073 96-97 22.296867354064396 28.04817240552635 27.89160686329655 21.76335337711271 98-99 23.389219617910445 29.929383582535067 28.116567214042483 18.564829585512005 100 22.348175632418073 30.830025833274494 22.066281164081357 24.755517370226073 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 971.0 1 860.0 2 931.0 3 1240.0 4 1683.5 5 2408.0 6 3021.5 7 3713.5 8 4550.5 9 5117.0 10 5280.5 11 5561.0 12 6528.0 13 8298.0 14 11601.5 15 15438.5 16 18412.0 17 20221.0 18 20277.5 19 18944.5 20 17328.0 21 16164.0 22 16643.5 23 19321.5 24 24135.5 25 31537.0 26 42139.5 27 54303.5 28 65505.0 29 77584.5 30 89996.5 31 102416.5 32 117148.0 33 132542.5 34 147589.5 35 162276.0 36 178425.0 37 192176.0 38 201511.0 39 211262.5 40 222696.0 41 233195.0 42 244518.0 43 273453.0 44 314855.5 45 333861.5 46 322270.0 47 298173.0 48 268185.5 49 246259.0 50 237268.0 51 226899.0 52 214209.0 53 200414.5 54 185907.5 55 170379.5 56 153638.5 57 136637.5 58 119858.0 59 103744.0 60 86409.5 61 69215.5 62 53944.0 63 41248.5 64 31116.0 65 22812.5 66 16546.5 67 12469.5 68 9446.5 69 6772.0 70 4908.0 71 3510.0 72 2431.5 73 1632.5 74 1071.5 75 684.5 76 433.0 77 267.5 78 186.0 79 134.5 80 94.5 81 60.5 82 38.0 83 23.5 84 18.5 85 18.0 86 13.0 87 8.5 88 4.5 89 2.0 90 1.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0186387462665164 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 6.37221483234108E-4 26-27 5.183291820264173E-4 28-29 0.0040291092090051096 30-31 0.006475484165824471 32-33 0.00480072022741259 34-35 0.0021289970423186474 36-37 0.0 38-39 8.635257185160034E-6 40-41 4.692205646860953E-4 42-43 0.0 44-45 0.0 46-47 3.7293695935795173E-4 48-49 0.001584354951364331 50-51 0.003147485866751321 52-53 0.0 54-55 0.003018073044501304 56-57 0.04082650541517976 58-59 0.06441471892586761 60-61 0.04431478301941585 62-63 0.01459254010741135 64-65 3.4562158890692946E-4 66-67 0.0 68-69 0.0 70-71 0.002859720057573012 72-73 0.005359585120971883 74-75 0.004624675031224316 76-77 0.003268621587814913 78-79 0.008140700836309382 80-81 0.017200300211803327 82-83 0.04468222857401626 84-85 0.02057683547815625 86-87 0.002159732500137039 88-89 0.001372977391159155 90-91 1.4546020924786776E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 42.0 20-21 158.0 22-23 386.0 24-25 487.0 26-27 1504.0 28-29 4138.0 30-31 11904.0 32-33 14754.0 34-35 20451.0 36-37 32234.0 38-39 36694.0 40-41 34962.0 42-43 38917.0 44-45 46162.0 46-47 45880.0 48-49 42833.0 50-51 39780.0 52-53 37432.0 54-55 40637.0 56-57 43629.0 58-59 46760.0 60-61 64173.0 62-63 58901.0 64-65 69042.0 66-67 79749.0 68-69 77754.0 70-71 104231.0 72-73 48395.0 74-75 44269.0 76-77 46072.0 78-79 46696.0 80-81 47057.0 82-83 44191.0 84-85 43366.0 86-87 44777.0 88-89 46551.0 90-91 47823.0 92-93 46748.0 94-95 54691.0 96-97 171433.0 98-99 378369.0 100-101 3781557.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.43556686761285 #Duplication Level Percentage of deduplicated Percentage of total 1 91.44202620554711 80.86727423010667 2 6.392514068528038 11.306512107189343 3 1.3098840452864309 3.475210142272421 4 0.4369254153525495 1.545589871422796 5 0.17860281773593145 0.789742071531502 6 0.0856242772309605 0.4543338896729777 7 0.049961095505346574 0.30928364616395876 8 0.027755803334618197 0.19636801614103513 9 0.01714192650497908 0.13643603889037043 >10 0.05805828545488156 0.7557032777374647 >50 0.0010120306598338743 0.059773540035203146 >100 4.4089226209559655E-4 0.06911682636937916 >500 5.31365972092098E-5 0.03465634246673232 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.6990652932102464E-5 2 0.0 1.6990652932102464E-5 0.0 0.0 1.6990652932102464E-5 3 0.0 1.6990652932102464E-5 0.0 0.0 1.6990652932102464E-5 4 0.0 3.398130586420493E-5 0.0 0.0 1.6990652932102464E-5 5 0.0 3.398130586420493E-5 0.0 0.0 1.6990652932102464E-5 6 3.398130586420493E-5 3.398130586420493E-5 0.0 1.6990652932102464E-5 1.6990652932102464E-5 7 3.398130586420493E-5 3.398130586420493E-5 0.0 1.6990652932102464E-5 3.398130586420493E-5 8 3.398130586420493E-5 3.398130586420493E-5 0.0 1.6990652932102464E-5 3.398130586420493E-5 9 3.398130586420493E-5 6.796261172840985E-5 0.0 5.097195879630739E-5 5.097195879630739E-5 10-11 4.2476632330256154E-5 6.796261172840985E-5 0.0 9.344859112656354E-5 5.097195879630739E-5 12-13 5.097195879630739E-5 6.796261172840985E-5 0.0 1.0194391759261477E-4 5.097195879630739E-5 14-15 5.097195879630739E-5 9.344859112656354E-5 0.0 1.0194391759261477E-4 1.0194391759261477E-4 16-17 1.0194391759261477E-4 1.0194391759261477E-4 0.0 1.0194391759261477E-4 1.0194391759261477E-4 18-19 1.0194391759261477E-4 1.1893457052471724E-4 0.0 1.0194391759261477E-4 1.0194391759261477E-4 20-21 1.0194391759261477E-4 1.4442054992287094E-4 0.0 1.4442054992287094E-4 1.0194391759261477E-4 22-23 1.0194391759261477E-4 1.5291587638892215E-4 0.0 1.8689718225312708E-4 1.5291587638892215E-4 24-25 1.0194391759261477E-4 1.8689718225312708E-4 0.0 2.3786914104943448E-4 2.0388783518522955E-4 26-27 1.0194391759261477E-4 2.2087848811733202E-4 0.0 2.718504469136394E-4 2.0388783518522955E-4 28-29 1.0194391759261477E-4 2.2087848811733202E-4 0.0 6.116635055556886E-4 2.0388783518522955E-4 30-31 1.0194391759261477E-4 2.4636446751548574E-4 0.0 0.0016565886608799901 2.0388783518522955E-4 32-33 1.0194391759261477E-4 2.5485979398153695E-4 0.0 0.003635999727469927 2.2087848811733202E-4 34-35 1.0194391759261477E-4 3.058317527778443E-4 0.0 0.006379990176004475 2.2087848811733202E-4 36-37 1.0194391759261477E-4 3.6529903804020296E-4 0.0 0.010857027223613473 2.2087848811733202E-4 38-39 1.0194391759261477E-4 3.7379436450625417E-4 0.0 0.017143568808491383 2.2087848811733202E-4 40-41 1.0194391759261477E-4 3.7379436450625417E-4 0.0 0.023540549637427962 2.2087848811733202E-4 42-43 1.0194391759261477E-4 3.7379436450625417E-4 0.0 0.029895053834034284 2.2087848811733202E-4 44-45 1.1043924405866601E-4 3.992803439044079E-4 0.0 0.03612212813364984 2.3786914104943448E-4 46-47 1.1893457052471724E-4 4.2476632330256157E-4 0.0 0.04310528648874395 2.4636446751548574E-4 48-49 1.1893457052471724E-4 4.2476632330256157E-4 0.0 0.050470734534810366 2.718504469136394E-4 50-51 1.1893457052471724E-4 4.587476291667665E-4 0.0 0.057165051790058735 2.718504469136394E-4 52-53 1.1893457052471724E-4 4.587476291667665E-4 0.0 0.06350256533373295 2.888410998457419E-4 54-55 1.1893457052471724E-4 4.587476291667665E-4 0.0 0.07027334052717579 3.143270792438955E-4 56-57 1.1893457052471724E-4 4.587476291667665E-4 0.0 0.0765938634179179 3.2282240570994676E-4 58-59 1.1893457052471724E-4 4.587476291667665E-4 0.0 0.08245563867949325 3.31317732175998E-4 60-61 1.1893457052471724E-4 4.927289350309714E-4 0.0 0.08877616157023537 3.3981305864204923E-4 62-63 1.359252234568197E-4 4.927289350309714E-4 0.0 0.09406025463211923 3.568037115741517E-4 64-65 1.359252234568197E-4 5.437008938272788E-4 0.0 0.09901302996182709 3.568037115741517E-4 66-67 1.5291587638892215E-4 5.5219622029333E-4 0.0 0.10435659030897332 3.6529903804020296E-4 68-69 1.5291587638892215E-4 5.606915467593812E-4 0.0 0.10991253381777083 3.7379436450625417E-4 70-71 1.5291587638892215E-4 5.606915467593812E-4 0.0 0.11474637457695397 3.7379436450625417E-4 72-73 2.2087848811733202E-4 5.606915467593812E-4 0.0 0.11792362667525713 3.7379436450625417E-4 74-75 2.2087848811733202E-4 5.606915467593812E-4 0.0 0.12104990681476399 3.7379436450625417E-4 76-77 2.2937381458338325E-4 5.776821996914838E-4 0.0 0.12392982248675535 3.7379436450625417E-4 78-79 2.3786914104943448E-4 5.86177526157535E-4 0.0 0.12568835506522796 3.7379436450625417E-4 80-81 2.3786914104943448E-4 5.946728526235862E-4 0.0 0.12633399987664784 3.8228969097230537E-4 82-83 2.3786914104943448E-4 5.946728526235862E-4 0.0 0.12675027087348437 4.2476632330256157E-4 84-85 2.3786914104943448E-4 5.946728526235862E-4 0.0 0.12697964468806777 4.2476632330256157E-4 86-87 2.3786914104943448E-4 5.946728526235862E-4 0.0 0.12713256056445668 4.2476632330256157E-4 88 2.3786914104943448E-4 5.946728526235862E-4 0.0 0.12714105589092273 4.2476632330256157E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 10810 0.0 61.697758 1 GGTATCA 7535 0.0 48.61243 1 TATACAC 14555 0.0 47.64856 3 TTATACA 14235 0.0 47.41823 2 GTATCAA 13335 0.0 35.97919 1 TACACAT 20835 0.0 33.428776 5 ATACACA 23595 0.0 30.2542 4 ACACATC 23000 0.0 29.711447 6 ATCAACG 15860 0.0 29.685865 3 TCAACGC 15860 0.0 29.685865 4 CAACGCA 16195 0.0 29.045656 5 TATCAAC 16470 0.0 28.899294 2 ACATCTC 24015 0.0 28.402792 8 AACGCAG 16855 0.0 27.93342 6 CACATCT 24985 0.0 27.232317 7 CATCTCC 27330 0.0 24.771763 9 ACGCAGA 19235 0.0 24.433117 7 CGCAGAG 19680 0.0 23.902153 8 GTGGTAT 3730 0.0 22.932798 1 TGGTATC 3540 0.0 22.488945 2 >>END_MODULE