##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140134_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6487510 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.260691390071074 32.0 27.0 33.0 18.0 34.0 2 31.068452611248382 33.0 30.0 33.0 27.0 34.0 3 32.32028929435176 33.0 33.0 33.0 30.0 34.0 4 32.44586397554686 33.0 33.0 34.0 31.0 34.0 5 32.92678346545901 33.0 33.0 34.0 32.0 34.0 6 36.74996554918605 38.0 37.0 38.0 34.0 38.0 7 36.977078108550124 38.0 38.0 38.0 35.0 38.0 8 37.1576879264926 38.0 38.0 38.0 36.0 38.0 9 37.20345710449772 38.0 38.0 38.0 36.0 38.0 10-11 37.27627101923542 38.0 38.0 38.0 36.5 38.0 12-13 37.32078594098506 38.0 38.0 38.0 37.0 38.0 14-15 37.318423170060626 38.0 38.0 38.0 37.0 38.0 16-17 37.360882372435654 38.0 38.0 38.0 37.0 38.0 18-19 37.36417570069256 38.0 38.0 38.0 37.0 38.0 20-21 37.382705264547994 38.0 38.0 38.0 37.0 38.0 22-23 37.31801062328941 38.0 38.0 38.0 37.0 38.0 24-25 37.38591985448327 38.0 38.0 38.0 37.0 38.0 26-27 37.35333805945032 38.0 38.0 38.0 37.0 38.0 28-29 37.3187785044767 38.0 38.0 38.0 37.0 38.0 30-31 37.32457240894091 38.0 38.0 38.0 37.0 38.0 32-33 37.298208039928774 38.0 38.0 38.0 37.0 38.0 34-35 37.20466367208378 38.0 38.0 38.0 37.0 38.0 36-37 37.22105242427793 38.0 38.0 38.0 37.0 38.0 38-39 37.193256670639045 38.0 38.0 38.0 37.0 38.0 40-41 37.264493628787676 38.0 38.0 38.0 37.0 38.0 42-43 37.247522575349905 38.0 38.0 38.0 37.0 38.0 44-45 37.208258859819225 38.0 38.0 38.0 37.0 38.0 46-47 37.168370018109265 38.0 38.0 38.0 37.0 38.0 48-49 37.10851128205424 38.0 38.0 38.0 36.0 38.0 50-51 37.07124255584091 38.0 38.0 38.0 36.0 38.0 52-53 36.98209042081287 38.0 38.0 38.0 36.0 38.0 54-55 37.02056504504306 38.0 38.0 38.0 36.0 38.0 56-57 36.98536076174159 38.0 38.0 38.0 36.0 38.0 58-59 36.96361968966916 38.0 38.0 38.0 36.0 38.0 60-61 36.9559628378279 38.0 38.0 38.0 36.0 38.0 62-63 36.96876793266112 38.0 38.0 38.0 36.0 38.0 64-65 36.980843021183986 38.0 38.0 38.0 36.0 38.0 66-67 36.9758561524135 38.0 38.0 38.0 36.0 38.0 68-69 36.9626553864981 38.0 38.0 38.0 36.0 38.0 70-71 36.9646578704975 38.0 38.0 38.0 36.0 38.0 72-73 36.98129386661323 38.0 38.0 38.0 36.0 38.0 74-75 36.934321017368646 38.0 38.0 38.0 36.0 38.0 76-77 36.95034886755626 38.0 38.0 38.0 36.0 38.0 78-79 36.96283916498001 38.0 38.0 38.0 36.0 38.0 80-81 36.952379831353355 38.0 38.0 38.0 36.0 38.0 82-83 36.90884229200218 38.0 38.0 38.0 35.5 38.0 84-85 36.90734134533231 38.0 38.0 38.0 35.0 38.0 86-87 36.907062603249614 38.0 38.0 38.0 35.0 38.0 88-89 36.89263295078097 38.0 38.0 38.0 35.0 38.0 90-91 36.903270857572736 38.0 38.0 38.0 35.0 38.0 92-93 36.882628804867664 38.0 38.0 38.0 35.0 38.0 94-95 36.82311083756236 38.0 38.0 38.0 35.0 38.0 96-97 36.85401051715231 38.0 38.0 38.0 35.0 38.0 98-99 36.88320278142352 38.0 38.0 38.0 35.0 38.0 100 35.41392148840465 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 9.0 19 20.0 20 40.0 21 132.0 22 456.0 23 1302.0 24 3231.0 25 6546.0 26 11788.0 27 19355.0 28 30209.0 29 43792.0 30 58990.0 31 75822.0 32 97319.0 33 128716.0 34 187716.0 35 327573.0 36 905822.0 37 4588671.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.094196386595165 21.76243273613451 14.185010890156624 23.9583599871137 2 14.680497065547113 20.390177090855495 42.83104865142203 22.098277192175367 3 17.985821987172272 26.932937290270072 30.595652261036975 24.485588461520678 4 12.600242620049912 18.666221709099485 37.91853885389001 30.814996816960587 5 13.27968665944253 37.70896692259434 35.64304332478871 13.368303093174422 6 29.291715927990865 37.94908986652815 18.612688072927828 14.146506132553169 7 26.110711197362317 33.08038060827652 22.220975381926195 18.58793281243497 8 24.011508267424635 37.21933376595951 21.202125314643062 17.56703265197279 9 25.048531717099472 17.362239133350084 20.728214677125738 36.861014472424706 10-11 24.032178755793826 27.01108745882473 28.56767080127815 20.3890629841033 12-13 25.219514112502335 24.225049364085756 28.607416404753135 21.948020118658775 14-15 22.29912555048085 25.76665777779148 25.99679229781534 25.937424373912332 16-17 21.872698462121832 29.397973953026664 26.565562134008267 22.163765450843236 18-19 21.94859815244986 27.87893197852489 28.63797512450848 21.53449474451677 20-21 22.614737908784015 26.989731598500576 28.56259720245 21.83293329026541 22-23 22.296121747077873 27.512235080647056 28.427269664591886 21.764373507683185 24-25 22.255983420939017 27.70732247255612 28.7233033128446 21.313390793660265 26-27 22.217491536608144 27.841577792861493 28.809667249843802 21.13126342068656 28-29 21.81613076815231 27.35318836133708 29.13918770707063 21.691493163439983 30-31 22.220277813393825 27.911371186727603 28.533370159595993 21.33498084028258 32-33 22.752699815339398 27.236939854785224 28.773362466524222 21.236997863351153 34-35 22.140063334736652 27.244002202610208 29.038706120819885 21.577228341833255 36-37 21.755837194491367 27.77197365149805 28.912285978356966 21.55990317565362 38-39 21.725605101683634 27.08301632536258 29.28988492532388 21.90149364762991 40-41 21.96091774684926 26.922459385420588 29.40197029462761 21.71465257310254 42-43 22.306626754308244 26.78118563595528 29.247703163333505 21.664484446402973 44-45 21.814828894456625 27.30318644159746 29.096426945916935 21.78555771802898 46-47 22.477168902940157 26.7880635659764 28.46217375226831 22.272593778815132 48-49 22.18522769489106 26.865214716169948 28.557249386969524 22.392308201969467 50-51 21.80898054190863 27.117190094205192 28.931017510190525 22.14281185369565 52-53 22.0405922928742 27.239805692977264 29.20331915935427 21.516282854794262 54-55 21.955645628832578 27.34535518944652 28.593454429805238 22.10554475191567 56-57 22.390430924872714 27.98048733422772 27.85565995673608 21.77342178416348 58-59 21.666752333380416 28.674569932766914 28.513421169896606 21.145256563956064 60-61 22.084260443776724 29.355138139986025 27.470866452597107 21.08973496364014 62-63 21.534560685643857 29.871795825661206 27.444448748903326 21.149194739791614 64-65 21.620627632466032 29.676337279149916 27.483413613684338 21.219621474699714 66-67 21.740902678956115 29.526441205233734 27.423099896877567 21.309556218932588 68-69 21.888086552761287 29.018497971153977 27.700162072114253 21.39325340397048 70-71 21.998331364002528 28.265854356280478 27.997386049264755 21.73842823045224 72-73 22.248255931557136 27.91365336365409 28.033113418439843 21.804977286348937 74-75 22.017118721191274 28.014619102836996 28.044036668189566 21.924225507782165 76-77 22.240232720571846 27.771841702456495 28.020946337548857 21.966979239422805 78-79 22.208196498945743 27.837666241301662 27.98564564192416 21.968491617828434 80-81 22.211947064110202 27.807083012497568 27.96812639643422 22.01284352695801 82-83 22.236043819241804 27.719671630971387 28.05281417656163 21.991470373225177 84-85 22.35774999074508 27.721138539944224 27.980305150053063 21.940806319257632 86-87 22.20278812372029 27.742031355062046 28.025500130608812 22.029680390608846 88-89 22.259873317051856 27.726387529344798 27.977206847252518 22.036532306350825 90-91 22.300083895096034 27.708779519682235 28.0211008757728 21.970035709448936 92-93 22.322676267206113 27.733775305316183 27.912153061173395 22.03139536630431 94-95 22.224054913826784 27.87251725240221 27.90654797436251 21.996879859408494 96-97 22.326788059904455 27.923570471836296 27.99875352253648 21.750887945722766 98-99 23.310272063871867 29.845911561093708 28.230285385287594 18.61353098974683 100 22.320221555845468 30.743306387415352 22.195071229249898 24.741400827489283 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1219.0 1 1115.5 2 1368.0 3 1880.5 4 2450.5 5 3463.0 6 4416.5 7 5735.0 8 7302.0 9 8296.0 10 8461.0 11 8530.0 12 9533.5 13 11837.0 14 16489.5 15 22092.0 16 26098.5 17 28147.5 18 28132.5 19 25943.5 20 22902.5 21 20528.5 22 20316.0 23 22753.0 24 28299.0 25 37320.0 26 49136.0 27 62293.0 28 74702.5 29 87545.0 30 100214.0 31 113800.0 32 130200.0 33 146657.5 34 163202.5 35 179436.5 36 195792.5 37 210996.5 38 221039.5 39 229023.5 40 240153.0 41 250330.5 42 259729.0 43 285353.0 44 317314.5 45 329733.5 46 316364.5 47 292881.5 48 275264.0 49 263846.5 50 257246.5 51 248652.0 52 236317.5 53 223305.5 54 209712.0 55 193752.0 56 176471.5 57 158210.5 58 139227.0 59 120481.5 60 100785.5 61 81001.5 62 62958.5 63 48186.0 64 36426.0 65 26697.5 66 19144.0 67 14085.5 68 10499.5 69 7524.0 70 5386.5 71 3794.0 72 2639.5 73 1810.5 74 1190.5 75 753.5 76 480.0 77 316.0 78 223.0 79 142.0 80 88.5 81 60.0 82 40.5 83 30.5 84 22.5 85 15.0 86 11.0 87 8.0 88 4.5 89 2.0 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.017294771029254676 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.8540032649574064E-4 26-27 2.852279225493641E-4 28-29 0.0036629559252322062 30-31 0.00598982701981637 32-33 0.0041687084830665366 34-35 0.00218674304861913 36-37 0.0 38-39 0.0 40-41 3.779715949621741E-4 42-43 0.0 44-45 0.0 46-47 3.298030995056171E-4 48-49 0.0012732024935305905 50-51 0.002581882440682885 52-53 0.0 54-55 0.0030063398987766185 56-57 0.04129716135827115 58-59 0.06422138361057511 60-61 0.04358179277798331 62-63 0.014031707040530856 64-65 1.898863262770136E-4 66-67 0.0 68-69 2.6567740210009133E-5 70-71 0.0030467002528671333 72-73 0.00533723380204282 74-75 0.004354899045061789 76-77 0.0031206765626787887 78-79 0.008061068404633014 80-81 0.01625881920278221 82-83 0.04428404733835677 84-85 0.019865203844847072 86-87 0.0018866441929091741 88-89 0.0014234718931057035 90-91 1.2888617853372937E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 47.0 20-21 188.0 22-23 427.0 24-25 555.0 26-27 1617.0 28-29 4155.0 30-31 12218.0 32-33 15593.0 34-35 21354.0 36-37 33549.0 38-39 39067.0 40-41 36942.0 42-43 42290.0 44-45 50537.0 46-47 51405.0 48-49 47141.0 50-51 42870.0 52-53 39750.0 54-55 43230.0 56-57 45606.0 58-59 46503.0 60-61 52040.0 62-63 53137.0 64-65 65801.0 66-67 76169.0 68-69 75480.0 70-71 95137.0 72-73 52625.0 74-75 46612.0 76-77 48634.0 78-79 50600.0 80-81 51066.0 82-83 46473.0 84-85 45652.0 86-87 47749.0 88-89 49321.0 90-91 50674.0 92-93 50619.0 94-95 59168.0 96-97 192518.0 98-99 428132.0 100-101 4274859.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.16116670222176 #Duplication Level Percentage of deduplicated Percentage of total 1 89.96164240880462 77.51200068390676 2 7.255068465748982 12.502103270268606 3 1.6347184139696016 4.225477373316791 4 0.5671647156351237 1.9547029444582433 5 0.23966538424022404 1.0324924562136986 6 0.11822189554070413 0.6111681869721154 7 0.07516422004119448 0.4533365825108285 8 0.0413867802693041 0.28527466192413864 9 0.026821457703495487 0.2079871279548718 >10 0.07810865427216018 0.994140819782043 >50 0.0012839971771625525 0.07257234530581787 >100 6.995368550890658E-4 0.11359356479330152 >500 5.40697423771268E-5 0.03514998259280665 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.082846885785147E-5 0.0 0.0 0.0 3 0.0 3.082846885785147E-5 0.0 0.0 0.0 4 0.0 6.165693771570295E-5 0.0 0.0 1.5414234428925736E-5 5 0.0 6.165693771570295E-5 0.0 0.0 1.5414234428925736E-5 6 1.5414234428925736E-4 6.165693771570295E-5 0.0 0.0 1.5414234428925736E-5 7 1.5414234428925736E-4 7.707117214462868E-5 0.0 3.082846885785147E-5 1.5414234428925736E-5 8 1.5414234428925736E-4 7.707117214462868E-5 0.0 3.082846885785147E-5 1.5414234428925736E-5 9 1.5414234428925736E-4 1.0789964100248014E-4 0.0 3.082846885785147E-5 1.5414234428925736E-5 10-11 1.5414234428925736E-4 1.0789964100248014E-4 0.0 3.082846885785147E-5 1.5414234428925736E-5 12-13 1.5414234428925736E-4 1.0789964100248014E-4 0.0 3.082846885785147E-5 1.5414234428925736E-5 14-15 1.5414234428925736E-4 1.5414234428925736E-4 0.0 4.624270328677721E-5 3.082846885785147E-5 16-17 2.157992820049603E-4 1.5414234428925736E-4 0.0 6.165693771570295E-5 4.6242703286777206E-5 18-19 2.157992820049603E-4 1.695565787181831E-4 0.0 6.936405493016581E-5 4.6242703286777206E-5 20-21 2.157992820049603E-4 1.8497081314710882E-4 0.0 7.707117214462868E-5 4.6242703286777206E-5 22-23 2.157992820049603E-4 1.9267793036157168E-4 0.0 1.1560675821694301E-4 6.165693771570295E-5 24-25 2.157992820049603E-4 2.2350639921942317E-4 0.0 1.464352270747945E-4 7.707117214462868E-5 26-27 2.157992820049603E-4 2.466277508628118E-4 0.0 2.0809216479049744E-4 7.707117214462868E-5 28-29 2.157992820049603E-4 2.466277508628118E-4 0.0 5.549124394413265E-4 7.707117214462868E-5 30-31 2.157992820049603E-4 2.620419852917375E-4 0.0 0.0016724444355384423 7.707117214462868E-5 32-33 2.157992820049603E-4 2.620419852917375E-4 0.0 0.0036531735596553993 7.707117214462868E-5 34-35 2.3121351643388605E-4 3.082846885785147E-4 0.0 0.006520221163435586 7.707117214462868E-5 36-37 2.3121351643388605E-4 3.699416262942177E-4 0.0 0.010697478693674461 7.707117214462868E-5 38-39 2.3121351643388605E-4 4.007700951520691E-4 0.0 0.01666278741766872 7.707117214462868E-5 40-41 2.3121351643388605E-4 4.855483845111607E-4 0.0 0.022859309658096866 7.707117214462868E-5 42-43 2.3121351643388605E-4 5.086697361545492E-4 0.0 0.02886315396816344 8.477828935909155E-5 44-45 2.3121351643388605E-4 5.626195566557893E-4 0.0 0.035329425311097784 9.248540657355441E-5 46-47 2.3121351643388605E-4 6.011551427281037E-4 0.0 0.04208856710818172 1.0019252378801728E-4 48-49 2.3121351643388605E-4 6.165693771570294E-4 0.0 0.049880462612003684 1.233138754314059E-4 50-51 2.7745621972066325E-4 6.936405493016581E-4 0.0 0.05681686810502026 1.233138754314059E-4 52-53 2.9287045414958895E-4 6.936405493016581E-4 0.0 0.06354518143324635 1.3102099264586874E-4 54-55 2.9287045414958895E-4 7.321761353739724E-4 0.0 0.06945654033673937 1.464352270747945E-4 56-57 2.9287045414958895E-4 7.707117214462868E-4 0.0 0.07436597400235222 1.618494615037202E-4 58-59 2.9287045414958895E-4 8.015401903041382E-4 0.0 0.07933706460568077 1.695565787181831E-4 60-61 3.8535586072314335E-4 8.323686591619897E-4 0.0 0.0842464982712936 1.695565787181831E-4 62-63 4.315985640099206E-4 8.323686591619897E-4 0.0 0.08849311985646265 1.8497081314710882E-4 64-65 4.315985640099206E-4 0.0010096323550946359 0.0 0.09291700513756435 1.9267793036157168E-4 66-67 4.778412672966978E-4 0.0010327537067380242 0.0 0.09722528366044908 2.0038504757603456E-4 68-69 4.778412672966978E-4 0.0010327537067380242 0.0 0.1013717127218301 2.0038504757603456E-4 70-71 5.009626189400864E-4 0.001040460823952487 0.0 0.10559521295535576 2.0038504757603456E-4 72-73 5.857409082991779E-4 0.00104816794116695 0.0 0.10883220218543016 2.157992820049603E-4 74-75 5.857409082991779E-4 0.0010712892928103385 0.0 0.11166071420313803 2.157992820049603E-4 76-77 5.934480255136408E-4 0.0011252391133115788 0.0 0.11437361946262896 2.157992820049603E-4 78-79 6.011551427281037E-4 0.0011406533477405045 0.0 0.11612313507031202 2.157992820049603E-4 80-81 6.011551427281037E-4 0.0011406533477405045 0.0 0.11677824003354137 2.3121351643388602E-4 82-83 6.011551427281037E-4 0.0011406533477405045 0.0 0.11742563787955626 2.620419852917375E-4 84-85 6.011551427281037E-4 0.0011406533477405045 0.0 0.1175797802238455 2.620419852917375E-4 86-87 6.011551427281037E-4 0.0011406533477405045 0.0 0.11765685139599014 2.620419852917375E-4 88 6.011551427281037E-4 0.001217724519885133 0.0 0.11765685139599014 2.620419852917375E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 9255 0.0 55.202522 1 GGTATCA 9445 0.0 50.973953 1 TATACAC 12685 0.0 42.186607 3 TTATACA 13000 0.0 40.055088 2 GTATCAA 17610 0.0 38.41591 1 ATCAACG 20945 0.0 31.987982 3 TCAACGC 21050 0.0 31.868967 4 TATCAAC 21710 0.0 31.101965 2 CAACGCA 21705 0.0 30.94657 5 AACGCAG 22460 0.0 29.906288 6 TACACAT 19020 0.0 28.427172 5 ACACATC 19785 0.0 26.31427 6 GTGGTAT 4290 0.0 26.16614 1 ATACACA 21680 0.0 25.864471 4 ACGCAGA 26080 0.0 25.755186 7 CGCAGAG 26345 0.0 25.496119 8 ACATCTC 20680 0.0 25.196064 8 TGGTATC 4265 0.0 24.718328 2 CACATCT 21760 0.0 23.729795 7 CATCTCC 22725 0.0 22.740908 9 >>END_MODULE