##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140132_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6137550 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 21.542816922061736 18.0 18.0 25.0 18.0 33.0 2 28.1433806649233 29.0 27.0 31.0 25.0 33.0 3 30.126159623954184 31.0 29.0 33.0 27.0 33.0 4 31.262682177741933 33.0 31.0 33.0 29.0 33.0 5 32.26508639440819 33.0 33.0 33.0 31.0 33.0 6 35.85267297211428 38.0 36.0 38.0 31.0 38.0 7 35.98881100764963 38.0 36.0 38.0 32.0 38.0 8 35.77378937849794 38.0 36.0 38.0 31.0 38.0 9 36.695962884212754 38.0 37.0 38.0 34.0 38.0 10-11 36.84294531205448 38.0 38.0 38.0 34.5 38.0 12-13 37.01396045653396 38.0 38.0 38.0 35.5 38.0 14-15 36.92126117098842 38.0 38.0 38.0 35.0 38.0 16-17 37.02780767570122 38.0 38.0 38.0 35.5 38.0 18-19 37.16586072618553 38.0 38.0 38.0 36.0 38.0 20-21 37.23283201718762 38.0 38.0 38.0 36.0 38.0 22-23 37.218561981856574 38.0 38.0 38.0 36.0 38.0 24-25 37.29093490773714 38.0 38.0 38.0 36.5 38.0 26-27 37.27546920334324 38.0 38.0 38.0 37.0 38.0 28-29 37.2562092961866 38.0 38.0 38.0 36.5 38.0 30-31 37.26591366972242 38.0 38.0 38.0 37.0 38.0 32-33 37.250123040142554 38.0 38.0 38.0 36.5 38.0 34-35 37.16533036412974 38.0 38.0 38.0 36.0 38.0 36-37 37.19100061643617 38.0 38.0 38.0 36.0 38.0 38-39 37.177650001623334 38.0 38.0 38.0 36.0 38.0 40-41 37.17325426408472 38.0 38.0 38.0 36.0 38.0 42-43 37.15355799367775 38.0 38.0 38.0 36.0 38.0 44-45 37.117270781226836 38.0 38.0 38.0 36.0 38.0 46-47 37.07095909250714 38.0 38.0 38.0 36.0 38.0 48-49 37.01291774080451 38.0 38.0 38.0 36.0 38.0 50-51 36.95991841696333 38.0 38.0 38.0 36.0 38.0 52-53 36.857856168215704 38.0 38.0 38.0 35.5 38.0 54-55 36.88063094940284 38.0 38.0 38.0 35.5 38.0 56-57 36.82875925152645 38.0 38.0 38.0 35.0 38.0 58-59 36.80283371808539 38.0 38.0 38.0 35.0 38.0 60-61 36.79491651937092 38.0 38.0 38.0 35.0 38.0 62-63 36.79501687612789 38.0 38.0 38.0 35.0 38.0 64-65 36.79601032241442 38.0 38.0 38.0 35.0 38.0 66-67 36.786200537726586 38.0 38.0 38.0 35.0 38.0 68-69 36.76284899202818 38.0 38.0 38.0 35.0 38.0 70-71 36.75503591025445 38.0 38.0 38.0 35.0 38.0 72-73 36.76273678894778 38.0 38.0 38.0 35.0 38.0 74-75 36.69561618507059 38.0 38.0 38.0 34.5 38.0 76-77 36.68785602829166 38.0 38.0 38.0 34.0 38.0 78-79 36.68426282252058 38.0 38.0 38.0 34.0 38.0 80-81 36.65959338432977 38.0 38.0 38.0 34.0 38.0 82-83 36.595926108199365 38.0 38.0 38.0 34.0 38.0 84-85 36.58048270220113 38.0 38.0 38.0 34.0 38.0 86-87 36.56553768187058 38.0 38.0 38.0 34.0 38.0 88-89 36.53801500278185 38.0 38.0 38.0 34.0 38.0 90-91 36.54219942257164 38.0 38.0 38.0 34.0 38.0 92-93 36.50632613100815 38.0 38.0 38.0 34.0 38.0 94-95 36.43566695097243 38.0 37.5 38.0 34.0 38.0 96-97 36.44684074316814 38.0 37.0 38.0 34.0 38.0 98-99 36.471857591423635 38.0 37.0 38.0 34.0 38.0 100 34.737714004216464 38.0 34.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 7.0 19 15.0 20 36.0 21 154.0 22 562.0 23 1545.0 24 3774.0 25 7552.0 26 13148.0 27 21646.0 28 33336.0 29 48300.0 30 65133.0 31 85945.0 32 114151.0 33 161882.0 34 253669.0 35 479329.0 36 1442286.0 37 3405080.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.883227020553804 16.96036692165441 19.63845508386897 23.51795097392282 2 14.334612644452108 20.98574854366464 41.84460346026715 22.8350353516161 3 18.329854746600844 25.30038859153897 31.303451703041112 25.066304958819074 4 12.585314987250612 17.86743896180072 38.666112699692874 30.881133351255798 5 13.637982582626618 36.9066810046354 35.60761215794576 13.84772425479222 6 30.105612174238907 37.695350750706716 18.643286001743366 13.555751073311011 7 26.637892970322035 32.564964847536885 22.832221326099177 17.964920856041903 8 24.35251851308747 36.86156528256389 21.1115347329146 17.674381471434042 9 25.52624418538342 17.183354921752166 21.110948179648233 36.179452713216186 10-11 24.341773183110522 26.76375752539694 28.696279460045133 20.1981898314474 12-13 25.180112585640853 24.131062068740782 28.94760938811089 21.741215957507475 14-15 22.26714242653828 25.54328681640068 26.663636141457097 25.525934615603944 16-17 21.888652638267715 28.759781997702667 27.253187346742592 22.09837801728703 18-19 21.88638789093368 27.718307793826526 29.12544907984456 21.26985523539523 20-21 22.64831496601826 26.883403021187412 29.040197637877064 21.428084374917262 22-23 22.325041535300137 26.836964995475583 28.97807886089689 21.859914608327394 24-25 22.14241543075543 26.944451007726293 29.10441620151104 21.808717360007236 26-27 22.019477200372247 27.11952891761363 29.036937289809583 21.824056592204542 28-29 21.836739185008167 27.104151248504373 29.07142181809883 21.98768774838863 30-31 22.21717366348787 26.854148443123172 29.088050045163804 21.840627848225154 32-33 21.97107434338178 27.08655148964347 29.034983079184222 21.90739108779053 34-35 22.10299087956719 27.233817216009275 29.02641592661899 21.636775977804543 36-37 22.150531249518156 27.054292201505746 28.910737548926562 21.88443900004954 38-39 22.002154910183812 27.137930881189998 29.04418998312525 21.815724225500947 40-41 22.28125616439194 26.990128209431504 28.920842634865114 21.80777299131144 42-43 22.22355179661531 27.044282217914994 28.810816022177853 21.921349963291846 44-45 22.189792552155847 27.206569187297514 28.717626871737806 21.88601138880883 46-47 22.339127435663368 27.086588901319057 28.344624810274198 22.229658852743373 48-49 22.20357669466878 27.214956779351485 28.430875708507504 22.150590817472235 50-51 22.162027519800144 27.38368172680406 28.378402397031216 22.07588835636458 52-53 22.325089749897096 27.351340446075902 28.294920790559924 22.02864901346708 54-55 22.256504732507477 27.280565365801806 28.26278162868793 22.20014827300279 56-57 22.340131963544295 27.457095249350445 28.104619519407315 22.098153267697946 58-59 22.161024331945985 27.59100765054816 28.32085033810341 21.927117679402443 60-61 22.336753576611386 27.635739583004177 28.159459320118437 21.868047520266 62-63 22.154270706660043 27.773212022321598 28.142760775268506 21.929756495749857 64-65 22.112606927064576 27.679147847328974 28.19594703422189 22.012298191384563 66-67 22.235139759850465 27.68195476738834 28.056228044290656 22.02667742847054 68-69 22.21805866210235 27.658136917834632 28.195524142874305 21.928280277188712 70-71 22.212357788546257 27.231431262561685 28.254102042700218 22.302108906191837 72-73 22.2628104401351 27.224103689144947 28.300459409518936 22.21262646120102 74-75 22.160132524689768 27.40614125491232 28.212703823843377 22.221022396554535 76-77 22.280028938046897 27.302049319931736 28.055531242293704 22.36239049972766 78-79 22.25680863874434 27.420083334613466 28.00564930897314 22.31745871766906 80-81 22.29121693813401 27.38792567387136 27.979208195661652 22.341649192332973 82-83 22.340652264195686 27.35635202018898 28.0375909999435 22.26540471567183 84-85 22.45261818889616 27.389520061679345 27.932450400951268 22.225411348473223 86-87 22.240146495437795 27.42656786459627 27.978568575543676 22.354717064422253 88-89 22.35844898101078 27.42109178490538 27.93064010322992 22.28981913085392 90-91 22.365861079028626 27.402962709931387 27.989682049800184 22.241494161239803 92-93 22.39606531503814 27.397901354112392 27.93673479925293 22.269298531596537 94-95 22.319940900547206 27.527467238368665 27.87047235953078 22.28211950155335 96-97 22.31187343363188 27.66669695263041 27.98563772297276 22.03579189076495 98-99 23.40269832801264 29.551407569112158 28.180995323513812 18.86489877936139 100 22.33871325477854 30.405466927841502 22.170054701964183 25.085765115415775 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1533.0 1 1378.5 2 1552.0 3 2010.0 4 2409.0 5 3128.0 6 3985.5 7 5879.5 8 7769.5 9 8247.0 10 7982.0 11 7765.5 12 8402.5 13 10191.5 14 14035.0 15 18600.0 16 21952.0 17 23496.5 18 22881.0 19 20973.5 20 18758.0 21 17009.0 22 17060.5 23 19377.5 24 24125.0 25 31811.5 26 42449.5 27 54625.5 28 65715.5 29 77472.5 30 90343.5 31 102737.5 32 116954.0 33 132513.5 34 147727.0 35 162340.5 36 178929.0 37 193893.5 38 203220.0 39 210908.5 40 221396.5 41 231173.5 42 237423.0 43 246523.5 44 256541.5 45 262509.0 46 263703.0 47 262359.0 48 258875.5 49 252965.5 50 246570.5 51 238353.5 52 227590.5 53 215331.0 54 202251.5 55 187632.0 56 171008.5 57 152925.0 58 135199.5 59 116672.0 60 96677.0 61 78096.0 62 61045.5 63 46255.0 64 34034.0 65 24607.0 66 18166.5 67 13879.5 68 10522.5 69 7546.5 70 5290.0 71 3637.5 72 2537.5 73 1648.5 74 1005.5 75 597.0 76 343.0 77 202.5 78 120.5 79 76.0 80 51.5 81 34.5 82 22.5 83 17.0 84 12.5 85 7.5 86 5.5 87 6.5 88 5.5 89 3.0 90 1.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.014891935707244747 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.9107954085306504E-4 26-27 3.3407906298808137E-4 28-29 0.003952870374785088 30-31 0.006075844481216669 32-33 0.004213795230620768 34-35 0.002028794151837245 36-37 0.0 38-39 8.232388471922987E-6 40-41 4.960424903383324E-4 42-43 0.0 44-45 8.349076212287953E-6 46-47 3.2767370823462514E-4 48-49 0.0014288312270472848 50-51 0.002797807471387529 52-53 0.0 54-55 0.003153731070094466 56-57 0.038274863992012145 58-59 0.05983697011941835 60-61 0.04101803472341132 62-63 0.013561845140108391 64-65 2.7479341297141917E-4 66-67 0.0 68-69 2.6997140462882173E-5 70-71 0.0030678546828033404 72-73 0.005025468782868076 74-75 0.004232510717058318 76-77 0.0030104177177577296 78-79 0.007399230442569515 80-81 0.015394628068147015 82-83 0.03958027763145752 84-85 0.018519962195851145 86-87 0.0016069631455587219 88-89 0.001259695382220386 90-91 6.898865392886442E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 34.0 20-21 175.0 22-23 397.0 24-25 474.0 26-27 1130.0 28-29 2697.0 30-31 7713.0 32-33 9932.0 34-35 13658.0 36-37 21435.0 38-39 25665.0 40-41 25992.0 42-43 30454.0 44-45 37102.0 46-47 37789.0 48-49 35114.0 50-51 31550.0 52-53 29779.0 54-55 32545.0 56-57 33572.0 58-59 36061.0 60-61 37332.0 62-63 36913.0 64-65 39624.0 66-67 43228.0 68-69 45138.0 70-71 49842.0 72-73 40161.0 74-75 40147.0 76-77 42638.0 78-79 43929.0 80-81 44634.0 82-83 42345.0 84-85 42512.0 86-87 44175.0 88-89 46336.0 90-91 47709.0 92-93 48398.0 94-95 58382.0 96-97 197369.0 98-99 450260.0 100-101 4283210.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.46435135671989 #Duplication Level Percentage of deduplicated Percentage of total 1 90.48062799575301 78.23348810001455 2 6.835661218633985 11.820820267269458 3 1.5384318782200017 3.9905854337037825 4 0.5458269072713231 1.8877827796103783 5 0.23222213051032106 1.003946794262523 6 0.13045945005598283 0.6768055036466971 7 0.0678777020930658 0.41083010381431223 8 0.04231495829114951 0.2926988337064719 9 0.03385453268114166 0.263448918788381 >10 0.09033082008886957 1.1703139367961797 >50 0.0016347046160204697 0.09754210671630603 >100 7.294425898967479E-4 0.11533036820104715 >500 0.0 0.0 >1k 2.8259195219969196E-5 0.03640685346990758 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.887943886404184E-5 0.0 0.0 0.0 3 0.0 4.887943886404184E-5 0.0 0.0 0.0 4 0.0 1.1405202401609763E-4 0.0 0.0 1.6293146288013947E-5 5 0.0 1.1405202401609763E-4 0.0 0.0 1.6293146288013947E-5 6 0.0 1.1405202401609763E-4 0.0 0.0 1.6293146288013947E-5 7 0.0 1.1405202401609763E-4 0.0 1.6293146288013947E-5 1.6293146288013947E-5 8 0.0 1.1405202401609763E-4 0.0 1.6293146288013947E-5 1.6293146288013947E-5 9 0.0 1.3034517030411158E-4 0.0 3.2586292576027895E-5 1.6293146288013947E-5 10-11 0.0 1.3034517030411158E-4 0.0 3.2586292576027895E-5 1.6293146288013947E-5 12-13 0.0 1.3034517030411158E-4 0.0 5.702601200804882E-5 2.4439719432020923E-5 14-15 0.0 1.8737118231216038E-4 0.0 6.517258515205579E-5 3.2586292576027895E-5 16-17 0.0 1.9551775545616735E-4 0.0 1.0590545087209066E-4 3.2586292576027895E-5 18-19 0.0 2.199574748881883E-4 0.0 1.6293146288013947E-4 3.2586292576027895E-5 20-21 0.0 2.443971943202092E-4 0.0 1.6293146288013947E-4 3.2586292576027895E-5 22-23 0.0 2.9327663318425105E-4 0.0 1.9551775545616735E-4 4.073286572003487E-5 24-25 0.0 3.584492183363068E-4 0.0 2.3625062117620224E-4 4.887943886404184E-5 26-27 0.0 3.910355109123347E-4 0.0 3.01423206328258E-4 5.702601200804882E-5 28-29 0.0 3.910355109123347E-4 0.0 4.725012423524045E-4 6.517258515205579E-5 30-31 0.0 5.213806812164463E-4 0.0 0.001197546252169025 7.331915829606276E-5 32-33 8.146573144006974E-6 5.213806812164463E-4 0.0 0.0028920334661224753 9.775887772808368E-5 34-35 1.6293146288013947E-5 5.946998395125091E-4 0.0 0.005124194507580386 9.775887772808368E-5 36-37 1.6293146288013947E-5 6.517258515205579E-4 0.0 0.008790152422383525 9.775887772808368E-5 38-39 1.6293146288013947E-5 6.761655709525788E-4 0.0 0.01792246091681534 9.775887772808368E-5 40-41 1.6293146288013947E-5 7.820710218246694E-4 0.0 0.028016065042239982 1.0590545087209066E-4 42-43 1.6293146288013947E-5 8.146573144006973E-4 0.0 0.034248193497405315 1.221985971601046E-4 44-45 1.6293146288013947E-5 9.042696189847741E-4 0.0 0.04224812832482017 1.3034517030411158E-4 46-47 1.6293146288013947E-5 9.612956309928229E-4 0.0 0.050296942591099056 1.4663831659212552E-4 48-49 1.6293146288013947E-5 9.612956309928229E-4 0.0 0.0582968774185139 1.792246091681534E-4 50-51 1.6293146288013947E-5 0.0010101750698568647 0.0 0.06625607938020872 1.792246091681534E-4 52-53 1.6293146288013947E-5 0.0010101750698568647 0.0 0.08800742967470734 2.0366432860017435E-4 54-55 1.6293146288013947E-5 0.0010101750698568647 0.0 0.11507034565909849 2.2810404803219527E-4 56-57 1.6293146288013947E-5 0.0010264682161448787 0.0 0.15002729102003243 2.3625062117620224E-4 58-59 1.6293146288013947E-5 0.0010264682161448787 0.0 0.17831219297602463 2.443971943202092E-4 60-61 1.6293146288013947E-5 0.0010509079355768996 0.0 0.18730600972700834 2.6069034060822316E-4 62-63 1.6293146288013947E-5 0.0010753476550089205 0.0 0.19830388347141775 2.6069034060822316E-4 64-65 1.6293146288013947E-5 0.0013034517030411157 0.0 0.20354213000301424 2.6069034060822316E-4 66-67 1.6293146288013947E-5 0.0013115982761851227 0.0 0.2081775301219542 2.6069034060822316E-4 68-69 1.6293146288013947E-5 0.0013197448493291297 0.0 0.2125115070345659 2.6069034060822316E-4 70-71 1.6293146288013947E-5 0.0013278914224731366 0.0 0.21642186214368925 2.9327663318425105E-4 72-73 1.6293146288013947E-5 0.0013360379956171436 0.0 0.21954199965784393 3.2586292576027893E-4 74-75 1.6293146288013947E-5 0.0013604777150491645 0.0 0.221961531881614 3.2586292576027893E-4 76-77 1.6293146288013947E-5 0.0014012105807691994 0.0 0.224283305227656 3.2586292576027893E-4 78-79 1.6293146288013947E-5 0.0014175037270572133 0.0 0.22611628418505755 3.2586292576027893E-4 80-81 1.6293146288013947E-5 0.0014256503002012203 0.0 0.22671913059771406 3.2586292576027893E-4 82-83 1.6293146288013947E-5 0.0014337968733452273 0.0 0.22719163184006647 3.2586292576027893E-4 84-85 1.6293146288013947E-5 0.0014663831659212552 0.0 0.22746861532696272 3.2586292576027893E-4 86-87 1.6293146288013947E-5 0.001498969458497283 0.0 0.22761525364355484 3.2586292576027893E-4 88 1.6293146288013947E-5 0.001547848897361325 0.0 0.22763154678984285 3.2586292576027893E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7305 0.0 48.67179 1 GTATCAA 14025 0.0 38.493618 1 TCAACGC 17140 0.0 32.20509 4 ATCAACG 17195 0.0 32.152874 3 CAACGCA 17640 0.0 31.34176 5 TATCAAC 18145 0.0 30.716156 2 AACGCAG 18320 0.0 30.17842 6 ACGCAGA 20900 0.0 26.432148 7 CGCAGAG 21285 0.0 25.974566 8 TGGTATC 3645 0.0 23.247559 2 GTGGTAT 3865 0.0 22.715366 1 CTTATAC 5075 0.0 22.46351 1 GCAGAGT 25015 0.0 21.979279 9 AGAGTAC 22235 0.0 19.974321 10-11 GAGTACT 14835 0.0 19.840864 12-13 TACATGG 17950 0.0 19.49132 2 GTACATG 18205 0.0 19.338266 1 CAGAGTA 24190 0.0 19.064098 10-11 TATACAC 7575 0.0 18.909473 3 ACATGGG 18120 0.0 18.70216 3 >>END_MODULE