##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140131_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5710751 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.840004755941905 18.0 18.0 30.0 18.0 33.0 2 30.03712716593667 31.0 27.0 33.0 27.0 33.0 3 31.312745206366028 33.0 31.0 33.0 29.0 33.0 4 32.44330456712261 33.0 33.0 33.0 31.0 34.0 5 33.039356995253335 33.0 33.0 34.0 33.0 34.0 6 37.01362447776133 38.0 38.0 38.0 35.0 38.0 7 37.159658335654974 38.0 38.0 38.0 36.0 38.0 8 37.13070382511862 38.0 38.0 38.0 36.0 38.0 9 37.36142601909977 38.0 38.0 38.0 37.0 38.0 10-11 37.37842553457505 38.0 38.0 38.0 37.0 38.0 12-13 37.43473923132001 38.0 38.0 38.0 37.0 38.0 14-15 37.40164699879228 38.0 38.0 38.0 37.0 38.0 16-17 37.417112477850985 38.0 38.0 38.0 37.0 38.0 18-19 37.454352063327576 38.0 38.0 38.0 37.0 38.0 20-21 37.469647577352276 38.0 38.0 38.0 37.0 38.0 22-23 37.48995275180056 38.0 38.0 38.0 37.0 38.0 24-25 37.50001334613164 38.0 38.0 38.0 37.0 38.0 26-27 37.470238362111616 38.0 38.0 38.0 37.0 38.0 28-29 37.44633343544416 38.0 38.0 38.0 37.0 38.0 30-31 37.4448778333625 38.0 38.0 38.0 37.0 38.0 32-33 37.4332896267549 38.0 38.0 38.0 37.0 38.0 34-35 37.4016791124732 38.0 38.0 38.0 37.0 38.0 36-37 37.374743176818086 38.0 38.0 38.0 37.0 38.0 38-39 37.34726600689686 38.0 38.0 38.0 37.0 38.0 40-41 37.356580366164295 38.0 38.0 38.0 37.0 38.0 42-43 37.32479272010326 38.0 38.0 38.0 37.0 38.0 44-45 37.28088986391187 38.0 38.0 38.0 37.0 38.0 46-47 37.24369577431214 38.0 38.0 38.0 37.0 38.0 48-49 37.19482124193275 38.0 38.0 38.0 37.0 38.0 50-51 37.15385943115634 38.0 38.0 38.0 37.0 38.0 52-53 37.111771460020265 38.0 38.0 38.0 36.0 38.0 54-55 37.093072513749405 38.0 38.0 38.0 36.0 38.0 56-57 37.04715149394923 38.0 38.0 38.0 36.0 38.0 58-59 37.01553885820424 38.0 38.0 38.0 36.0 38.0 60-61 37.03398770987201 38.0 38.0 38.0 36.0 38.0 62-63 37.04447131149019 38.0 38.0 38.0 36.0 38.0 64-65 37.050372183300446 38.0 38.0 38.0 36.0 38.0 66-67 37.04021283074148 38.0 38.0 38.0 36.0 38.0 68-69 37.00024063160541 38.0 38.0 38.0 36.0 38.0 70-71 36.99722381078453 38.0 38.0 38.0 36.0 38.0 72-73 37.00821815418538 38.0 38.0 38.0 36.0 38.0 74-75 37.01964320997293 38.0 38.0 38.0 36.0 38.0 76-77 36.99959227314323 38.0 38.0 38.0 36.0 38.0 78-79 36.95655749719556 38.0 38.0 38.0 36.0 38.0 80-81 36.90827535952421 38.0 38.0 38.0 35.5 38.0 82-83 36.865688178500136 38.0 38.0 38.0 35.0 38.0 84-85 36.83744413962138 38.0 38.0 38.0 35.0 38.0 86-87 36.85547427180359 38.0 38.0 38.0 35.0 38.0 88-89 36.81060339895326 38.0 38.0 38.0 35.0 38.0 90-91 36.82022898554949 38.0 38.0 38.0 35.0 38.0 92-93 36.80676469456791 38.0 38.0 38.0 35.0 38.0 94-95 36.82131099900997 38.0 38.0 38.0 35.0 38.0 96-97 36.81737202197398 38.0 38.0 38.0 35.0 38.0 98-99 36.796626133106145 38.0 38.0 38.0 35.0 38.0 100 35.175834002268004 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 8.0 19 5.0 20 27.0 21 90.0 22 336.0 23 1031.0 24 2216.0 25 4819.0 26 8584.0 27 14502.0 28 23516.0 29 34628.0 30 46210.0 31 60062.0 32 77878.0 33 104879.0 34 157611.0 35 289846.0 36 913934.0 37 3970568.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.213029774893 19.609382373701813 17.055935375224728 23.121652476180454 2 14.374726262528442 20.79916193647732 42.315640822813904 22.510470978180333 3 18.197154518881007 25.655979024781207 30.93988361226104 25.206982844076748 4 12.468434260522482 18.099249111448838 38.653118067291565 30.779198560737115 5 13.41051290802208 37.175933603128556 35.783192088045865 13.630361400803501 6 29.94385502011907 37.76767714088742 18.694914206555318 13.593553632438185 7 26.484292521246328 32.55228603033121 22.844613606861863 18.118807841560596 8 24.073366182486332 37.0491026486709 21.186162730611088 17.69136843823168 9 25.075598638427763 17.354670165097374 21.36741735018739 36.20231384628747 10-11 24.125697303209332 26.846136348791955 28.84945430119436 20.17871204680435 12-13 25.01649958122846 24.16099038462717 29.072629852010706 21.749880182133662 14-15 22.03249625136869 25.65783379453946 26.771417629660267 25.53825232443159 16-17 21.679652991349123 28.887584137357763 27.424291481102927 22.008471390190188 18-19 21.619205600104085 27.792710625975463 29.315811528116004 21.272272245804448 20-21 22.354230913831298 26.97150766115426 29.306303105419957 21.36795831959449 22-23 22.044819349686893 27.01158221375436 29.215661380479403 21.727937056079348 24-25 21.87197604963449 27.143263062174018 29.365913372564695 21.6188475156268 26-27 21.896625767300964 27.291429348062152 29.26848598086319 21.5434589037737 28-29 21.714025188193187 27.165373504571473 29.450171068790148 21.670430238445192 30-31 22.151608665901623 27.0773095881531 29.216544204359913 21.55453754158537 32-33 21.868793330675327 27.125874885043196 29.241562835112422 21.76376894916906 34-35 21.843750978077352 27.286063492297934 29.36344703823232 21.50673849139239 36-37 22.00957515621422 27.141641686554674 29.176635645666334 21.67214751156478 38-39 21.689984267909093 27.214269449822844 29.371522570289315 21.724223711978752 40-41 22.014132315609388 27.053796561999377 29.223298657970474 21.708772464420758 42-43 21.999876938453777 27.096330667267743 29.09633084587667 21.807461548401815 44-45 21.961649211262525 27.32506046054822 28.913249429925443 21.800040898263816 46-47 22.09976759860785 27.19260836093505 28.57003753411319 22.13758650634391 48-49 22.003923460656154 27.26225284928813 28.640889560499584 22.09293412955613 50-51 21.941519145715162 27.432351757577777 28.610876575239054 22.01525252146801 52-53 22.073503560504058 27.415406759498584 28.605948433202233 21.905141246795125 54-55 22.049163363828225 27.344462283875824 28.485066486663786 22.121307865632165 56-57 22.187845242005313 27.553195261413517 28.26957242244185 21.989387074139323 58-59 21.951177808569668 27.713912634438024 28.541460588411528 21.79344896858078 60-61 22.11650935513953 27.88153778602171 28.260354572966513 21.741598285872243 62-63 21.901541154823143 28.025726756792444 28.258132412863112 21.814599675521297 64-65 21.897640365894055 27.95772112491185 28.267564223457892 21.8770742857362 66-67 21.969971157865352 27.918695263648974 28.192606607435692 21.91872697104998 68-69 21.94208211672887 27.805164587148486 28.331486845260006 21.92126645086264 70-71 21.98669208543029 27.41794839846522 28.36308513923274 22.23227437687175 72-73 22.101854722245324 27.317915318779267 28.453951099195624 22.126278859779784 74-75 21.98730614819148 27.55114801547876 28.379711217829755 22.0818346185 76-77 22.107731448723236 27.48052239042903 28.21208415629651 22.19966200455123 78-79 22.082258471839683 27.492675710530534 28.20087055111377 22.224195266516013 80-81 22.143444980055587 27.493885346280223 28.18845072521584 22.174218948448356 82-83 22.172096398648637 27.54125563733724 28.23602946966283 22.050618494351287 84-85 22.33337496191613 27.470139524202065 28.11970257076056 22.07678294312125 86-87 22.10880162656096 27.513513285025432 28.213414266858717 22.16427082155489 88-89 22.250014134795816 27.549719811009783 28.084164441547554 22.116101612646855 90-91 22.223865766684224 27.55548928707674 28.144482712815094 22.07616223342394 92-93 22.23858567530041 27.590098656277924 28.07999018845757 22.09132547996409 94-95 22.131445432192002 27.68950753020213 28.06635027417591 22.112696763429955 96-97 22.239474727993947 27.750807480901834 28.136103106600874 21.873614684503345 98-99 23.251704933960298 29.700654338226634 28.39532981750174 18.65231091031133 100 22.238472025789026 30.541008880904148 22.321700240816483 24.898818852490347 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1256.0 1 1117.0 2 1301.0 3 1739.0 4 2222.5 5 3071.0 6 3895.5 7 5410.0 8 7015.5 9 7583.0 10 7479.0 11 7409.5 12 8128.0 13 10039.5 14 14093.5 15 18887.0 16 22181.5 17 23590.5 18 23089.0 19 21379.0 20 19228.0 21 17602.0 22 17711.0 23 20340.5 24 25511.0 25 32809.5 26 43223.0 27 55112.5 28 66206.5 29 78470.5 30 90909.0 31 103617.5 32 117528.0 33 130598.5 34 144173.0 35 157573.5 36 171591.5 37 184133.5 38 192268.0 39 199799.0 40 209614.0 41 217572.0 42 223176.5 43 233116.5 44 242458.0 45 246439.0 46 244878.5 47 240238.0 48 235875.5 49 230018.5 50 223257.0 51 215443.5 52 205521.5 53 194015.0 54 181151.5 55 167524.0 56 153357.5 57 137903.0 58 121928.0 59 105661.5 60 88416.0 61 71332.5 62 55662.5 63 42342.0 64 31729.5 65 23364.5 66 17065.0 67 12864.5 68 9733.5 69 7052.5 70 5050.0 71 3620.0 72 2581.0 73 1703.0 74 1100.5 75 725.0 76 458.5 77 269.5 78 142.5 79 84.5 80 55.5 81 37.5 82 25.5 83 20.0 84 13.0 85 7.5 86 5.0 87 4.0 88 3.5 89 2.5 90 2.0 91 2.0 92 1.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007774809302664395 3 2.1012998115309178E-4 4 8.755415881378824E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.75116597008203E-5 24-25 7.880707799641585E-5 26-27 5.954822513012162E-4 28-29 0.0013576703777783518 30-31 5.959982747602881E-4 32-33 7.284164927535723E-4 34-35 0.0010198275577099315 36-37 0.0 38-39 1.7699345292367962E-4 40-41 9.422403132362364E-4 42-43 3.840077044448088E-4 44-45 0.0 46-47 0.0 48-49 0.0016112328234160738 50-51 0.0034625731113610233 52-53 0.0 54-55 0.003892537421881639 56-57 0.03609741264566053 58-59 0.0529209182511721 60-61 0.027984719208796353 62-63 0.006873350146068211 64-65 0.0 66-67 0.0 68-69 4.8771452001234114E-5 70-71 0.0029351211175759288 72-73 0.007769356167083138 74-75 0.0056356891951503795 76-77 0.006430276491778649 78-79 0.009392893730268932 80-81 0.009972241355409757 82-83 0.038670153764743 84-85 0.022970766374107998 86-87 0.0010461788634038075 88-89 0.001536135343764688 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 30.0 20-21 160.0 22-23 344.0 24-25 393.0 26-27 1033.0 28-29 2451.0 30-31 6975.0 32-33 9270.0 34-35 13131.0 36-37 20814.0 38-39 25133.0 40-41 25258.0 42-43 29538.0 44-45 36292.0 46-47 38134.0 48-49 35260.0 50-51 32177.0 52-53 31241.0 54-55 33847.0 56-57 35347.0 58-59 36097.0 60-61 36702.0 62-63 36420.0 64-65 41557.0 66-67 45286.0 68-69 47434.0 70-71 53665.0 72-73 40888.0 74-75 40138.0 76-77 42146.0 78-79 44010.0 80-81 43944.0 82-83 41735.0 84-85 41660.0 86-87 43800.0 88-89 45639.0 90-91 46673.0 92-93 46574.0 94-95 54772.0 96-97 180413.0 98-99 400220.0 100-101 3924150.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.09848389085417 #Duplication Level Percentage of deduplicated Percentage of total 1 90.80012456523949 79.08553186733064 2 6.671056701836804 11.620778493598152 3 1.500576064054816 3.9209370042623926 4 0.48675741175402515 1.6958333034564732 5 0.21965115308446442 0.9565641209267383 6 0.11760051348919835 0.6145695857817072 7 0.06044996140364219 0.368556999266252 8 0.03955538600439375 0.27561713205601657 9 0.023271733965745573 0.1824239471334961 >10 0.07879668127331761 1.0228818731009215 >50 0.0014672096267150413 0.08905537199120885 >100 6.334924615946904E-4 0.11611310446389828 >500 2.9562902887126188E-5 0.020573323326841156 >1k 2.9562902865304285E-5 0.030563873305299624 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.5021663525515296E-5 0.0 0.0 0.0 3 0.0 3.5021663525515296E-5 0.0 0.0 0.0 4 0.0 3.5021663525515296E-5 0.0 0.0 0.0 5 0.0 5.2532495288272944E-5 0.0 0.0 0.0 6 0.0 5.2532495288272944E-5 0.0 0.0 0.0 7 0.0 5.2532495288272944E-5 0.0 0.0 0.0 8 0.0 5.2532495288272944E-5 0.0 0.0 0.0 9 0.0 1.0506499057654589E-4 0.0 3.5021663525515296E-5 0.0 10-11 0.0 1.0506499057654589E-4 0.0 3.5021663525515296E-5 0.0 12-13 0.0 1.0506499057654589E-4 0.0 3.5021663525515296E-5 0.0 14-15 0.0 2.4515164467860703E-4 0.0 3.5021663525515296E-5 8.755415881378824E-6 16-17 0.0 2.626624764413647E-4 0.0 3.5021663525515296E-5 1.7510831762757648E-5 18-19 0.0 2.626624764413647E-4 0.0 5.2532495288272944E-5 4.377707940689412E-5 20-21 0.0 2.626624764413647E-4 0.0 5.2532495288272944E-5 8.755415881378823E-5 22-23 0.0 3.327058034923953E-4 0.0 5.2532495288272944E-5 1.0506499057654589E-4 24-25 0.0 3.589720511365318E-4 0.0 7.004332705103059E-5 1.2257582233930354E-4 26-27 0.0 3.677274670179106E-4 0.0 7.879874293240941E-5 1.2257582233930354E-4 28-29 0.0 3.677274670179106E-4 0.0 2.1888539703447058E-4 1.2257582233930354E-4 30-31 0.0 4.5528162583169884E-4 0.0 8.580307563751247E-4 1.3133123822068238E-4 32-33 0.0 4.5528162583169884E-4 0.0 0.002048767316242645 1.4008665410206118E-4 34-35 0.0 5.078141211199718E-4 0.0 0.003537188016077045 1.5759748586481883E-4 36-37 0.0 5.691020322896236E-4 0.0 0.005542178252912795 1.5759748586481883E-4 38-39 0.0 5.778574481710024E-4 0.0 0.008781682129022961 1.5759748586481883E-4 40-41 0.0 6.479007752220329E-4 0.0 0.012248826818048975 1.5759748586481883E-4 42-43 0.0 6.566561911034118E-4 0.0 0.015672194427668096 1.5759748586481883E-4 44-45 0.0 7.617211816799577E-4 0.0 0.01969968573310235 1.5759748586481883E-4 46-47 0.0 8.755415881378824E-4 0.0 0.024471387388453815 1.7510831762757647E-4 48-49 0.0 8.755415881378824E-4 0.0 0.02879656283385495 1.9261914939033414E-4 50-51 0.0 9.981174104771858E-4 0.0 0.03333186826040918 1.9261914939033414E-4 52-53 0.0 0.0010156282422399436 0.0 0.03761326662640343 1.9261914939033414E-4 54-55 0.0 0.0010331390740027013 0.0 0.04222737079589007 1.9261914939033414E-4 56-57 0.0 0.0010681607375282165 0.0 0.04675392080656292 2.0137456527171294E-4 58-59 0.0 0.0010681607375282165 0.0 0.05184957284952539 2.1012998115309178E-4 60-61 0.0 0.0010681607375282165 0.0 0.05746179442948922 2.1012998115309178E-4 62-63 1.7510831762757648E-5 0.0010856715692909742 0.0 0.06186576861782277 2.2764081291584942E-4 64-65 1.7510831762757648E-5 0.0012257582233930354 0.0 0.06678631234315767 2.3639622879722825E-4 66-67 3.5021663525515296E-5 0.0012257582233930354 0.0 0.07205707270374773 2.451516446786071E-4 68-69 3.5021663525515296E-5 0.0012695353027999295 0.0 0.07666242145735298 2.451516446786071E-4 70-71 3.5021663525515296E-5 0.0012958015504440658 0.0 0.08067240193102448 2.451516446786071E-4 72-73 3.5021663525515296E-5 0.0012958015504440658 0.0 0.08385937331184637 2.626624764413647E-4 74-75 3.5021663525515296E-5 0.0013133123822068236 0.0 0.08645973182861588 2.626624764413647E-4 76-77 3.5021663525515296E-5 0.0013658448774950965 0.0 0.08917391075184333 2.626624764413647E-4 78-79 3.5021663525515296E-5 0.0014008665410206117 0.0 0.09110885766162805 2.626624764413647E-4 80-81 3.5021663525515296E-5 0.0014008665410206117 0.0 0.09185306801154525 2.714178923227435E-4 82-83 3.5021663525515296E-5 0.0014008665410206117 0.0 0.09229959422149556 2.9768413996688004E-4 84-85 3.5021663525515296E-5 0.0014008665410206117 0.0 0.09254474586617417 2.9768413996688004E-4 86-87 3.5021663525515296E-5 0.0014183773727833695 0.0 0.09259727836146245 2.9768413996688004E-4 88 3.5021663525515296E-5 0.0014884206998344001 0.0 0.09259727836146245 3.1519497172963765E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6940 0.0 49.904022 1 GTATCAA 12865 0.0 38.03341 1 ATCAACG 15405 0.0 32.240532 3 TCAACGC 15515 0.0 32.011948 4 CAACGCA 15890 0.0 31.256477 5 TATCAAC 16345 0.0 30.653572 2 AACGCAG 16415 0.0 30.283272 6 CTTATAC 4565 0.0 29.794783 1 ACGCAGA 18970 0.0 26.158718 7 CGCAGAG 19180 0.0 25.894962 8 TATACAC 6955 0.0 23.491371 3 TGGTATC 3295 0.0 22.155958 2 GTGGTAT 3390 0.0 21.79144 1 GCAGAGT 22880 0.0 21.612446 9 TTATACA 7470 0.0 20.88385 2 GAGTACT 14275 0.0 20.501194 12-13 TACATGG 15180 0.0 20.23878 2 GTACATG 15390 0.0 19.623789 1 ACATGGG 15545 0.0 19.427267 3 ACATCTC 7535 0.0 19.31876 8 >>END_MODULE