##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140130_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5591602 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.685682743514292 18.0 18.0 30.0 18.0 33.0 2 29.978823600106015 31.0 27.0 33.0 27.0 33.0 3 31.256930482534344 33.0 31.0 33.0 29.0 33.0 4 32.415531362926046 33.0 33.0 33.0 31.0 34.0 5 33.0204066741517 33.0 33.0 34.0 33.0 34.0 6 36.99714625611766 38.0 37.0 38.0 35.0 38.0 7 37.125544343105965 38.0 38.0 38.0 36.0 38.0 8 37.092738538973265 38.0 38.0 38.0 36.0 38.0 9 37.33973984557556 38.0 38.0 38.0 37.0 38.0 10-11 37.36072005840187 38.0 38.0 38.0 37.0 38.0 12-13 37.41712884786864 38.0 38.0 38.0 37.0 38.0 14-15 37.37877579627448 38.0 38.0 38.0 37.0 38.0 16-17 37.39175141578389 38.0 38.0 38.0 37.0 38.0 18-19 37.438538722891934 38.0 38.0 38.0 37.0 38.0 20-21 37.45521055399363 38.0 38.0 38.0 37.0 38.0 22-23 37.479501578647906 38.0 38.0 38.0 37.0 38.0 24-25 37.49151559082813 38.0 38.0 38.0 37.0 38.0 26-27 37.46061675577796 38.0 38.0 38.0 37.0 38.0 28-29 37.436505434738166 38.0 38.0 38.0 37.0 38.0 30-31 37.43694078420792 38.0 38.0 38.0 37.0 38.0 32-33 37.42294036434289 38.0 38.0 38.0 37.0 38.0 34-35 37.392689050961074 38.0 38.0 38.0 37.0 38.0 36-37 37.3647304388899 38.0 38.0 38.0 37.0 38.0 38-39 37.33754115390926 38.0 38.0 38.0 37.0 38.0 40-41 37.34349216073838 38.0 38.0 38.0 37.0 38.0 42-43 37.3108767985876 38.0 38.0 38.0 37.0 38.0 44-45 37.26564608451583 38.0 38.0 38.0 37.0 38.0 46-47 37.22842638072305 38.0 38.0 38.0 37.0 38.0 48-49 37.1785042485862 38.0 38.0 38.0 37.0 38.0 50-51 37.13327757990283 38.0 38.0 38.0 36.5 38.0 52-53 37.088925675956716 38.0 38.0 38.0 36.0 38.0 54-55 37.06494204649718 38.0 38.0 38.0 36.0 38.0 56-57 37.018830598433524 38.0 38.0 38.0 36.0 38.0 58-59 36.982639810505205 38.0 38.0 38.0 36.0 38.0 60-61 37.00012853201582 38.0 38.0 38.0 36.0 38.0 62-63 37.00920463294272 38.0 38.0 38.0 36.0 38.0 64-65 37.01426267053901 38.0 38.0 38.0 36.0 38.0 66-67 37.003996546346656 38.0 38.0 38.0 36.0 38.0 68-69 36.963666451686734 38.0 38.0 38.0 36.0 38.0 70-71 36.958111476999704 38.0 38.0 38.0 36.0 38.0 72-73 36.967152126051545 38.0 38.0 38.0 36.0 38.0 74-75 36.97827867132405 38.0 38.0 38.0 36.0 38.0 76-77 36.95708876788561 38.0 38.0 38.0 36.0 38.0 78-79 36.91445090474347 38.0 38.0 38.0 35.0 38.0 80-81 36.86563399320212 38.0 38.0 38.0 35.0 38.0 82-83 36.820816354389535 38.0 38.0 38.0 35.0 38.0 84-85 36.78692682734938 38.0 38.0 38.0 35.0 38.0 86-87 36.80746095820969 38.0 38.0 38.0 35.0 38.0 88-89 36.761646922654094 38.0 38.0 38.0 35.0 38.0 90-91 36.769624925933535 38.0 38.0 38.0 35.0 38.0 92-93 36.75882148606013 38.0 38.0 38.0 35.0 38.0 94-95 36.76816868634636 38.0 38.0 38.0 35.0 38.0 96-97 36.76355014436359 38.0 38.0 38.0 35.0 38.0 98-99 36.740061332484856 38.0 38.0 38.0 34.0 38.0 100 35.0649156006318 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 5.0 19 10.0 20 23.0 21 78.0 22 348.0 23 927.0 24 2349.0 25 4819.0 26 8519.0 27 14646.0 28 23239.0 29 34295.0 30 46214.0 31 60304.0 32 78147.0 33 105624.0 34 160344.0 35 296213.0 36 951797.0 37 3803700.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.1605836753045 19.66177134924839 17.182034772861158 22.99561020258595 2 14.375408677337706 20.930056617460842 42.19567578240695 22.4988589227945 3 18.148542589368507 25.7889564605448 30.995395768112676 25.067105181974014 4 12.497008885889132 18.210725375127737 38.53282857276732 30.759437166215807 5 13.382193510911542 37.21829629505104 35.76769233575637 13.631817858281043 6 29.89874815839897 37.75996574863519 18.731054177318057 13.61023191564779 7 26.390469135678828 32.628162734042945 22.859960347678538 18.12140778259969 8 24.093721262707895 37.01965912452281 21.165490676911556 17.721128935857738 9 25.13914616955928 17.288784144508142 21.34846149636544 36.223608189567145 10-11 24.113474099193756 26.82274239117877 28.841412532580108 20.222370977047365 12-13 24.98132020125896 24.23885855967574 29.05084267442497 21.72897856464033 14-15 22.035652752109325 25.696329960537252 26.748202035838748 25.519815251514682 16-17 21.620324550996298 28.96290723123713 27.39819464976227 22.018573568004303 18-19 21.619573424574927 27.81699233958354 29.368095225661627 21.195339010179907 20-21 22.320328933196375 26.93882292155967 29.347957594079116 21.392890551164836 22-23 22.021248873912345 27.01368260218938 29.252676632337497 21.712391891560774 24-25 21.881698976170625 27.109567682900327 29.374142463976554 21.63459087695249 26-27 21.809784852034063 27.242162543619685 29.327285273528915 21.620767330817333 28-29 21.57031451650061 27.140739971987905 29.507426425756094 21.781519085755388 30-31 21.964884892542376 26.953895417154182 29.228951403132346 21.85226828717109 32-33 21.89105901485639 27.080751546202798 29.378041427438497 21.65014801150232 34-35 21.95427190353609 27.30476415281252 29.28189300614895 21.459070937502442 36-37 21.797997190139316 27.187907720916016 29.21925241266233 21.794842676282347 38-39 21.688676017294316 27.188715358780318 29.394554902922504 21.72805372100286 40-41 21.966482511140565 27.02825219705688 29.29387936561675 21.711385926185805 42-43 21.97787568961774 27.08167139945179 29.149643995807057 21.790808915123414 44-45 21.910496081925526 27.31110587839635 29.01428699958827 21.76411104008985 46-47 22.113465200268735 27.179098632953867 28.625159142283408 22.082277024493994 48-49 22.003941488982225 27.27939737500237 28.631223186509736 22.085437949505668 50-51 21.89560735778048 27.446346182187327 28.66197988838179 21.996066571650406 52-53 22.071001845291967 27.42516368577639 28.69556966896592 21.808264799965727 54-55 21.99286462589 27.36992980562122 28.53886282682686 22.09834274166192 56-57 22.153046380983422 27.62530249407991 28.314561154039552 21.90708997089711 58-59 21.900656774677106 27.81452577705935 28.544130088434184 21.740687359829355 60-61 22.07141343411895 28.02644080099419 28.251980439109715 21.650165325777145 62-63 21.87679164965486 28.175283912384007 28.235006797019008 21.712917640942123 64-65 21.867199300184907 28.08496797338736 28.28646023548968 21.76137249093805 66-67 21.946122692022605 27.976909296397224 28.25371801965863 21.823249991921536 68-69 21.927085317614107 27.887441168864623 28.344417346783374 21.841056166737893 70-71 21.941347415946108 27.492045332665977 28.407309611485367 22.159297639902555 72-73 22.046513971621422 27.370822288178786 28.556398644925785 22.02626509527401 74-75 21.986442774320736 27.55611776396072 28.42547405350466 22.031965408213882 76-77 22.08463331054137 27.50289943385776 28.28424655123153 22.12822070436934 78-79 22.032176179417892 27.54653475996755 28.256266294870198 22.165022765744357 80-81 22.09481870751815 27.555696711675353 28.24225103782776 22.107233542978737 82-83 22.10134881266902 27.56842321973918 28.30867608817172 22.021551879420084 84-85 22.245493063690464 27.515974746090787 28.204878506774733 22.033653683444015 86-87 22.073594514540176 27.550989040120555 28.272249174491492 22.103167270847774 88-89 22.187849243528017 27.537307262640702 28.185810381858694 22.089033111972586 90-91 22.200311896984264 27.576987269435122 28.16889213826871 22.053808695311908 92-93 22.18897897266617 27.60661102557256 28.15438983233812 22.050020169423153 94-95 22.146805289648615 27.69106215347461 28.11601038466235 22.046122172214424 96-97 22.222892449050835 27.76668857024983 28.17238711098583 21.838031869713507 98-99 23.25338966965262 29.703561292592852 28.40918629527111 18.633862742483416 100 22.158894825443703 30.573141810818882 22.359696593458633 24.908266770278782 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1388.0 1 1285.0 2 1441.5 3 1807.0 4 2299.0 5 3218.0 6 4090.5 7 5605.5 8 7370.5 9 7930.0 10 7585.0 11 7358.0 12 8041.0 13 10029.0 14 14155.0 15 19057.5 16 22543.5 17 24118.5 18 23564.0 19 21711.5 20 19620.5 21 18011.5 22 17958.5 23 20394.5 24 25484.0 25 32756.5 26 42401.0 27 53733.5 28 65023.0 29 77621.5 30 89986.0 31 102226.0 32 116628.0 33 130073.5 34 142862.0 35 155240.5 36 168210.0 37 181090.0 38 190494.0 39 198205.0 40 207553.5 41 215998.0 42 220617.0 43 225549.0 44 234091.0 45 246640.5 46 249480.0 47 244646.0 48 240244.5 49 231583.5 50 223619.0 51 214685.5 52 203285.0 53 191020.5 54 177851.5 55 163955.0 56 149153.5 57 133466.5 58 117844.0 59 102295.5 60 85647.0 61 69470.0 62 54977.0 63 42152.0 64 31740.5 65 23413.0 66 17065.5 67 12926.0 68 9672.5 69 7012.0 70 5114.0 71 3675.5 72 2642.0 73 1843.5 74 1245.0 75 813.5 76 517.0 77 314.0 78 199.0 79 124.0 80 76.5 81 51.0 82 37.0 83 26.5 84 15.5 85 9.0 86 7.5 87 5.5 88 3.5 89 2.5 90 1.5 91 1.0 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007046281190971747 3 1.251877368954371E-4 4 7.15358496545355E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 7.154512610454496E-5 26-27 6.70809586673965E-4 28-29 0.0013598787632296298 30-31 7.699915318838274E-4 32-33 7.622005213272225E-4 34-35 0.0010153349724853207 36-37 0.0 38-39 2.263601665503779E-4 40-41 8.736731430418624E-4 42-43 3.476725382153877E-4 44-45 0.0 46-47 0.0 48-49 0.0018139085081378575 50-51 0.003606532739689883 52-53 0.0 54-55 0.0036258576703921716 56-57 0.03633895896811581 58-59 0.053026951945728915 60-61 0.02800768093571808 62-63 0.006392851336602604 64-65 0.0 66-67 0.0 68-69 6.063368874443699E-5 70-71 0.0033809385138027586 72-73 0.007299801397906805 74-75 0.005259144611063866 76-77 0.006672166913869575 78-79 0.009631324972254253 80-81 0.010667693735653907 82-83 0.03968797680318862 84-85 0.023564906473298366 86-87 0.001167911906828836 88-89 0.0016135256626249148 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 42.0 20-21 205.0 22-23 382.0 24-25 504.0 26-27 1153.0 28-29 2942.0 30-31 8131.0 32-33 10328.0 34-35 14810.0 36-37 23851.0 38-39 28342.0 40-41 28244.0 42-43 33294.0 44-45 40543.0 46-47 41250.0 48-49 38748.0 50-51 35390.0 52-53 34263.0 54-55 37222.0 56-57 38731.0 58-59 39304.0 60-61 40283.0 62-63 39656.0 64-65 44434.0 66-67 49242.0 68-69 50146.0 70-71 56759.0 72-73 42078.0 74-75 41977.0 76-77 44217.0 78-79 45334.0 80-81 45373.0 82-83 42931.0 84-85 42615.0 86-87 44136.0 88-89 46268.0 90-91 46614.0 92-93 46523.0 94-95 54865.0 96-97 173602.0 98-99 384413.0 100-101 3752457.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.74554978174349 #Duplication Level Percentage of deduplicated Percentage of total 1 91.16886936884194 79.9966256574899 2 6.500695314580722 11.408141686829788 3 1.3743300768126212 3.617740445145276 4 0.46876380197583567 1.6452775008860012 5 0.2012571021460762 0.882970753764398 6 0.10494693859637474 0.5525176095029868 7 0.05899701998569438 0.36237081678904837 8 0.03341265345618488 0.23454493177438515 9 0.020888470710513463 0.1649583311934465 >10 0.06572137638010313 0.8832573994306963 >50 0.0011852596079794295 0.06904308884091336 >100 8.737925291178353E-4 0.1471949761615205 >500 5.8824376844150765E-5 0.03535680219161369 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.365188724090162E-5 0.0 0.0 0.0 3 0.0 7.15358496545355E-5 0.0 0.0 0.0 4 0.0 1.0730377448180325E-4 0.0 0.0 0.0 5 0.0 1.0730377448180325E-4 0.0 1.7883962413633876E-5 0.0 6 7.15358496545355E-5 1.0730377448180325E-4 0.0 1.7883962413633876E-5 1.7883962413633876E-5 7 7.15358496545355E-5 1.0730377448180325E-4 0.0 1.7883962413633876E-5 1.7883962413633876E-5 8 7.15358496545355E-5 1.0730377448180325E-4 0.0 1.7883962413633876E-5 1.7883962413633876E-5 9 7.15358496545355E-5 1.6095566172270488E-4 0.0 3.576792482726775E-5 1.7883962413633876E-5 10-11 7.15358496545355E-5 1.6095566172270488E-4 0.0 3.576792482726775E-5 1.7883962413633876E-5 12-13 8.047783086135244E-5 1.6095566172270488E-4 0.0 3.576792482726775E-5 1.7883962413633876E-5 14-15 8.941981206816937E-5 2.2354953017042343E-4 0.0 4.470990603408469E-5 3.576792482726775E-5 16-17 1.2518773689543713E-4 2.414334925840573E-4 0.0 5.365188724090162E-5 5.365188724090162E-5 18-19 1.43071699309071E-4 2.86143398618142E-4 0.0 5.365188724090162E-5 5.365188724090162E-5 20-21 1.43071699309071E-4 3.040273610317759E-4 0.0 6.259386844771857E-5 5.365188724090162E-5 22-23 1.43071699309071E-4 3.397952858590436E-4 0.0 8.047783086135244E-5 6.259386844771857E-5 24-25 1.43071699309071E-4 3.6662122947949446E-4 0.0 1.0730377448180325E-4 7.15358496545355E-5 26-27 1.43071699309071E-4 3.7556321068631137E-4 0.0 1.43071699309071E-4 7.15358496545355E-5 28-29 1.43071699309071E-4 3.9344717309994524E-4 0.0 3.3085330465222666E-4 7.15358496545355E-5 30-31 1.43071699309071E-4 5.007509475817485E-4 0.0 8.67372177061243E-4 7.15358496545355E-5 32-33 1.43071699309071E-4 5.007509475817485E-4 0.0 0.0023606830385996718 7.15358496545355E-5 34-35 1.6095566172270488E-4 6.348806656840025E-4 0.0 0.004104369373928975 7.15358496545355E-5 36-37 1.698976429295218E-4 7.779523649930735E-4 0.0 0.0066170660930445335 7.15358496545355E-5 38-39 1.7883962413633875E-4 7.958363274067074E-4 0.0 0.01022068451939176 7.15358496545355E-5 40-41 1.7883962413633875E-4 8.941981206816937E-4 0.0 0.014486009555043438 7.15358496545355E-5 42-43 1.7883962413633875E-4 9.031401018885106E-4 0.0 0.018903348271211005 8.047783086135244E-5 44-45 1.8778160534315568E-4 0.001010443876370314 0.0 0.02306136953238088 8.941981206816937E-5 46-47 1.9672358654997262E-4 0.0011088056696453002 0.0 0.027898981365268846 8.941981206816937E-5 48-49 1.9672358654997262E-4 0.001126689632058934 0.0 0.03295120074712041 1.0730377448180325E-4 50-51 2.146075489636065E-4 0.001296587274988456 0.0 0.03834321541483103 1.0730377448180325E-4 52-53 2.146075489636065E-4 0.0013055292561952728 0.0 0.04373523008254164 1.0730377448180325E-4 54-55 2.146075489636065E-4 0.0013055292561952728 0.0 0.04941338814887039 1.0730377448180325E-4 56-57 2.146075489636065E-4 0.0013055292561952728 0.0 0.0555922971627809 1.0730377448180325E-4 58-59 2.146075489636065E-4 0.0013144712374020897 0.0 0.06165496042100278 1.162457556886202E-4 60-61 2.146075489636065E-4 0.0013681231246429914 0.0 0.06700226518267932 1.2518773689543713E-4 62-63 2.5037547379087426E-4 0.001412833030677076 0.0 0.07302021853486712 1.2518773689543713E-4 64-65 2.5037547379087426E-4 0.0016453245420543165 0.0 0.07843011716499135 1.2518773689543713E-4 66-67 2.5037547379087426E-4 0.0016632085044679503 0.0 0.08403673938166559 1.3412971810225407E-4 68-69 2.5037547379087426E-4 0.0016989764292952181 0.0 0.08951817386144437 1.43071699309071E-4 70-71 2.7720141741132505E-4 0.0017258023729156689 0.0 0.09436472767553913 1.6095566172270488E-4 72-73 3.040273610317759E-4 0.0017347443541224858 0.0 0.09791469421464546 1.7883962413633875E-4 74-75 3.040273610317759E-4 0.0017436863353293029 0.0 0.10105332961823821 1.7883962413633875E-4 76-77 3.040273610317759E-4 0.0018062802037770213 0.0 0.10387005369838555 1.7883962413633875E-4 78-79 3.040273610317759E-4 0.0018241641661906553 0.0 0.10583728956388527 1.7883962413633875E-4 80-81 3.040273610317759E-4 0.0018331061473974722 0.0 0.10632015654905339 1.8778160534315568E-4 82-83 3.040273610317759E-4 0.001842048128604289 0.0 0.10684773344025558 1.9672358654997262E-4 84-85 3.040273610317759E-4 0.001850990109811106 0.0 0.10712493485766691 1.9672358654997262E-4 86-87 3.040273610317759E-4 0.0018957000158451908 0.0 0.10724118061335552 1.9672358654997262E-4 88 3.040273610317759E-4 0.00198511982791336 0.0 0.10726800655697598 1.9672358654997262E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7920 0.0 44.44992 1 GTATCAA 13990 0.0 35.438683 1 CTTATAC 4470 0.0 34.27562 1 TCAACGC 16745 0.0 30.14403 4 ATCAACG 16770 0.0 30.124752 3 CAACGCA 17060 0.0 29.586914 5 AACGCAG 17620 0.0 28.719845 6 TATCAAC 17935 0.0 28.411434 2 TATACAC 7030 0.0 25.46399 3 ACGCAGA 20295 0.0 24.9132 7 CGCAGAG 20470 0.0 24.700214 8 TTATACA 7225 0.0 23.05239 2 GCAGAGT 24145 0.0 20.869421 9 GTGGTAT 4235 0.0 20.222857 1 GAGTACT 14645 0.0 19.833305 12-13 TGGTATC 4145 0.0 19.831324 2 ACACATC 8340 0.0 19.348438 6 AGAGTAC 21320 0.0 19.295294 10-11 ACATCTC 8495 0.0 18.995405 8 TACATGG 15230 0.0 18.622086 2 >>END_MODULE