##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140127_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5681334 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.56649353831336 18.0 18.0 30.0 18.0 33.0 2 29.927134014652193 31.0 27.0 33.0 27.0 33.0 3 31.211195997278104 33.0 31.0 33.0 29.0 33.0 4 32.40806507767366 33.0 33.0 33.0 31.0 34.0 5 33.016432056274105 33.0 33.0 34.0 33.0 34.0 6 36.99451889292198 38.0 37.0 38.0 35.0 38.0 7 37.12851277534467 38.0 38.0 38.0 36.0 38.0 8 37.095435156602306 38.0 38.0 38.0 36.0 38.0 9 37.34376292610151 38.0 38.0 38.0 37.0 38.0 10-11 37.364446624683566 38.0 38.0 38.0 37.0 38.0 12-13 37.42315044318816 38.0 38.0 38.0 37.0 38.0 14-15 37.385610228161205 38.0 38.0 38.0 37.0 38.0 16-17 37.40173901059153 38.0 38.0 38.0 37.0 38.0 18-19 37.44803491574338 38.0 38.0 38.0 37.0 38.0 20-21 37.46357297524061 38.0 38.0 38.0 37.0 38.0 22-23 37.48507411435064 38.0 38.0 38.0 37.0 38.0 24-25 37.496954668760864 38.0 38.0 38.0 37.0 38.0 26-27 37.46776577460807 38.0 38.0 38.0 37.0 38.0 28-29 37.4429287534987 38.0 38.0 38.0 37.0 38.0 30-31 37.44384432472337 38.0 38.0 38.0 37.0 38.0 32-33 37.43226561401174 38.0 38.0 38.0 37.0 38.0 34-35 37.40389324312255 38.0 38.0 38.0 37.0 38.0 36-37 37.3757528777603 38.0 38.0 38.0 37.0 38.0 38-39 37.3531180619129 38.0 38.0 38.0 37.0 38.0 40-41 37.34948281810805 38.0 38.0 38.0 37.0 38.0 42-43 37.31723558516333 38.0 38.0 38.0 37.0 38.0 44-45 37.27384744873338 38.0 38.0 38.0 37.0 38.0 46-47 37.23496909675833 38.0 38.0 38.0 37.0 38.0 48-49 37.185528846497874 38.0 38.0 38.0 37.0 38.0 50-51 37.13877323508114 38.0 38.0 38.0 36.5 38.0 52-53 37.09624051932729 38.0 38.0 38.0 36.0 38.0 54-55 37.07313330321202 38.0 38.0 38.0 36.0 38.0 56-57 37.02591561148689 38.0 38.0 38.0 36.0 38.0 58-59 36.99515575875084 38.0 38.0 38.0 36.0 38.0 60-61 37.0149145179965 38.0 38.0 38.0 36.0 38.0 62-63 37.02485678132005 38.0 38.0 38.0 36.0 38.0 64-65 37.02938257988135 38.0 38.0 38.0 36.0 38.0 66-67 37.02387059772231 38.0 38.0 38.0 36.0 38.0 68-69 36.98417503910606 38.0 38.0 38.0 36.0 38.0 70-71 36.97770735607084 38.0 38.0 38.0 36.0 38.0 72-73 36.987145911709554 38.0 38.0 38.0 36.0 38.0 74-75 37.00051221376484 38.0 38.0 38.0 36.0 38.0 76-77 36.977046189403204 38.0 38.0 38.0 36.0 38.0 78-79 36.93433279281419 38.0 38.0 38.0 35.5 38.0 80-81 36.88613670868369 38.0 38.0 38.0 35.0 38.0 82-83 36.84038209446591 38.0 38.0 38.0 35.0 38.0 84-85 36.80708313915725 38.0 38.0 38.0 35.0 38.0 86-87 36.82784394448917 38.0 38.0 38.0 35.0 38.0 88-89 36.78011089167242 38.0 38.0 38.0 35.0 38.0 90-91 36.79246023665547 38.0 38.0 38.0 35.0 38.0 92-93 36.77697919886762 38.0 38.0 38.0 35.0 38.0 94-95 36.789785176192936 38.0 38.0 38.0 35.0 38.0 96-97 36.78421715441644 38.0 38.0 38.0 35.0 38.0 98-99 36.76148172803859 38.0 38.0 38.0 34.0 38.0 100 35.10143092873549 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 5.0 20 29.0 21 76.0 22 327.0 23 906.0 24 2249.0 25 4640.0 26 8655.0 27 14498.0 28 22825.0 29 34328.0 30 47069.0 31 60619.0 32 78779.0 33 106199.0 34 160683.0 35 297263.0 36 931336.0 37 3910844.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.37120507261147 19.405882491682412 17.196964656540175 23.02594777916595 2 14.517391889065934 20.93157732791356 42.00791983839249 22.543110944628022 3 18.331021375096785 25.546126427064365 30.900118299743497 25.222733898095356 4 12.691882476422114 17.905164631120783 38.51051444948028 30.892438442976815 5 13.554862291145003 37.082628833298656 35.56217606639567 13.800332809160665 6 30.132676586167968 37.54070786896176 18.68645638506731 13.64015915980296 7 26.674281075536133 32.59259181030371 22.777273788163132 17.95585332599703 8 24.260446578215607 36.92132868794547 21.097826672397716 17.7203980614412 9 25.407078689617613 17.23598718188369 21.287658849136488 36.06927527936221 10-11 24.292243687838102 26.73598313353871 28.718528078088703 20.253245100534485 12-13 25.114893790789278 24.118173654286124 29.054611117741008 21.71232143718359 14-15 22.187394721028546 25.58367453840947 26.73027144681161 25.498659293750375 16-17 21.74141671656692 28.78877566430701 27.41919415404903 22.050613465077042 18-19 21.76140321973677 27.7419704597547 29.364960764496505 21.13166555601202 20-21 22.46272489681888 26.907231338334093 29.329382574888157 21.30066118995887 22-23 22.20049900806547 26.84090964898253 29.214423584428324 21.74416775852368 24-25 22.055884156509016 26.913945179790606 29.30068801854549 21.729482645154892 26-27 21.918698591575083 27.115630203339787 29.272596644581945 21.693074560503188 28-29 21.813448201117463 27.134740678511367 29.32461764688792 21.727193473483254 30-31 22.146697600392937 27.050937586820528 29.171424086553362 21.630940726233174 32-33 22.067326815787037 27.075478377969187 29.12992423530993 21.727270570933847 34-35 22.063135066019935 27.07697660228476 29.15683630606264 21.703052025632672 36-37 21.97916905387588 27.095608381539844 29.18616214712476 21.739060417459516 38-39 21.85563427128611 27.15364011018881 29.25547111999342 21.735254498531663 40-41 22.126694805312216 27.00823646366932 29.086373445080337 21.77869528593812 42-43 22.0733231259708 27.063476991052642 28.963489544606425 21.899710338370134 44-45 22.050238855749168 27.2376139903509 28.834920823725767 21.877226330174164 46-47 22.202653958891286 27.115459681004477 28.536193305648023 22.145693054456213 48-49 22.09052934562561 27.252382595141135 28.534432712067055 22.122655347166205 50-51 22.03472758756545 27.40974467341719 28.511891752814687 22.043635986202673 52-53 22.262180757169396 27.39735599684715 28.368858016597287 21.97160522938617 54-55 22.141199298426184 27.253405331650892 28.414893196793965 22.190502173128955 56-57 22.24377811203024 27.45914085522683 28.248234350731927 22.048846682011003 58-59 22.11271610480678 27.536262750414792 28.353686730862677 21.997334413915752 60-61 22.194014239034143 27.519093942167277 28.363895948714145 21.92299587008443 62-63 22.073938642620192 27.652408116385185 28.314429114519623 21.959224126475 64-65 22.047534020270245 27.543825139273277 28.35936614204086 22.049274698415623 66-67 22.11239344219575 27.58322138404765 28.251477663506797 22.052907510249803 68-69 22.081027464349344 27.520253196461436 28.371780229195174 22.026939109994043 70-71 22.117327123380736 27.13746298297431 28.395944468812985 22.34926542483197 72-73 22.18078713825659 27.164547702140418 28.44239901278686 22.21226614681613 74-75 22.070618688159463 27.439100483645312 28.34269809976903 22.147582728426194 76-77 22.20110358010691 27.367845040348133 28.157371931672152 22.2736794478728 78-79 22.169894212567286 27.417782552894472 28.141637892073216 22.270685342465026 80-81 22.24927134796719 27.430895008553453 28.053017008070828 22.26681663540852 82-83 22.26825381986089 27.42574055675012 28.1179484286141 22.188057194774892 84-85 22.36888038871533 27.368306823178983 28.073446538271273 22.18936624983441 86-87 22.166149044069456 27.464371925216604 28.077855186878313 22.291623843835627 88-89 22.279530976049998 27.440661004012934 28.006519990356015 22.273288029581057 90-91 22.31397134398972 27.435291750178415 28.045895127781996 22.204841778049865 92-93 22.31060847659757 27.4583338916507 27.966286564204264 22.264771067547468 94-95 22.225464692370643 27.57893094892622 27.938173532452776 22.25743082625036 96-97 22.313711215267773 27.63691090206463 28.05338969816807 21.995988184499524 98-99 23.37324715941727 29.5745520282562 28.222068390200427 18.830132422126102 100 22.302431601395373 30.486820313876116 22.21755132203925 24.993196762689262 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1218.0 1 1159.0 2 1376.5 3 1770.5 4 2220.0 5 3013.5 6 3888.0 7 5563.5 8 7274.0 9 7953.5 10 7895.5 11 7654.0 12 8279.5 13 10094.0 14 14002.0 15 18618.5 16 21862.0 17 23338.0 18 22758.5 19 20892.0 20 18618.0 21 16631.0 22 16563.5 23 18932.5 24 23715.5 25 31085.0 26 41143.0 27 52500.5 28 63067.5 29 74454.5 30 86193.0 31 98047.5 32 112012.0 33 125784.5 34 138660.5 35 150819.0 36 164024.5 37 176602.0 38 186042.5 39 193649.0 40 202870.5 41 212178.5 42 218659.5 43 227149.0 44 233815.5 45 236884.5 46 237472.0 47 235394.0 48 233074.0 49 229120.0 50 223346.5 51 216035.5 52 206494.0 53 195407.5 54 183302.5 55 169635.5 56 154532.0 57 139055.0 58 123760.0 59 107201.5 60 89165.5 61 71644.0 62 55470.0 63 42053.5 64 31421.5 65 22821.0 66 16779.0 67 12719.5 68 9514.5 69 6859.5 70 4846.5 71 3434.5 72 2373.0 73 1610.0 74 1061.0 75 630.5 76 367.5 77 217.5 78 135.0 79 82.0 80 48.0 81 31.0 82 22.0 83 15.0 84 9.5 85 7.5 86 6.5 87 4.0 88 2.0 89 1.0 90 1.0 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007216614971061374 3 5.280449978825395E-5 4 0.0010032854959768252 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 9.681838929758961E-5 26-27 5.105386623006809E-4 28-29 0.0011093166398200302 30-31 5.197092693495469E-4 32-33 6.26055807849188E-4 34-35 0.0010684580499086469 36-37 0.0 38-39 2.840184168192156E-4 40-41 8.817929005161249E-4 42-43 3.308261775780144E-4 44-45 0.0 46-47 0.0 48-49 0.0017721242671698168 50-51 0.003535823972612439 52-53 0.0 54-55 0.003728494707014148 56-57 0.03739212524997689 58-59 0.05354272163022323 60-61 0.027952756460200432 62-63 0.006795265089528798 64-65 9.511901528990611E-6 66-67 0.0 68-69 4.8284527976248645E-5 70-71 0.003447402090372185 72-73 0.007414942021537117 74-75 0.005472391044991169 76-77 0.006413316398720369 78-79 0.009504846767788849 80-81 0.010237930935465827 82-83 0.039591130481332136 84-85 0.02410355921310292 86-87 0.001010035904173208 88-89 0.0014398507599942196 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 37.0 20-21 154.0 22-23 329.0 24-25 386.0 26-27 840.0 28-29 2044.0 30-31 5531.0 32-33 7353.0 34-35 10177.0 36-37 16146.0 38-39 19793.0 40-41 20670.0 42-43 24854.0 44-45 31144.0 46-47 32348.0 48-49 30084.0 50-51 27583.0 52-53 26962.0 54-55 29518.0 56-57 31768.0 58-59 32045.0 60-61 32909.0 62-63 33328.0 64-65 36668.0 66-67 40481.0 68-69 42240.0 70-71 45129.0 72-73 38672.0 74-75 38918.0 76-77 41298.0 78-79 43199.0 80-81 43405.0 82-83 41439.0 84-85 41369.0 86-87 43645.0 88-89 46136.0 90-91 46899.0 92-93 47158.0 94-95 56281.0 96-97 183165.0 98-99 409506.0 100-101 3979723.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.75094419789028 #Duplication Level Percentage of deduplicated Percentage of total 1 90.30415388759559 77.43666460852904 2 6.827324481017538 11.708990411852502 3 1.5931319203595233 4.098376992078818 4 0.5718083887722243 1.961324369499702 5 0.27229425352425285 1.16747446696822 6 0.14203624455502395 0.7307845248549453 7 0.08097101350601615 0.48603386025607087 8 0.05768127506764985 0.39569790396713617 9 0.036080816641109764 0.2784567684965503 >10 0.11139596187546084 1.452798757012854 >50 0.0023661492335714383 0.13952677619499915 >100 7.2340908780289E-4 0.11951788374149573 >500 3.21987642741431E-5 0.024352676547685262 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 3.520299985883597E-5 0.0 0.0 0.0 5 0.0 3.520299985883597E-5 0.0 0.0 0.0 6 5.280449978825395E-5 3.520299985883597E-5 0.0 0.0 0.0 7 5.280449978825395E-5 5.280449978825395E-5 0.0 0.0 0.0 8 5.280449978825395E-5 8.800749964708992E-5 0.0 0.0 0.0 9 5.280449978825395E-5 1.7601499929417985E-4 0.0 1.7601499929417985E-5 0.0 10-11 6.160524975296294E-5 1.7601499929417985E-4 0.0 2.640224989412698E-5 0.0 12-13 7.040599971767194E-5 1.7601499929417985E-4 0.0 3.520299985883597E-5 0.0 14-15 7.920674968238094E-5 2.464209990118518E-4 0.0 3.520299985883597E-5 0.0 16-17 1.056089995765079E-4 2.552217489765608E-4 0.0 7.040599971767194E-5 0.0 18-19 1.056089995765079E-4 2.8162399887068777E-4 0.0 8.800749964708992E-5 0.0 20-21 1.056089995765079E-4 2.9922549880010573E-4 0.0 8.800749964708992E-5 0.0 22-23 1.056089995765079E-4 3.1682699872952376E-4 0.0 1.056089995765079E-4 0.0 24-25 1.056089995765079E-4 3.344284986589417E-4 0.0 1.232104995059259E-4 0.0 26-27 1.056089995765079E-4 3.344284986589417E-4 0.0 1.9361649922359784E-4 0.0 28-29 1.056089995765079E-4 3.344284986589417E-4 0.0 3.520299985883597E-4 0.0 30-31 1.056089995765079E-4 3.696314985177777E-4 0.0 8.536727465767723E-4 0.0 32-33 1.056089995765079E-4 3.696314985177777E-4 0.0 0.0020153717419183594 0.0 34-35 1.056089995765079E-4 4.752404980942856E-4 0.0 0.003432292486236507 3.520299985883597E-5 36-37 1.056089995765079E-4 5.808494976707935E-4 0.0 0.005368457478472486 3.520299985883597E-5 38-39 1.056089995765079E-4 5.984509976002115E-4 0.0 0.008703941715097193 3.520299985883597E-5 40-41 1.056089995765079E-4 7.040599971767194E-4 0.0 0.012593873199498569 3.520299985883597E-5 42-43 1.056089995765079E-4 7.216614971061375E-4 0.0 0.01616697768517042 3.520299985883597E-5 44-45 1.144097495412169E-4 7.832667468591003E-4 0.0 0.020549751167595498 3.520299985883597E-5 46-47 1.232104995059259E-4 8.096689967532273E-4 0.0 0.025117340399279466 3.520299985883597E-5 48-49 1.232104995059259E-4 8.184697467179362E-4 0.0 0.029596922131316344 4.400374982354496E-5 50-51 1.232104995059259E-4 9.592817461532802E-4 0.0 0.03424371811268269 5.280449978825395E-5 52-53 1.232104995059259E-4 9.680824961179892E-4 0.0 0.039154536592990306 5.280449978825395E-5 54-55 1.232104995059259E-4 9.680824961179892E-4 0.0 0.04401255057350967 5.280449978825395E-5 56-57 1.232104995059259E-4 9.680824961179892E-4 0.0 0.04784967755812279 5.280449978825395E-5 58-59 1.232104995059259E-4 9.680824961179892E-4 0.0 0.05220604879065374 5.280449978825395E-5 60-61 1.3201124947063487E-4 0.0010120862459415342 0.0 0.056386405023890515 5.280449978825395E-5 62-63 1.9361649922359784E-4 0.0010296877458709523 0.0 0.0611652122547275 5.280449978825395E-5 64-65 1.9361649922359784E-4 0.0012321049950592589 0.0 0.06554798573715258 5.280449978825395E-5 66-67 2.0241724918830683E-4 0.0012321049950592589 0.0 0.06984275171993057 5.280449978825395E-5 68-69 2.112179991530158E-4 0.001240905745023968 0.0 0.07402310795316733 5.280449978825395E-5 70-71 2.464209990118518E-4 0.001267307994918095 0.0 0.07825626868619237 7.040599971767194E-5 72-73 2.8162399887068777E-4 0.0012849094948475129 0.0 0.08165335817257002 8.800749964708992E-5 74-75 2.8162399887068777E-4 0.0013201124947063488 0.0 0.08447839891124162 8.800749964708992E-5 76-77 2.8162399887068777E-4 0.001346514744600476 0.0 0.08701301490107782 8.800749964708992E-5 78-79 2.8162399887068777E-4 0.0013553154945651848 0.0 0.08854434539493718 8.800749964708992E-5 80-81 2.8162399887068777E-4 0.0013553154945651848 0.0 0.08910759339267854 8.800749964708992E-5 82-83 2.8162399887068777E-4 0.0013553154945651848 0.0 0.08976764964003173 8.800749964708992E-5 84-85 2.8162399887068777E-4 0.0013553154945651848 0.0 0.09001407063904357 8.800749964708992E-5 86-87 2.8162399887068777E-4 0.0013729169944946028 0.0 0.09010207813869067 8.800749964708992E-5 88 2.8162399887068777E-4 0.0014609244941416928 0.0 0.09010207813869067 8.800749964708992E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7035 0.0 48.728867 1 GTATCAA 12895 0.0 38.46779 1 TCAACGC 16160 0.0 31.424955 4 ATCAACG 16240 0.0 31.243196 3 TATCAAC 16805 0.0 30.55963 2 CAACGCA 16630 0.0 30.484169 5 AACGCAG 17145 0.0 29.568487 6 ACGCAGA 19690 0.0 25.791128 7 CGCAGAG 19900 0.0 25.496962 8 CTTATAC 3680 0.0 25.340805 1 GTGGTAT 3435 0.0 25.108925 1 TGGTATC 3385 0.0 24.574436 2 GCAGAGT 23430 0.0 21.674234 9 TACATGG 16205 0.0 20.154799 2 TATACAC 5940 0.0 20.12029 3 GTACATG 16390 0.0 19.927301 1 GAGTACT 14580 0.0 19.802284 12-13 ACATGGG 16260 0.0 19.681349 3 AGAGTAC 21175 0.0 19.496035 10-11 CAGAGTA 22715 0.0 18.87773 10-11 >>END_MODULE