##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140126_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5508270 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.574097130314964 33.0 32.0 33.0 28.0 34.0 2 32.40210937372351 33.0 33.0 34.0 31.0 34.0 3 32.56852550800887 33.0 33.0 34.0 31.0 34.0 4 32.96057636971317 33.0 33.0 34.0 31.0 34.0 5 33.10202822301739 34.0 33.0 34.0 33.0 34.0 6 36.55081032701737 38.0 37.0 38.0 34.0 38.0 7 37.10046312181502 38.0 38.0 38.0 36.0 38.0 8 37.033779208353984 38.0 38.0 38.0 36.0 38.0 9 37.20563189531377 38.0 38.0 38.0 36.0 38.0 10-11 37.32105270801904 38.0 38.0 38.0 37.0 38.0 12-13 37.36236595156011 38.0 38.0 38.0 37.0 38.0 14-15 37.38440390540042 38.0 38.0 38.0 37.0 38.0 16-17 37.39016760253219 38.0 38.0 38.0 37.0 38.0 18-19 37.41222098771483 38.0 38.0 38.0 37.0 38.0 20-21 37.42520964380063 38.0 38.0 38.0 37.0 38.0 22-23 37.44035918123936 38.0 38.0 38.0 37.0 38.0 24-25 37.44923407868652 38.0 38.0 38.0 37.0 38.0 26-27 37.41936706724251 38.0 38.0 38.0 37.0 38.0 28-29 37.392609850376076 38.0 38.0 38.0 37.0 38.0 30-31 37.38646643608952 38.0 38.0 38.0 37.0 38.0 32-33 37.372373119659564 38.0 38.0 38.0 37.0 38.0 34-35 37.338464589818685 38.0 38.0 38.0 37.0 38.0 36-37 37.31573137519023 38.0 38.0 38.0 37.0 38.0 38-39 37.25934458518162 38.0 38.0 38.0 37.0 38.0 40-41 37.31185074569892 38.0 38.0 38.0 37.0 38.0 42-43 37.28411980203916 38.0 38.0 38.0 37.0 38.0 44-45 37.240260727728014 38.0 38.0 38.0 37.0 38.0 46-47 37.2086305042945 38.0 38.0 38.0 37.0 38.0 48-49 37.161694538691506 38.0 38.0 38.0 36.5 38.0 50-51 37.12473118025041 38.0 38.0 38.0 36.0 38.0 52-53 37.0833191095203 38.0 38.0 38.0 36.0 38.0 54-55 37.05553764890356 38.0 38.0 38.0 36.0 38.0 56-57 37.00808812831575 38.0 38.0 38.0 36.0 38.0 58-59 36.96889515144534 38.0 38.0 38.0 36.0 38.0 60-61 36.98120615155639 38.0 38.0 38.0 36.0 38.0 62-63 36.98876780048411 38.0 38.0 38.0 36.0 38.0 64-65 36.99214063922416 38.0 38.0 38.0 36.0 38.0 66-67 36.983718749719294 38.0 38.0 38.0 36.0 38.0 68-69 36.933535911760785 38.0 38.0 38.0 36.0 38.0 70-71 36.925748342296615 38.0 38.0 38.0 35.5 38.0 72-73 36.929947228718554 38.0 38.0 38.0 36.0 38.0 74-75 36.93831070461262 38.0 38.0 38.0 36.0 38.0 76-77 36.91544358525639 38.0 38.0 38.0 35.0 38.0 78-79 36.87228157026908 38.0 38.0 38.0 35.0 38.0 80-81 36.82248728041583 38.0 38.0 38.0 35.0 38.0 82-83 36.76934692612542 38.0 38.0 38.0 35.0 38.0 84-85 36.740018737536076 38.0 38.0 38.0 35.0 38.0 86-87 36.75685590809354 38.0 38.0 38.0 35.0 38.0 88-89 36.709995571162025 38.0 38.0 38.0 34.5 38.0 90-91 36.71730402379996 38.0 38.0 38.0 34.0 38.0 92-93 36.69996475115875 38.0 38.0 38.0 34.0 38.0 94-95 36.706929814521736 38.0 38.0 38.0 34.0 38.0 96-97 36.697059506131694 38.0 38.0 38.0 34.0 38.0 98-99 36.67894308499204 38.0 38.0 38.0 34.0 38.0 100 35.11595796284899 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 8.0 19 9.0 20 23.0 21 86.0 22 301.0 23 978.0 24 2385.0 25 4864.0 26 8896.0 27 14726.0 28 22567.0 29 32888.0 30 44733.0 31 58877.0 32 77122.0 33 103243.0 34 153360.0 35 268651.0 36 709126.0 37 4005426.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.616618284869844 19.680425977666307 14.178117630399381 25.52483810706447 2 14.145400261595121 19.87770682318799 43.18932166104912 22.787571254167766 3 18.141506806689158 25.249162257831788 30.36535325687359 26.243977678605468 4 12.497142897601995 17.83578056219061 38.18784456564146 31.479231974565934 5 13.586951983109033 36.70716940164516 35.71150288566102 13.994375729584787 6 30.179330352361085 37.244307196270334 18.44165227920926 14.134710172159318 7 26.53462883990799 32.24063090589242 22.39225746014629 18.832482794053305 8 24.14447730412634 36.83207250189261 21.080702289466565 17.942747904514484 9 24.96923716520795 17.158926486900604 20.92373830621956 36.948098041671884 10-11 24.219900259065007 26.458189231827777 28.62058323212188 20.70132727698533 12-13 25.069413808691294 23.661149507921724 28.771783155146718 22.497653528240264 14-15 22.218573163624878 25.226895195769274 26.077525248399226 26.477006392206626 16-17 22.118024352473643 28.73320479932901 26.72752969625672 22.421241151940627 18-19 22.11871422424827 27.409821958618586 28.490987188354964 21.980476628778185 20-21 22.638768752377704 26.59539597452998 28.439073988124797 22.326761284967517 22-23 22.368427860916007 26.96481868948513 28.341680743929437 22.32507270566942 24-25 22.421724548738986 27.11781132768162 28.424412265159578 22.03605185841982 26-27 22.300259275780107 27.277279272164755 28.403912751797893 22.01854870025724 28-29 22.027344922859903 26.938138433127058 28.48747941329316 22.54703723071988 30-31 22.755584160224934 26.950380140602253 28.459279480497994 21.83475621867482 32-33 22.522695513074222 27.04157595915705 28.573159297583878 21.862569230184846 34-35 22.429245537197616 27.123875999606177 28.682456999512834 21.764421463683373 36-37 22.39777687885057 26.900644256973706 28.58168296043543 22.1198959037403 38-39 21.94876722105374 26.685609326316893 28.959613684081436 22.406009768547932 40-41 22.201566790469375 26.537339625333683 28.923725421834984 22.337368162361958 42-43 22.357724601798594 26.52647878675351 28.87975250551203 22.23604410593587 44-45 22.03674081451429 26.902775589018603 28.761912857254078 22.298570739213034 46-47 22.5170263057799 26.536690698227382 28.184949727886284 22.761333268106437 48-49 22.311815520308755 26.6146867074584 28.33237873074051 22.74111904149233 50-51 21.99902140955551 26.872411454902007 28.55609750459437 22.572469630948117 52-53 22.21991130539619 26.938506115413137 28.682126797194357 22.159455781996314 54-55 22.123098415898422 26.90546366546857 28.3261843625369 22.645253556096105 56-57 22.41624206188632 27.25844716752531 27.884540138964425 22.440770631623945 58-59 21.893302194804626 27.614095434756052 28.482411813382413 22.010190557056905 60-61 22.22187160793156 28.029791785040597 27.773215353843604 21.975121253184238 62-63 21.765573420572483 28.447620497198294 27.73933458757914 22.047471494650082 64-65 21.77769882567097 28.287931242290398 27.8067626409019 22.12760729113673 66-67 21.814486433297713 28.193516718270484 27.67852238515888 22.313474463272925 68-69 21.85940102858043 27.971679034878544 27.887909786387898 22.281010150153133 70-71 22.008434006816007 27.482827164929173 27.99889327988394 22.509845548370873 72-73 22.21154456293435 27.16358841160546 28.093756981996513 22.531110043463677 74-75 22.08041895024643 27.26908159878111 28.048243407769025 22.602256043203436 76-77 22.325026714887347 27.205839889571227 27.83458958073801 22.63454381480341 78-79 22.37082826771613 27.270292131227176 27.737177976564336 22.621701624492356 80-81 22.402473590307014 27.29574874615064 27.686491429319705 22.615286234222644 82-83 22.4174601554314 27.267225364360048 27.78038619518294 22.534928285025615 84-85 22.50101741755763 27.267027153218354 27.746024635250738 22.48593079397328 86-87 22.364033817899543 27.289685886197812 27.810206092673557 22.536074203229084 88-89 22.449022686651713 27.323355653277837 27.737134969292764 22.490486690777683 90-91 22.511992429811283 27.313728176536355 27.727531623781836 22.44674776987053 92-93 22.563305703768304 27.328542210573602 27.72866102273764 22.379491062920454 94-95 22.45912469971775 27.434297580894 27.705367977086738 22.40120974230151 96-97 22.530692934663456 27.505208641798372 27.805431595573697 22.158666827964474 98-99 23.51119664328104 29.422203048231392 28.071523894791966 18.9950764136956 100 30.089571853244923 40.44585928611391 29.464568860641165 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1139.0 1 1004.0 2 1113.0 3 1529.5 4 1951.0 5 2634.5 6 3327.5 7 4312.5 8 5556.5 9 6282.0 10 6184.0 11 5976.0 12 6725.0 13 8445.5 14 11520.5 15 15207.0 16 18042.5 17 19656.5 18 19772.0 19 18659.5 20 17048.5 21 15722.5 22 15870.5 23 18216.5 24 22934.0 25 29829.5 26 39162.5 27 49990.5 28 60211.0 29 71309.0 30 82574.5 31 94150.5 32 107493.5 33 120070.5 34 132277.0 35 144318.0 36 157261.0 37 169423.0 38 179191.0 39 187751.0 40 197600.0 41 207590.5 42 214595.5 43 220427.5 44 234730.5 45 256519.0 46 258231.0 47 251313.5 48 246256.5 49 234732.5 50 227010.0 51 220039.0 52 211290.5 53 200975.0 54 188910.5 55 176501.0 56 162786.5 57 147703.0 58 131818.0 59 113320.5 60 94589.5 61 76774.0 62 60114.5 63 46073.0 64 34288.5 65 25535.0 66 19109.0 67 14459.0 68 10958.0 69 8052.0 70 5886.0 71 4252.5 72 2983.5 73 1973.5 74 1293.0 75 849.0 76 565.0 77 365.5 78 237.0 79 159.5 80 106.0 81 66.0 82 38.0 83 23.5 84 21.5 85 20.0 86 15.5 87 13.5 88 9.0 89 5.0 90 4.5 91 3.5 92 2.5 93 2.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.009476659640867278 3 2.1785424461763858E-4 4 0.0012163528657818154 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 9.077711748519788E-6 24-25 4.539139364651216E-5 26-27 6.355425731357425E-4 28-29 0.0011261598765583464 30-31 8.363159663535543E-4 32-33 5.738690634839464E-4 34-35 0.0011051052850244625 36-37 0.0 38-39 2.3974102068448643E-4 40-41 6.865167734602264E-4 42-43 2.893812394329173E-4 44-45 0.0 46-47 0.0 48-49 0.0016345231164104498 50-51 0.0034865884810436495 52-53 0.0 54-55 0.003298740476472807 56-57 0.03775678693477589 58-59 0.054377642828195856 60-61 0.02903042184557213 62-63 0.00606368948913819 64-65 0.0 66-67 0.0 68-69 1.0386762528175392E-5 70-71 0.003166465843301389 72-73 0.007464680066478308 74-75 0.005153760674417463 76-77 0.006610439218639572 78-79 0.010045318958047373 80-81 0.010715796399868402 82-83 0.04145069159468614 84-85 0.024544946934365413 86-87 9.661903840640877E-4 88-89 0.001377141426227337 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 45.0 20-21 145.0 22-23 345.0 24-25 428.0 26-27 1252.0 28-29 3220.0 30-31 10709.0 32-33 13460.0 34-35 18552.0 36-37 29515.0 38-39 32916.0 40-41 32778.0 42-43 36879.0 44-45 42955.0 46-47 43825.0 48-49 40591.0 50-51 35815.0 52-53 32924.0 54-55 35614.0 56-57 36653.0 58-59 39699.0 60-61 45045.0 62-63 43643.0 64-65 48245.0 66-67 54837.0 68-69 56421.0 70-71 71836.0 72-73 42915.0 74-75 40274.0 76-77 41557.0 78-79 42983.0 80-81 43113.0 82-83 40382.0 84-85 39747.0 86-87 41493.0 88-89 42849.0 90-91 43363.0 92-93 43436.0 94-95 51585.0 96-97 171628.0 98-99 1299571.0 100-101 2715027.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.49548431738638 #Duplication Level Percentage of deduplicated Percentage of total 1 90.19154272173924 78.0116116904908 2 7.097898569469889 12.278723488039642 3 1.6201761249404774 4.204137558185787 4 0.5286564772787037 1.829055921589794 5 0.23332191699778487 1.0090646106292214 6 0.11344792498076033 0.588763992960803 7 0.07084493526068984 0.4289436890765077 8 0.03746906654217245 0.2592724045988467 9 0.027934082464485636 0.21745547925547457 >10 0.07659356741512978 0.9914982627896615 >50 0.0017373995364914942 0.0964617498348257 >100 3.4619546347209646E-4 0.06483567531362423 >500 3.101791067996508E-5 0.02017547723496312 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 5.4463561154409646E-5 0.0 0.0 0.0 5 0.0 9.077260192401607E-5 0.0 0.0 0.0 6 0.0 9.077260192401607E-5 0.0 0.0 1.8154520384803214E-5 7 0.0 9.077260192401607E-5 0.0 0.0 1.8154520384803214E-5 8 0.0 1.0892712230881929E-4 0.0 0.0 3.630904076960643E-5 9 0.0 1.8154520384803215E-4 0.0 5.4463561154409646E-5 3.630904076960643E-5 10-11 0.0 1.8154520384803215E-4 0.0 7.261808153921286E-5 3.630904076960643E-5 12-13 0.0 1.8154520384803215E-4 0.0 7.261808153921286E-5 4.538630096200804E-5 14-15 0.0 2.813950659644498E-4 0.0 1.452361630784257E-4 6.354082134681125E-5 16-17 0.0 2.904723261568514E-4 0.0 1.6339068346322893E-4 9.077260192401607E-5 18-19 0.0 3.1770410673405625E-4 0.0 1.8154520384803215E-4 1.361589028860241E-4 20-21 0.0 3.812449280808675E-4 0.0 1.9969972423283536E-4 1.9969972423283536E-4 22-23 0.0 3.903221882732691E-4 0.0 2.0877698442523697E-4 2.1785424461763858E-4 24-25 0.0 3.9939944846567073E-4 0.0 2.1785424461763858E-4 2.1785424461763858E-4 26-27 0.0 3.9939944846567073E-4 0.0 2.632405455796466E-4 2.1785424461763858E-4 28-29 0.0 3.9939944846567073E-4 0.0 5.990991726985061E-4 2.2693150481004016E-4 30-31 0.0 4.901720503896868E-4 0.0 0.0018880701200195342 2.450860251948434E-4 32-33 0.0 5.0832657077449E-4 0.0 0.004466012014661591 2.54163285387245E-4 34-35 0.0 6.263309532757109E-4 0.0 0.008478161019703102 2.54163285387245E-4 36-37 0.0 7.443353357769318E-4 0.0 0.01485947493496143 2.54163285387245E-4 38-39 0.0 7.806443765465382E-4 0.0 0.033658480793425156 2.723178057720482E-4 40-41 0.0 9.077260192401607E-4 0.0 0.054136779787483186 2.723178057720482E-4 42-43 1.8154520384803214E-5 9.168032794325623E-4 0.0 0.0655559731095244 2.813950659644498E-4 44-45 1.8154520384803214E-5 0.0010075758813565784 0.0 0.07922632695928122 3.1770410673405625E-4 46-47 1.8154520384803214E-5 0.001107425743472996 0.0 0.09394964299135664 3.2678136692645786E-4 48-49 1.8154520384803214E-5 0.0011255802638577993 0.0 0.10738398807611102 3.2678136692645786E-4 50-51 1.8154520384803214E-5 0.001225430125974217 0.0 0.12020107946778208 3.2678136692645786E-4 52-53 1.8154520384803214E-5 0.0012345073861666186 0.0 0.1627189662089912 3.2678136692645786E-4 54-55 1.8154520384803214E-5 0.0012435846463590202 0.0 0.21677405065474276 3.2678136692645786E-4 56-57 1.8154520384803214E-5 0.0012526619065514218 0.0 0.29260548230206584 3.449358873112611E-4 58-59 1.8154520384803214E-5 0.0012889709473210282 0.0 0.3406604977606399 3.903221882732691E-4 60-61 1.8154520384803214E-5 0.0013071254677058314 0.0 0.35807976006985864 4.0847670865807234E-4 62-63 1.8154520384803214E-5 0.001316202727898233 0.0 0.37284846240289604 4.5386300962008033E-4 64-65 1.8154520384803214E-5 0.0014523616307842572 0.0 0.38030089302085773 4.5386300962008033E-4 66-67 1.8154520384803214E-5 0.0014614388909766588 0.0 0.3867639022778477 4.5386300962008033E-4 68-69 1.8154520384803214E-5 0.0014886706715538636 0.0 0.39279120304560233 4.5386300962008033E-4 70-71 1.8154520384803214E-5 0.00152497971232347 0.0 0.397529532866036 4.5386300962008033E-4 72-73 1.8154520384803214E-5 0.0015431342327082733 0.0 0.4010878188614574 4.7201753000488355E-4 74-75 1.8154520384803214E-5 0.001597597793862683 0.0 0.4039017695211019 4.7201753000488355E-4 76-77 1.8154520384803214E-5 0.0016792931355942974 0.0 0.40678833826228566 4.7201753000488355E-4 78-79 1.8154520384803214E-5 0.0017065249161715022 0.0 0.40854024947941914 4.7201753000488355E-4 80-81 1.8154520384803214E-5 0.0017609884773259117 0.0 0.40901226700942406 4.8109479019728515E-4 82-83 1.8154520384803214E-5 0.0017791429977107149 0.0 0.4095478253607757 4.901720503896868E-4 84-85 1.8154520384803214E-5 0.0017882202579031165 0.0 0.40992907028885656 4.901720503896868E-4 86-87 1.8154520384803214E-5 0.0018517610792499277 0.0 0.4100470746713578 4.901720503896868E-4 88 1.8154520384803214E-5 0.0019969972423283535 0.0 0.4100561519315502 5.0832657077449E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6475 0.0 49.298367 1 CTTATAC 8300 0.0 40.36103 1 GTATCAA 11945 0.0 38.012474 1 TATACAC 10980 0.0 32.994427 3 TCAACGC 14110 0.0 31.602438 4 TTATACA 11015 0.0 31.420063 2 ATCAACG 14355 0.0 31.093077 3 CAACGCA 14470 0.0 30.757217 5 TATCAAC 14870 0.0 30.33435 2 AACGCAG 14950 0.0 29.769695 6 ACGCAGA 17220 0.0 25.845352 7 CGCAGAG 17470 0.0 25.475498 8 TACACAT 13975 0.0 25.40404 5 ACACATC 13605 0.0 25.21673 6 ACATCTC 14125 0.0 24.439444 8 CACATCT 15015 0.0 22.848726 7 ATACACA 16525 0.0 22.645891 4 GTGGTAT 3335 0.0 22.520992 1 TGGTATC 3060 0.0 21.895199 2 GCAGAGT 20965 0.0 21.28963 9 >>END_MODULE