##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140124_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5822815 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.650431621131702 33.0 32.0 33.0 28.0 34.0 2 32.44422362723184 33.0 33.0 34.0 31.0 34.0 3 32.615845428714465 33.0 33.0 34.0 31.0 34.0 4 32.98979565725512 33.0 33.0 34.0 31.0 34.0 5 33.14273319691593 34.0 33.0 34.0 33.0 34.0 6 36.61678552384027 38.0 37.0 38.0 34.0 38.0 7 37.14398534042383 38.0 38.0 38.0 36.0 38.0 8 37.095477874533195 38.0 38.0 38.0 36.0 38.0 9 37.24472338551027 38.0 38.0 38.0 36.0 38.0 10-11 37.349607277579665 38.0 38.0 38.0 37.0 38.0 12-13 37.381619199648284 38.0 38.0 38.0 37.0 38.0 14-15 37.40180204935242 38.0 38.0 38.0 37.0 38.0 16-17 37.4114295233491 38.0 38.0 38.0 37.0 38.0 18-19 37.42343153612128 38.0 38.0 38.0 37.0 38.0 20-21 37.43327878876718 38.0 38.0 38.0 37.0 38.0 22-23 37.44626736834029 38.0 38.0 38.0 37.0 38.0 24-25 37.4531942415816 38.0 38.0 38.0 37.0 38.0 26-27 37.42075265729035 38.0 38.0 38.0 37.0 38.0 28-29 37.40227290401283 38.0 38.0 38.0 37.0 38.0 30-31 37.39835954537328 38.0 38.0 38.0 37.0 38.0 32-33 37.38556587947197 38.0 38.0 38.0 37.0 38.0 34-35 37.350637486811266 38.0 38.0 38.0 37.0 38.0 36-37 37.32327839648623 38.0 38.0 38.0 37.0 38.0 38-39 37.26942343799686 38.0 38.0 38.0 37.0 38.0 40-41 37.32074202501836 38.0 38.0 38.0 37.0 38.0 42-43 37.29080852994514 38.0 38.0 38.0 37.0 38.0 44-45 37.24729793265836 38.0 38.0 38.0 37.0 38.0 46-47 37.21571616486467 38.0 38.0 38.0 37.0 38.0 48-49 37.17371442679945 38.0 38.0 38.0 37.0 38.0 50-51 37.14206425091825 38.0 38.0 38.0 36.5 38.0 52-53 37.10525107099624 38.0 38.0 38.0 36.0 38.0 54-55 37.08506985110575 38.0 38.0 38.0 36.0 38.0 56-57 37.039013908441774 38.0 38.0 38.0 36.0 38.0 58-59 37.003686878273854 38.0 38.0 38.0 36.0 38.0 60-61 37.013488839495636 38.0 38.0 38.0 36.0 38.0 62-63 37.02292656063999 38.0 38.0 38.0 36.0 38.0 64-65 37.02751834252237 38.0 38.0 38.0 36.0 38.0 66-67 37.01200564738596 38.0 38.0 38.0 36.0 38.0 68-69 36.96406003328954 38.0 38.0 38.0 36.0 38.0 70-71 36.95728415894432 38.0 38.0 38.0 36.0 38.0 72-73 36.96147277234246 38.0 38.0 38.0 36.0 38.0 74-75 36.97664700656304 38.0 38.0 38.0 36.0 38.0 76-77 36.955784304146 38.0 38.0 38.0 36.0 38.0 78-79 36.915608076559664 38.0 38.0 38.0 36.0 38.0 80-81 36.86858431799085 38.0 38.0 38.0 35.0 38.0 82-83 36.827351419658044 38.0 38.0 38.0 35.0 38.0 84-85 36.79841430205529 38.0 38.0 38.0 35.0 38.0 86-87 36.818828791702124 38.0 38.0 38.0 35.0 38.0 88-89 36.77204780984766 38.0 38.0 38.0 35.0 38.0 90-91 36.7846440223464 38.0 38.0 38.0 35.0 38.0 92-93 36.77320094916992 38.0 38.0 38.0 35.0 38.0 94-95 36.78887034570913 38.0 38.0 38.0 35.0 38.0 96-97 36.7842916768474 38.0 38.0 38.0 35.0 38.0 98-99 36.76347674959616 38.0 38.0 38.0 35.0 38.0 100 35.16268830513727 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 5.0 18 9.0 19 8.0 20 39.0 21 86.0 22 357.0 23 1052.0 24 2526.0 25 5287.0 26 9392.0 27 15831.0 28 24180.0 29 35349.0 30 47720.0 31 62809.0 32 80951.0 33 108119.0 34 156586.0 35 269542.0 36 699668.0 37 4303299.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.47341363240975 19.988167235263358 14.323845081803215 25.214574050523673 2 13.923831698330464 20.14454300186939 43.66869499083854 22.26293030896161 3 17.988973014041683 25.67243353118754 30.501926390815697 25.836667063955076 4 12.058964003023318 18.421107317363873 38.85501307889638 30.66491560071643 5 13.305780795027836 37.0936565904979 35.96106007146028 13.63950254301399 6 29.487730590788132 37.8897320282372 18.86013895340999 13.762398427564673 7 26.226438586834718 32.47369184835857 22.620897280782575 18.678972284024137 8 23.642928720902177 37.2480836159143 21.375880909834848 17.733106753348682 9 24.742637366978 17.400260870386575 21.095707145083605 36.761394617551815 10-11 23.79061502039821 26.85537836939693 29.01194697066625 20.342059639538608 12-13 24.84450390403954 24.01448440316239 29.056873694252694 22.084137998545376 14-15 21.879434603366242 25.59133340145617 26.437968577054228 26.09126341812337 16-17 21.742602160638796 29.07134264097348 27.090865844097745 22.095189354289978 18-19 21.719280107645528 27.79669283671214 28.919002235173192 21.565024820469137 20-21 22.246201014024674 26.976132190732265 28.851564332793266 21.926102462449794 22-23 21.91165533094794 27.382375119245957 28.723700518563728 21.982269031242378 24-25 21.94501864000529 27.508405392848523 28.95889065131382 21.587685315832367 26-27 22.04413740244149 27.597518573381528 28.934030773998188 21.4243132501788 28-29 21.671213862423244 27.220301926008606 29.27922966528882 21.82925454627933 30-31 22.236824182083858 27.385115769979056 28.90682401697336 21.471236030963723 32-33 21.936174529864527 27.053068131248924 29.1058928642971 21.904864474589445 34-35 21.588933480929303 27.55754411640734 29.497487897268783 21.35603450539458 36-37 22.001648968129285 27.376598505214115 28.93825506369402 21.683497462962585 38-39 21.543137553601017 27.113765051074566 29.352719694880765 21.99037770044366 40-41 21.819691106661075 27.010438594530488 29.297734206569075 21.872136092239362 42-43 22.07482432987189 26.944565335462585 29.19823744422359 21.782372890441938 44-45 21.716443004255943 27.41922197153852 29.022337124835513 21.841997899370025 46-47 22.182106272275007 26.990479147216462 28.472570343950483 22.35484423655805 48-49 21.998277956006458 27.026027859097525 28.589032100007312 22.38666208488871 50-51 21.68157619261525 27.268820305897005 28.83867541142499 22.21092809006275 52-53 21.847170609393636 27.315862832062678 29.08934721883097 21.74761933971272 54-55 21.85031960674998 27.29498150497609 28.626085778553357 22.228613109720577 56-57 22.215537422224298 27.6806627464626 28.09116138711176 22.012638444201343 58-59 21.598927894316848 28.122784758456298 28.774766920043515 21.503520427183336 60-61 22.029874415908186 28.666369238417467 27.86367988993022 21.440076455744126 62-63 21.527466827827734 29.070849322111204 27.87162937099791 21.53005447906315 64-65 21.519038015648352 28.99427432123649 27.857393451813838 21.629294211301318 66-67 21.620642532194868 28.838640495610633 27.810006275689446 21.730710696505053 68-69 21.67797986318015 28.494054742381277 28.06332918426152 21.76463621017706 70-71 21.758483980657036 28.051328115076373 28.23170783503049 21.958480069236103 72-73 21.973150470539565 27.650381834077088 28.364881517100137 22.011586178283217 74-75 21.892827987525916 27.742328391258937 28.26803430827194 22.096809312943208 76-77 21.97350554747827 27.688286454195676 28.21400896772267 22.124199030603386 78-79 21.96852326934127 27.727788645327582 28.17494002091031 22.128748064420837 80-81 22.015416984484553 27.732318359249014 28.12315282105801 22.12911183520842 82-83 22.073204630687883 27.744411082972707 28.207613581604523 21.97477070473489 84-85 22.17929630181132 27.703959142143397 28.12844554929019 21.988299006755092 86-87 21.96885417034924 27.71474983403874 28.22605807800036 22.09033791761166 88-89 22.086782949024084 27.69634428556863 28.142877277217586 22.0739954881897 90-91 22.11796317637412 27.728886948794734 28.135546582560057 22.01760329227109 92-93 22.09684372567431 27.724684267846982 28.15059105966622 22.027880946812484 94-95 21.999595778695998 27.855242513507545 28.102004750426385 22.043156957370073 96-97 22.103836016967524 27.9465673214743 28.177712048219156 21.77188461333902 98-99 23.175364625701416 29.82380744117552 28.44855603544923 18.55227189767383 100 22.1129643667516 30.765330949278656 22.32930154107134 24.792403142898394 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 952.0 1 864.5 2 1084.5 3 1520.0 4 1969.0 5 2817.0 6 3633.5 7 4696.5 8 6039.0 9 6768.0 10 6638.0 11 6530.0 12 7332.5 13 9272.5 14 13004.5 15 17432.5 16 20867.0 17 22729.5 18 22463.0 19 20848.0 20 19248.5 21 18007.0 22 18292.5 23 21091.0 24 26332.5 25 33817.5 26 43893.0 27 55491.5 28 66858.5 29 79144.0 30 92010.0 31 105579.0 32 120220.0 33 134889.5 34 149296.0 35 162771.0 36 177111.0 37 190065.0 38 199113.5 39 207945.5 40 218361.0 41 227261.5 42 236112.5 43 257383.0 44 277700.5 45 280537.5 46 270563.5 47 258130.5 48 249174.0 49 240117.5 50 232556.0 51 223222.0 52 211232.5 53 198296.5 54 183897.0 55 168026.5 56 152472.0 57 136399.0 58 119510.0 59 103198.5 60 86375.5 61 69869.5 62 54863.0 63 42301.5 64 32089.0 65 23857.5 66 17394.5 67 13065.5 68 10002.5 69 7301.0 70 5333.0 71 3895.0 72 2725.0 73 1895.5 74 1303.0 75 848.0 76 531.5 77 329.0 78 216.5 79 139.0 80 89.5 81 52.0 82 36.0 83 26.0 84 19.0 85 14.0 86 10.0 87 8.0 88 7.5 89 6.5 90 5.0 91 3.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.010355815872563356 3 1.545644160084083E-4 4 0.0013052106240710034 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 8.587339685102254E-6 24-25 1.0305451876030223E-4 26-27 7.643926985896525E-4 28-29 0.0012801174477688455 30-31 7.567507325003113E-4 32-33 7.064959806840552E-4 34-35 0.0011573988100903754 36-37 0.0 38-39 2.3530184826115854E-4 40-41 7.713727445784111E-4 42-43 3.4386224843059945E-4 44-45 0.0 46-47 0.0 48-49 0.0019476084315215015 50-51 0.003914244444111445 52-53 0.0 54-55 0.0037914419792505053 56-57 0.04014830405389437 58-59 0.05637760579553199 60-61 0.03066170787217717 62-63 0.006757767950001236 64-65 0.0 66-67 0.0 68-69 4.8781977439896456E-5 70-71 0.003437191158991228 72-73 0.00791879064950001 74-75 0.0055618082437909125 76-77 0.0069912328718610825 78-79 0.009934797758102043 80-81 0.010880638054695135 82-83 0.04230982844158137 84-85 0.02475180550787157 86-87 9.873177443292928E-4 88-89 0.0014565069878064662 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 45.0 20-21 168.0 22-23 357.0 24-25 439.0 26-27 1359.0 28-29 3559.0 30-31 10619.0 32-33 13302.0 34-35 18526.0 36-37 28589.0 38-39 33562.0 40-41 32924.0 42-43 36299.0 44-45 43216.0 46-47 44127.0 48-49 40910.0 50-51 36496.0 52-53 35680.0 54-55 37881.0 56-57 39262.0 58-59 39147.0 60-61 40883.0 62-63 41211.0 64-65 48474.0 66-67 56035.0 68-69 57673.0 70-71 76263.0 72-73 42596.0 74-75 39714.0 76-77 41141.0 78-79 42251.0 80-81 41591.0 82-83 39568.0 84-85 39135.0 86-87 40744.0 88-89 41940.0 90-91 42965.0 92-93 42805.0 94-95 51646.0 96-97 175122.0 98-99 397388.0 100-101 3927203.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.93596862912189 #Duplication Level Percentage of deduplicated Percentage of total 1 91.13983326876087 80.14469519185154 2 6.557017594243922 11.531953869360676 3 1.3892870497067122 3.6650490725956426 4 0.46909429164348004 1.6500104365624486 5 0.19087520382353734 0.8392397967751912 6 0.09239709035859331 0.4875016583517241 7 0.051008050140930614 0.3139809607917885 8 0.031956748148350506 0.22481180821296792 9 0.01838129529591055 0.1454739305853434 >10 0.05842803462014071 0.7827494459716444 >50 0.0011303495005430407 0.07298773777455034 >100 5.359106572315552E-4 0.09749209887427221 >500 2.755655027832463E-5 0.017010947824427053 >1k 2.755654947173515E-5 0.02704304446778656 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 1.7173824000934257E-5 0.0 0.0 0.0 0.0 6 1.7173824000934257E-5 0.0 0.0 0.0 0.0 7 1.7173824000934257E-5 0.0 0.0 1.7173824000934257E-5 0.0 8 1.7173824000934257E-5 0.0 0.0 1.7173824000934257E-5 0.0 9 1.7173824000934257E-5 5.1521472002802766E-5 0.0 6.869529600373703E-5 0.0 10-11 1.7173824000934257E-5 5.1521472002802766E-5 0.0 6.869529600373703E-5 0.0 12-13 1.7173824000934257E-5 5.1521472002802766E-5 0.0 6.869529600373703E-5 0.0 14-15 1.7173824000934257E-5 5.1521472002802766E-5 0.0 7.728220800420416E-5 0.0 16-17 1.7173824000934257E-5 5.1521472002802766E-5 0.0 1.0304294400560553E-4 0.0 18-19 1.7173824000934257E-5 5.1521472002802766E-5 0.0 1.202167680065398E-4 1.7173824000934257E-5 20-21 1.7173824000934257E-5 5.1521472002802766E-5 0.0 1.545644160084083E-4 1.7173824000934257E-5 22-23 1.7173824000934257E-5 8.586912000467128E-5 0.0 1.803251520098097E-4 3.4347648001868515E-5 24-25 1.7173824000934257E-5 8.586912000467128E-5 0.0 1.8891206401027683E-4 7.728220800420416E-5 26-27 1.7173824000934257E-5 8.586912000467128E-5 0.0 2.490204480135467E-4 8.586912000467128E-5 28-29 1.7173824000934257E-5 8.586912000467128E-5 0.0 5.495623680298962E-4 8.586912000467128E-5 30-31 1.7173824000934257E-5 1.0304294400560553E-4 0.0 0.0013223844480719376 8.586912000467128E-5 32-33 1.7173824000934257E-5 1.0304294400560553E-4 0.0 0.0031943312641737713 8.586912000467128E-5 34-35 1.7173824000934257E-5 1.288036800070069E-4 0.0 0.005426928384295225 1.202167680065398E-4 36-37 1.7173824000934257E-5 1.545644160084083E-4 0.0 0.008896040832483944 1.202167680065398E-4 38-39 1.7173824000934257E-5 1.545644160084083E-4 0.0 0.014056774944764688 1.202167680065398E-4 40-41 1.7173824000934257E-5 1.8891206401027683E-4 0.0 0.01908011846503796 1.202167680065398E-4 42-43 1.7173824000934257E-5 1.9749897601074396E-4 0.0 0.024172157281314964 1.2880368000700693E-4 44-45 1.7173824000934257E-5 2.3184662401261246E-4 0.0 0.029787997729620465 1.3739059200747406E-4 46-47 1.7173824000934257E-5 2.5760736001401386E-4 0.0 0.03538666435392503 1.4597750400794116E-4 48-49 1.7173824000934257E-5 2.5760736001401386E-4 0.0 0.0409853309782296 1.8891206401027683E-4 50-51 1.7173824000934257E-5 2.9195500801588233E-4 0.0 0.04644660701052669 1.8891206401027683E-4 52-53 1.7173824000934257E-5 3.091288320168166E-4 0.0 0.0515644065628051 2.1467280001167822E-4 54-55 1.7173824000934257E-5 3.091288320168166E-4 0.0 0.05684535744309239 2.404335360130796E-4 56-57 1.7173824000934257E-5 3.091288320168166E-4 0.0 0.06217782979538247 2.404335360130796E-4 58-59 1.7173824000934257E-5 3.091288320168166E-4 0.0 0.06775073568368564 2.404335360130796E-4 60-61 1.7173824000934257E-5 3.091288320168166E-4 0.0 0.07304886038797385 2.404335360130796E-4 62-63 1.7173824000934257E-5 3.091288320168166E-4 0.0 0.07835557200426255 2.404335360130796E-4 64-65 1.7173824000934257E-5 3.2630265601775086E-4 0.0 0.08351630611654329 2.404335360130796E-4 66-67 1.7173824000934257E-5 3.2630265601775086E-4 0.0 0.08910638582884739 2.490204480135467E-4 68-69 1.7173824000934257E-5 3.3488956801821796E-4 0.0 0.09405244714111646 2.5760736001401386E-4 70-71 1.7173824000934257E-5 3.434764800186851E-4 0.0 0.09836307696535096 2.5760736001401386E-4 72-73 1.7173824000934257E-5 3.434764800186851E-4 0.0 0.10159175587752658 2.9195500801588233E-4 74-75 1.7173824000934257E-5 3.434764800186851E-4 0.0 0.10419359021366814 2.9195500801588233E-4 76-77 1.7173824000934257E-5 3.520633920191523E-4 0.0 0.10689846749381528 3.091288320168166E-4 78-79 1.7173824000934257E-5 3.606503040196194E-4 0.0 0.10884769651792131 3.2630265601775086E-4 80-81 1.7173824000934257E-5 3.606503040196194E-4 0.0 0.10926845520594419 3.3488956801821796E-4 82-83 1.7173824000934257E-5 3.606503040196194E-4 0.0 0.1096119316859629 3.7782412802055365E-4 84-85 1.7173824000934257E-5 3.606503040196194E-4 0.0 0.10983519139797504 3.7782412802055365E-4 86-87 1.7173824000934257E-5 3.606503040196194E-4 0.0 0.11001551654998484 3.864110400210208E-4 88 1.7173824000934257E-5 3.949979520214879E-4 0.0 0.11010138566998952 3.949979520214879E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 7635 0.0 52.65089 1 GGTATCA 6750 0.0 48.99208 1 GTATCAA 13110 0.0 38.819916 1 TATACAC 11085 0.0 38.274693 3 TTATACA 10730 0.0 38.144516 2 TCAACGC 15095 0.0 33.1139 4 ATCAACG 15110 0.0 33.109447 3 CAACGCA 15610 0.0 32.048096 5 TATCAAC 15850 0.0 31.648457 2 AACGCAG 16050 0.0 31.169521 6 ACACATC 14160 0.0 28.385195 6 TACACAT 15035 0.0 27.932814 5 ACATCTC 14510 0.0 27.878073 8 ACGCAGA 18415 0.0 27.096529 7 CGCAGAG 18575 0.0 26.816893 8 CACATCT 15945 0.0 25.180616 7 CATCTCC 16355 0.0 24.4706 9 ATACACA 19780 0.0 23.077961 4 GCAGAGT 22215 0.0 22.480846 9 GTGGTAT 3585 0.0 22.162642 1 >>END_MODULE