##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140121_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5645492 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.603130781161322 33.0 32.0 33.0 28.0 34.0 2 32.42351313224782 33.0 33.0 34.0 31.0 34.0 3 32.60020224986591 33.0 33.0 34.0 31.0 34.0 4 32.979065774958144 33.0 33.0 34.0 31.0 34.0 5 33.1327083627078 34.0 33.0 34.0 33.0 34.0 6 36.60410146715291 38.0 37.0 38.0 34.0 38.0 7 37.15808241336627 38.0 38.0 38.0 36.0 38.0 8 37.10591707507512 38.0 38.0 38.0 36.0 38.0 9 37.258802067206894 38.0 38.0 38.0 36.0 38.0 10-11 37.36376944648934 38.0 38.0 38.0 37.0 38.0 12-13 37.395247748114784 38.0 38.0 38.0 37.0 38.0 14-15 37.41662471579093 38.0 38.0 38.0 37.0 38.0 16-17 37.42688192632281 38.0 38.0 38.0 37.0 38.0 18-19 37.44412781029537 38.0 38.0 38.0 37.0 38.0 20-21 37.45386164796437 38.0 38.0 38.0 37.0 38.0 22-23 37.47206532973767 38.0 38.0 38.0 37.0 38.0 24-25 37.47978436674359 38.0 38.0 38.0 37.0 38.0 26-27 37.452002824048094 38.0 38.0 38.0 37.0 38.0 28-29 37.43227143783108 38.0 38.0 38.0 37.0 38.0 30-31 37.4274419938361 38.0 38.0 38.0 37.0 38.0 32-33 37.41652496346549 38.0 38.0 38.0 37.0 38.0 34-35 37.38730303673201 38.0 38.0 38.0 37.0 38.0 36-37 37.36469052556336 38.0 38.0 38.0 37.0 38.0 38-39 37.33562645191054 38.0 38.0 38.0 37.0 38.0 40-41 37.34709422441199 38.0 38.0 38.0 37.0 38.0 42-43 37.31269613804591 38.0 38.0 38.0 37.0 38.0 44-45 37.267834339969994 38.0 38.0 38.0 37.0 38.0 46-47 37.23429706864983 38.0 38.0 38.0 37.0 38.0 48-49 37.1894953057285 38.0 38.0 38.0 37.0 38.0 50-51 37.156518415120686 38.0 38.0 38.0 37.0 38.0 52-53 37.11954185931039 38.0 38.0 38.0 36.0 38.0 54-55 37.10194654848125 38.0 38.0 38.0 36.0 38.0 56-57 37.056747276655386 38.0 38.0 38.0 36.0 38.0 58-59 37.02335047851897 38.0 38.0 38.0 36.0 38.0 60-61 37.042145534569435 38.0 38.0 38.0 36.0 38.0 62-63 37.052656320625786 38.0 38.0 38.0 36.0 38.0 64-65 37.058524062717325 38.0 38.0 38.0 36.0 38.0 66-67 37.04957139753574 38.0 38.0 38.0 36.0 38.0 68-69 37.00670542505005 38.0 38.0 38.0 36.0 38.0 70-71 36.99970227231108 38.0 38.0 38.0 36.0 38.0 72-73 37.00672913107759 38.0 38.0 38.0 36.0 38.0 74-75 37.022390841403464 38.0 38.0 38.0 36.0 38.0 76-77 37.00149656540002 38.0 38.0 38.0 36.0 38.0 78-79 36.96131859875659 38.0 38.0 38.0 36.0 38.0 80-81 36.91432734904712 38.0 38.0 38.0 35.5 38.0 82-83 36.868773407152325 38.0 38.0 38.0 35.0 38.0 84-85 36.839700373748 38.0 38.0 38.0 35.0 38.0 86-87 36.86213858229208 38.0 38.0 38.0 35.0 38.0 88-89 36.81513630412131 38.0 38.0 38.0 35.0 38.0 90-91 36.82958410975469 38.0 38.0 38.0 35.0 38.0 92-93 36.81434105142119 38.0 38.0 38.0 35.0 38.0 94-95 36.82517078383409 38.0 38.0 38.0 35.0 38.0 96-97 36.82337136637116 38.0 38.0 38.0 35.0 38.0 98-99 36.803975462975416 38.0 38.0 38.0 35.0 38.0 100 35.30207011515018 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 7.0 20 14.0 21 65.0 22 271.0 23 924.0 24 2131.0 25 4478.0 26 8254.0 27 13906.0 28 21921.0 29 32861.0 30 43984.0 31 58071.0 32 74861.0 33 99743.0 34 145338.0 35 252494.0 36 666588.0 37 4219576.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.19493925418723 19.638199823859463 14.249989194918708 24.916871727034597 2 14.240986594573949 20.129521007526545 43.10205948570343 22.52743291219608 3 18.145786112632486 25.473157622138505 30.337477300408327 26.04357896482068 4 12.393858744027243 17.87649291240252 38.88013745643597 30.849510887134272 5 13.529166279927418 36.955804737656166 35.64847846742144 13.866550514994975 6 30.01741920810445 37.48068370303243 18.748002831285564 13.753894257577551 7 26.659129089191875 32.44174289858174 22.682345489108833 18.216782523117562 8 24.152261662933896 36.76069331069816 21.166197737947375 17.920847288420568 9 25.267842023334726 17.22452179544316 21.167650224285147 36.33998595693697 10-11 24.160764021984267 26.611560161629843 28.838965673850925 20.388710142534965 12-13 25.10129320881156 23.96366871124784 28.93009147829808 22.004946601642512 14-15 22.24636931555301 25.41436601096946 26.562069346657474 25.777195326820053 16-17 21.886896660202513 28.720499471082412 27.16943005144636 22.223173817268716 18-19 21.862248675580446 27.634801360094034 29.024644796237425 21.478305168088095 20-21 22.58524752750596 26.741887617433836 28.994061196231346 21.67880365882886 22-23 22.27460031332969 26.831600525192144 28.869899801104378 22.023899360373786 24-25 22.160994861206515 26.96400187251735 28.96820662174928 21.906796644526853 26-27 22.128257814302867 27.132379289068858 28.9201027423199 21.81926015430837 28-29 21.92028595403067 27.18666155173625 28.956859921888313 21.936192572344762 30-31 22.56423474798379 26.833465257941285 28.864249755812338 21.73805023826258 32-33 21.848360042387537 27.209446832683337 28.92026066700295 22.021932457926173 34-35 22.163809794666417 27.17665812309181 28.967966628292302 21.691565453949472 36-37 21.996058475221755 27.15587516936868 28.924472769415253 21.923593585994304 38-39 21.853906979555013 26.93671788105389 29.196472380058907 22.01290275933219 40-41 22.213567951732337 26.76891936583541 29.063063120124905 21.954449562307353 42-43 22.20774070123986 26.817702000829257 28.91805466203104 22.056502635899843 44-45 22.021978243730935 27.11791120004366 28.799506886030223 22.060603670195178 46-47 22.32898372256966 26.866536137323948 28.383682987090697 22.42079715301569 48-49 22.188890646456812 26.972240847776106 28.424352798942472 22.414515706824606 50-51 22.026845281482405 27.15818918624994 28.529306509752157 22.285659022515507 52-53 22.21503000148152 27.089854870801165 28.59554507170109 22.099570056016223 54-55 22.134714774506083 27.042507530440535 28.393149121013227 22.429628574040155 56-57 22.37193291139716 27.311576424559618 28.079679830231335 22.236810833811887 58-59 22.03775758207173 27.513281454090837 28.452439449164668 21.99652151467277 60-61 22.2776632769881 27.711746938150654 28.074298832261825 21.936290952599418 62-63 22.002476549578137 27.898218319468963 28.08317869724557 22.016126433707324 64-65 21.95389550321464 27.808390618361212 28.104771398511847 22.132942479912305 66-67 22.057393101437963 27.73915966224042 27.957891755413684 22.24555548090793 68-69 22.073574303340614 27.57372157742563 28.162481814807826 22.190222304425923 70-71 22.130272752624357 27.253837216564136 28.268201285348262 22.34768874546324 72-73 22.276752181311366 27.18783858478432 28.22905378334058 22.30635545056374 74-75 22.086804691602495 27.29450283845763 28.224334236822756 22.394358233117117 76-77 22.260411684912338 27.277607575591002 28.048865547549777 22.413115191946883 78-79 22.256330874817653 27.349626281267657 27.99023325462932 22.40380958928537 80-81 22.34021799629396 27.328558039941854 27.947310306823876 22.383913656940322 82-83 22.36504397614534 27.345660501327067 28.010539308387788 22.278756214139804 84-85 22.47996685713032 27.314868009673837 27.92618066210173 22.278984471094116 86-87 22.24896738579478 27.38720912303489 27.986233899285963 22.37758959188437 88-89 22.3482866133797 27.369145606765343 27.91469546955238 22.367872310302577 90-91 22.434563887695287 27.381528718207544 27.931467168002218 22.252440226094954 92-93 22.43932720207709 27.40011118027762 27.86785225047566 22.292709367169632 94-95 22.25992296650197 27.487316350688033 27.89876519730842 22.353995485501567 96-97 22.378289341901592 27.56659283148472 27.942734997317515 22.112382829296173 98-99 23.44783072960027 29.470422488127788 28.208493220608116 18.873253561663827 100 29.839268104465738 40.66448984280123 29.49624205273303 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1049.0 1 962.5 2 1173.5 3 1647.0 4 2154.0 5 3004.0 6 3828.0 7 4957.0 8 6339.0 9 7074.5 10 7032.5 11 7026.5 12 7782.0 13 9598.5 14 13278.5 15 17529.5 16 20634.0 17 22340.0 18 22188.5 19 20641.0 20 18875.0 21 17511.0 22 17794.0 23 20653.0 24 25819.5 25 33354.5 26 43753.0 27 55597.5 28 66641.5 29 77852.5 30 89205.5 31 100732.5 32 113652.5 33 127732.5 34 141865.5 35 155284.0 36 168817.5 37 180830.5 38 190386.0 39 198179.0 40 207936.0 41 218103.0 42 224585.5 43 235367.5 44 248392.0 45 252512.5 46 249482.5 47 246861.5 48 243455.5 49 237342.0 50 231592.0 51 224735.5 52 214776.0 53 203223.0 54 190607.5 55 176938.0 56 161770.5 57 145603.5 58 129271.0 59 110999.5 60 92687.5 61 75630.0 62 59417.5 63 45257.5 64 33863.5 65 25414.0 66 19065.5 67 14459.0 68 10944.5 69 8209.5 70 6113.0 71 4410.0 72 3127.5 73 2078.5 74 1321.0 75 842.5 76 562.0 77 369.5 78 237.0 79 146.5 80 95.5 81 59.5 82 36.0 83 24.5 84 22.0 85 20.5 86 16.0 87 10.5 88 6.5 89 3.5 90 1.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00954744068364635 3 2.8341196834571727E-4 4 0.001186787617447691 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 8.85712526942268E-6 24-25 6.20038474273098E-5 26-27 5.935242780663014E-4 28-29 0.0013912558946714722 30-31 7.894126459470979E-4 32-33 8.531467785710858E-4 34-35 0.0011404370742906548 36-37 0.0 38-39 1.6187326941737314E-4 40-41 9.59118826769658E-4 42-43 3.915002919408572E-4 44-45 0.0 46-47 0.0 48-49 0.0018197496024547023 50-51 0.003744102802903091 52-53 0.0 54-55 0.003820352142868945 56-57 0.03737436109199004 58-59 0.053365556001293835 60-61 0.02872774591739245 62-63 0.006602114851101555 64-65 0.0 66-67 0.0 68-69 3.055478008655354E-5 70-71 0.0035346755276070008 72-73 0.007551496985189992 74-75 0.005548881221301386 76-77 0.00663421994437887 78-79 0.009935483801670558 80-81 0.010648665464955905 82-83 0.040219984780678786 84-85 0.024104540149955497 86-87 0.0013315214198717823 88-89 0.0015039598811351527 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 43.0 20-21 198.0 22-23 357.0 24-25 442.0 26-27 1376.0 28-29 3532.0 30-31 10320.0 32-33 13325.0 34-35 18183.0 36-37 29057.0 38-39 34483.0 40-41 33562.0 42-43 38223.0 44-45 46503.0 46-47 46794.0 48-49 43872.0 50-51 40570.0 52-53 39004.0 54-55 42599.0 56-57 44442.0 58-59 44133.0 60-61 44650.0 62-63 43995.0 64-65 48837.0 66-67 54057.0 68-69 54333.0 70-71 63152.0 72-73 45746.0 74-75 45061.0 76-77 47489.0 78-79 48727.0 80-81 48270.0 82-83 45421.0 84-85 44811.0 86-87 46314.0 88-89 48393.0 90-91 48895.0 92-93 48340.0 94-95 56804.0 96-97 174061.0 98-99 1306015.0 100-101 2751103.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.48426053262789 #Duplication Level Percentage of deduplicated Percentage of total 1 91.04874919966159 79.65332496153088 2 6.557467698230606 11.473504250925961 3 1.4203533610555996 3.7277569046094534 4 0.4666675097316055 1.6330424801388976 5 0.21511649509206057 0.9409653750749798 6 0.09915491364345899 0.5204696578964751 7 0.05966410261770846 0.36537689284971364 8 0.03395800930540824 0.23766330665949895 9 0.02428852287093437 0.1912377116514162 >10 0.07219810428744503 0.9765114473938621 >50 0.0014463521843087203 0.08316028501180084 >100 8.768100437359257E-4 0.13716661580162082 >500 2.9460637811112884E-5 0.0224486498105429 >1k 2.946063780791383E-5 0.03737146064495135 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.542649604321466E-5 0.0 1.771324802160733E-5 0.0 3 0.0 3.542649604321466E-5 0.0 5.3139744064821984E-5 0.0 4 0.0 5.3139744064821984E-5 0.0 7.085299208642932E-5 0.0 5 0.0 5.3139744064821984E-5 0.0 7.085299208642932E-5 0.0 6 8.856624010803665E-5 5.3139744064821984E-5 0.0 7.085299208642932E-5 0.0 7 8.856624010803665E-5 5.3139744064821984E-5 0.0 7.085299208642932E-5 0.0 8 8.856624010803665E-5 7.085299208642932E-5 0.0 7.085299208642932E-5 0.0 9 8.856624010803665E-5 1.5941923219446597E-4 0.0 7.085299208642932E-5 0.0 10-11 8.856624010803665E-5 1.5941923219446597E-4 0.0 7.970961609723298E-5 0.0 12-13 8.856624010803665E-5 1.5941923219446597E-4 0.0 9.742286411884032E-5 0.0 14-15 8.856624010803665E-5 2.3027222428089527E-4 0.0 1.0627948812964397E-4 0.0 16-17 1.0627948812964397E-4 2.3027222428089527E-4 0.0 1.1513611214044763E-4 0.0 18-19 1.0627948812964397E-4 2.479854723025026E-4 0.0 1.5941923219446597E-4 0.0 20-21 1.0627948812964397E-4 2.656987203241099E-4 0.0 1.771324802160733E-4 0.0 22-23 1.0627948812964397E-4 3.3655171241053924E-4 0.0 2.0370235224848428E-4 0.0 24-25 1.0627948812964397E-4 3.6312158444295025E-4 0.0 2.656987203241099E-4 1.771324802160733E-5 26-27 1.0627948812964397E-4 3.8083483246455755E-4 0.0 3.808348324645576E-4 1.771324802160733E-5 28-29 1.0627948812964397E-4 3.896914564753612E-4 0.0 7.085299208642931E-4 1.771324802160733E-5 30-31 1.0627948812964397E-4 5.136841926266125E-4 0.0 0.001815607922214751 2.6569872032410992E-5 32-33 1.0627948812964397E-4 5.136841926266125E-4 0.0 0.004268892773207366 3.542649604321466E-5 34-35 1.0627948812964397E-4 5.579673126806309E-4 0.0 0.007519273785172311 3.542649604321466E-5 36-37 1.0627948812964397E-4 6.111070567454528E-4 0.0 0.012514409727265578 3.542649604321466E-5 38-39 1.0627948812964397E-4 6.553901767994712E-4 0.0 0.01994511727232985 3.542649604321466E-5 40-41 1.0627948812964397E-4 6.731034248210785E-4 0.0 0.02781865601793431 3.542649604321466E-5 42-43 1.0627948812964397E-4 6.996732968534895E-4 0.0 0.035709908011560376 3.542649604321466E-5 44-45 1.239927361512513E-4 8.236660330047408E-4 0.0 0.044823374118677345 3.542649604321466E-5 46-47 1.4170598417285863E-4 9.210888971235811E-4 0.0 0.05410511608199958 3.542649604321466E-5 48-49 1.4170598417285863E-4 9.210888971235811E-4 0.0 0.0633160050532354 5.3139744064821984E-5 50-51 1.4170598417285863E-4 0.0010716515053072434 0.0 0.07242061453634156 5.3139744064821984E-5 52-53 1.4170598417285863E-4 0.001080508129318047 0.0 0.08167578662763139 6.199636807562565E-5 54-55 1.4170598417285863E-4 0.0010982213773396542 0.0 0.09005415294185165 7.970961609723298E-5 56-57 1.4170598417285863E-4 0.0011513611214044764 0.0 0.09671433419797601 8.856624010803665E-5 58-59 1.4170598417285863E-4 0.0011513611214044764 0.0 0.10317081310185189 8.856624010803665E-5 60-61 1.4170598417285863E-4 0.001186787617447691 0.0 0.10957415226166292 1.0627948812964397E-4 62-63 1.5941923219446597E-4 0.0012310707375017093 0.0 0.11582692881329032 1.0627948812964397E-4 64-65 1.5941923219446597E-4 0.001346206849642157 0.0 0.12124718270790216 1.0627948812964397E-4 66-67 1.5941923219446597E-4 0.0013550634736529607 0.0 0.12716340754711902 1.1513611214044763E-4 68-69 1.5941923219446597E-4 0.0013904899696961753 0.0 0.13284050353804416 1.239927361512513E-4 70-71 1.5941923219446597E-4 0.0014082032177177826 0.0 0.13725995891943518 1.4170598417285863E-4 72-73 1.5941923219446597E-4 0.0014170598417285864 0.0 0.14149342519659935 2.1255897625928794E-4 74-75 1.5941923219446597E-4 0.00142591646573939 0.0 0.14462867009642383 2.1255897625928794E-4 76-77 1.5941923219446597E-4 0.0014701995857934083 0.0 0.14794104747646442 2.1255897625928794E-4 78-79 1.5941923219446597E-4 0.001505626081836623 0.0 0.1495883795424739 2.1255897625928794E-4 80-81 1.5941923219446597E-4 0.001505626081836623 0.0 0.1501729167271869 2.3027222428089527E-4 82-83 1.5941923219446597E-4 0.001505626081836623 0.0 0.15074859728788917 2.8341196834571727E-4 84-85 1.5941923219446597E-4 0.001505626081836623 0.0 0.15100543938420247 2.8341196834571727E-4 86-87 1.5941923219446597E-4 0.001505626081836623 0.0 0.15108514900029973 2.8341196834571727E-4 88 1.5941923219446597E-4 0.0015587658259014448 0.0 0.15109400562431052 2.8341196834571727E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6835 0.0 49.4999 1 GTATCAA 13245 0.0 38.9106 1 CTTATAC 5195 0.0 36.700184 1 TCAACGC 15645 0.0 32.421577 4 ATCAACG 15730 0.0 32.21933 3 TATCAAC 16235 0.0 31.534725 2 CAACGCA 16130 0.0 31.393398 5 AACGCAG 16710 0.0 30.405602 6 TATACAC 7230 0.0 29.604866 3 ACGCAGA 18830 0.0 26.937151 7 CGCAGAG 19205 0.0 26.366858 8 TTATACA 8080 0.0 25.334332 2 TGGTATC 3180 0.0 23.28616 2 GCAGAGT 22735 0.0 22.3291 9 ACATCTC 8855 0.0 22.057173 8 ACACATC 8780 0.0 21.760935 6 TACACAT 9735 0.0 21.72432 5 GTGGTAT 3655 0.0 21.65715 1 GAGTACT 13300 0.0 19.740551 12-13 GTACATG 16060 0.0 19.317804 1 >>END_MODULE