##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140120_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5901604 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.787750584417388 33.0 32.0 34.0 28.0 34.0 2 32.47051920122055 33.0 33.0 34.0 31.0 34.0 3 32.64621550344618 33.0 33.0 34.0 31.0 34.0 4 32.99893893253427 33.0 33.0 34.0 31.0 34.0 5 33.15082916441022 34.0 33.0 34.0 33.0 34.0 6 36.63570649606446 38.0 37.0 38.0 34.0 38.0 7 37.17566749649756 38.0 38.0 38.0 36.0 38.0 8 37.131051151517454 38.0 38.0 38.0 36.0 38.0 9 37.266818139610855 38.0 38.0 38.0 36.0 38.0 10-11 37.368272168041095 38.0 38.0 38.0 37.0 38.0 12-13 37.398913922384494 38.0 38.0 38.0 37.0 38.0 14-15 37.419992090285966 38.0 38.0 38.0 37.0 38.0 16-17 37.43233568365481 38.0 38.0 38.0 37.0 38.0 18-19 37.43890686328666 38.0 38.0 38.0 37.0 38.0 20-21 37.4466292044704 38.0 38.0 38.0 37.0 38.0 22-23 37.461157539844265 38.0 38.0 38.0 37.0 38.0 24-25 37.47016294929645 38.0 38.0 38.0 37.0 38.0 26-27 37.43905758536137 38.0 38.0 38.0 37.0 38.0 28-29 37.418183679632286 38.0 38.0 38.0 37.0 38.0 30-31 37.417204274831086 38.0 38.0 38.0 37.0 38.0 32-33 37.410583939325385 38.0 38.0 38.0 37.0 38.0 34-35 37.38570362222704 38.0 38.0 38.0 37.0 38.0 36-37 37.361916764091866 38.0 38.0 38.0 37.0 38.0 38-39 37.35240486901682 38.0 38.0 38.0 37.0 38.0 40-41 37.34204430806672 38.0 38.0 38.0 37.0 38.0 42-43 37.30270565831735 38.0 38.0 38.0 37.0 38.0 44-45 37.25956995321163 38.0 38.0 38.0 37.0 38.0 46-47 37.23239483052669 38.0 38.0 38.0 37.0 38.0 48-49 37.191621030383324 38.0 38.0 38.0 37.0 38.0 50-51 37.16271134579213 38.0 38.0 38.0 37.0 38.0 52-53 37.12614976323624 38.0 38.0 38.0 36.5 38.0 54-55 37.11293073444668 38.0 38.0 38.0 36.0 38.0 56-57 37.06842534205951 38.0 38.0 38.0 36.0 38.0 58-59 37.042045596879575 38.0 38.0 38.0 36.0 38.0 60-61 37.06617124837791 38.0 38.0 38.0 36.0 38.0 62-63 37.07775140958735 38.0 38.0 38.0 36.0 38.0 64-65 37.08123054962489 38.0 38.0 38.0 36.0 38.0 66-67 37.07249913928783 38.0 38.0 38.0 36.0 38.0 68-69 37.03006991737786 38.0 38.0 38.0 36.0 38.0 70-71 37.025579591707235 38.0 38.0 38.0 36.0 38.0 72-73 37.03631631428084 38.0 38.0 38.0 36.0 38.0 74-75 37.04845819416997 38.0 38.0 38.0 36.0 38.0 76-77 37.0268180329771 38.0 38.0 38.0 36.0 38.0 78-79 36.98354397117669 38.0 38.0 38.0 36.0 38.0 80-81 36.933116260963004 38.0 38.0 38.0 36.0 38.0 82-83 36.88693186446586 38.0 38.0 38.0 35.0 38.0 84-85 36.85542325137685 38.0 38.0 38.0 35.0 38.0 86-87 36.87706395932872 38.0 38.0 38.0 35.0 38.0 88-89 36.831995681887385 38.0 38.0 38.0 35.0 38.0 90-91 36.84170001982896 38.0 38.0 38.0 35.0 38.0 92-93 36.82882109221755 38.0 38.0 38.0 35.0 38.0 94-95 36.84399444679803 38.0 38.0 38.0 35.0 38.0 96-97 36.838194649700995 38.0 38.0 38.0 35.0 38.0 98-99 36.820571543396866 38.0 38.0 38.0 35.0 38.0 100 35.25281533452693 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 4.0 20 19.0 21 68.0 22 316.0 23 961.0 24 2416.0 25 5050.0 26 9440.0 27 15133.0 28 23066.0 29 33960.0 30 46767.0 31 61106.0 32 78837.0 33 104111.0 34 150885.0 35 260064.0 36 670326.0 37 4439074.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.436717882121535 19.722519504866813 14.176400178663293 24.66436243434836 2 14.387555323878445 20.420719909885438 42.68669039285821 22.505034373377907 3 18.130252716683593 25.65680192232973 30.196392869784734 26.016552491201946 4 12.426902492317677 17.843239089491124 39.225049076214916 30.50480934197628 5 13.623516589727133 37.09813467660656 35.47908331362118 13.799265420045126 6 29.989169046245735 37.62312754295273 18.916264120737345 13.471439290064193 7 26.75938609232337 32.56392668840539 22.98981768346368 17.686869535807553 8 24.291429923119207 36.640072766658015 21.19235719645032 17.87614011377246 9 25.62325428815624 17.042925957078786 21.332810537609774 36.0010092171552 10-11 24.201589940633088 26.637139665758664 28.900431137026477 20.260839256581768 12-13 25.158694144846045 24.177088127227783 28.959228711380835 21.70498901654533 14-15 22.306901649110987 25.554188318972265 26.713440956051947 25.425469075864797 16-17 21.828955314521274 28.64423807493692 27.381505095902742 22.145301514639073 18-19 21.808282968494666 27.750184526105105 29.15972505102003 21.2818074543802 20-21 22.62536428044144 26.95768886432276 29.04305433259146 21.373892522644333 22-23 22.34052783475876 26.824419658906024 28.914573658792996 21.92047884754222 24-25 22.122084675727116 26.923843091194204 28.954161878984973 21.999910354093704 26-27 22.024191559731918 27.12371438909702 28.917498036151756 21.93459601501931 28-29 21.9678469652595 27.140561090876204 28.98458109245453 21.907010851409765 30-31 22.277738406836896 26.96247219229927 28.85236502368379 21.907424377180043 32-33 22.054451517327326 27.099750712683594 28.825423821163916 22.020373948825164 34-35 22.188535215079327 27.130504374595883 28.825321563218015 21.855638847106775 36-37 22.193052063217916 27.03761599328582 28.765325771497686 22.00400617199858 38-39 22.015678672089336 27.21672056921365 28.855628563486018 21.911972195211 40-41 22.259670301568974 27.070788721779277 28.75800256968088 21.911538406970873 42-43 22.173067240672122 27.11331408065928 28.594477611628484 22.11914106704011 44-45 22.21963552875215 27.261048491208008 28.44356198739079 22.075753992649055 46-47 22.276969576118947 27.203674334351867 28.22960875749367 22.289747332035514 48-49 22.190606945243967 27.30125025806443 28.267782367076194 22.240360429615407 50-51 22.223080215290135 27.46012706947254 28.110873360133283 22.205919355104044 52-53 22.39511781727912 27.420049811463738 27.93405767820476 22.250774693052385 54-55 22.317506177442596 27.293423755452572 28.023949287254663 22.365120779850173 56-57 22.34747055480522 27.410125143515845 27.978804521640694 22.26359978003824 58-59 22.287573126408606 27.470234009148943 28.00749456051192 22.234698303930532 60-61 22.336822537633587 27.392841576497766 28.058140489304723 22.21219539656392 62-63 22.271592008114546 27.40910055905456 28.057934092892694 22.2613733399382 64-65 22.222974893149537 27.34618389972825 28.041740634820634 22.389100572301583 66-67 22.327898185532256 27.380800162804853 27.91484039172997 22.37646125993292 68-69 22.25963379846911 27.33551408017631 28.040276219320955 22.364575902033625 70-71 22.31726066262534 27.126619198638817 28.07974581725054 22.476374321485302 72-73 22.34766256357268 27.241899667739446 28.02577507714038 22.3846626915475 74-75 22.240086508539996 27.381553221694777 27.9523445721561 22.426015697609127 76-77 22.37729358271142 27.330817609556757 27.835860239818295 22.456028567913528 78-79 22.336590272705724 27.3535766611422 27.81783097855191 22.492002087600167 80-81 22.412911352937208 27.38357450657866 27.75891002344218 22.44460411704195 82-83 22.42409252218786 27.347267247834107 27.847523401219163 22.38111682875887 84-85 22.539887128692136 27.316971530882554 27.767064194247542 22.376077146177767 86-87 22.318769947701213 27.362352272042507 27.856151371534953 22.462726408721327 88-89 22.435958371312527 27.388983081803715 27.752152130683612 22.422906416200146 90-91 22.480890830891884 27.39062062219314 27.764420208995656 22.364068337919317 92-93 22.454585574641385 27.355181363523783 27.790356889340412 22.399876172494423 94-95 22.36591511899735 27.48267686762218 27.743253872968292 22.40815414041218 96-97 22.4544404429641 27.58659136914116 27.782429096737037 22.1765390911577 98-99 23.583505809399867 29.507520433607436 27.978773768855667 18.930199988137026 100 22.46151707004595 30.298045652326167 21.916395140413343 25.324042137214548 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 907.0 1 873.0 2 1153.0 3 1613.5 4 2177.5 5 3132.0 6 3917.5 7 4920.0 8 6060.0 9 6719.0 10 6732.0 11 6648.5 12 7433.0 13 9332.5 14 12985.5 15 17240.0 16 20430.5 17 22226.5 18 22197.0 19 20646.0 20 18800.0 21 17628.5 22 18285.5 23 21131.5 24 26050.5 25 33669.5 26 44170.0 27 55703.0 28 66429.5 29 77934.0 30 90072.0 31 103095.5 32 117376.0 33 131150.5 34 144961.0 35 158790.5 36 174980.5 37 189629.5 38 199635.5 39 208320.5 40 218428.0 41 227244.5 42 232988.5 43 239780.0 44 245467.0 45 250443.0 46 253571.5 47 255423.5 48 255519.5 49 251628.0 50 246735.5 51 239793.5 52 229475.5 53 216873.0 54 203193.5 55 188008.0 56 171898.0 57 155128.5 58 137730.5 59 119927.0 60 100413.0 61 81160.5 62 63924.0 63 49078.0 64 37147.5 65 27761.0 66 20449.5 67 15289.0 68 11581.5 69 8371.5 70 5909.5 71 4061.5 72 2657.0 73 1663.0 74 1046.5 75 660.5 76 428.5 77 267.0 78 163.5 79 113.0 80 85.0 81 58.0 82 40.5 83 28.5 84 16.0 85 8.0 86 5.0 87 4.5 88 4.0 89 2.0 90 1.5 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.011369790314633107 3 2.541681888517088E-4 4 0.0011691736687178605 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 8.472657716828867E-6 24-25 5.083886241266836E-5 26-27 6.270716668344507E-4 28-29 0.0014833721609528302 30-31 7.211433634703387E-4 32-33 7.56517997563162E-4 34-35 0.0010566133429132942 36-37 0.0 38-39 2.4935580218277473E-4 40-41 9.169932517947548E-4 42-43 4.178281709502179E-4 44-45 0.0 46-47 0.0 48-49 0.001863825851246721 50-51 0.0037214938291969166 52-53 0.0 54-55 0.00398749550608344 56-57 0.04019358422446438 58-59 0.05744607124815784 60-61 0.030305270160396188 62-63 0.007057270885417659 64-65 0.0 66-67 0.0 68-69 2.906714238597832E-5 70-71 0.003355105982222438 72-73 0.007652229756075549 74-75 0.005500148314687797 76-77 0.00661865226737625 78-79 0.010331273241555326 80-81 0.01105224561722533 82-83 0.04313338041620136 84-85 0.025593665750912396 86-87 0.0013003168438709565 88-89 0.0015486940930777968 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 39.0 20-21 162.0 22-23 311.0 24-25 461.0 26-27 1256.0 28-29 3447.0 30-31 10653.0 32-33 13419.0 34-35 18386.0 36-37 29578.0 38-39 35614.0 40-41 34979.0 42-43 39662.0 44-45 47183.0 46-47 48178.0 48-49 45406.0 50-51 41643.0 52-53 40734.0 54-55 44133.0 56-57 45627.0 58-59 45192.0 60-61 45180.0 62-63 43703.0 64-65 46005.0 66-67 48101.0 68-69 48634.0 70-71 48524.0 72-73 45866.0 74-75 46806.0 76-77 48206.0 78-79 49698.0 80-81 49569.0 82-83 47104.0 84-85 46706.0 86-87 47701.0 88-89 50065.0 90-91 50592.0 92-93 50536.0 94-95 58607.0 96-97 183743.0 98-99 402168.0 100-101 3898027.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.34784117496113 #Duplication Level Percentage of deduplicated Percentage of total 1 90.7715116018234 79.28695578607213 2 6.759893397352003 11.809241896631423 3 1.4765613465838268 3.869233379594725 4 0.49393743437575255 1.7257747427288406 5 0.22005037283596007 0.9610462508483211 6 0.10448601733834686 0.5475976828484495 7 0.05432039304107064 0.33213383447390316 8 0.03511337144689277 0.24536617538084837 9 0.017812212034433346 0.14002724409825734 >10 0.06400882344115989 0.830694577600725 >50 0.0015630693972978158 0.09198535626829378 >100 6.861101902822401E-4 0.11769622375991942 >500 2.79250701422769E-5 0.01714753797885838 >1k 2.792506943893975E-5 0.025099311715266862 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.6944545923447252E-5 0.0 0.0 0.0 3 0.0 1.6944545923447252E-5 0.0 1.6944545923447252E-5 0.0 4 0.0 1.6944545923447252E-5 0.0 3.3889091846894504E-5 0.0 5 0.0 1.6944545923447252E-5 0.0 5.083363777034176E-5 0.0 6 0.0 1.6944545923447252E-5 0.0 5.083363777034176E-5 0.0 7 0.0 1.6944545923447252E-5 0.0 5.083363777034176E-5 0.0 8 0.0 3.3889091846894504E-5 0.0 8.472272961723626E-5 0.0 9 0.0 8.472272961723626E-5 0.0 1.0166727554068352E-4 0.0 10-11 2.5416818885170876E-5 8.472272961723626E-5 0.0 1.0166727554068352E-4 0.0 12-13 5.083363777034176E-5 8.472272961723626E-5 0.0 1.270840944258544E-4 0.0 14-15 6.777818369378901E-5 9.319500257895989E-5 0.0 1.3555636738757802E-4 2.5416818885170876E-5 16-17 8.472272961723626E-5 1.0166727554068352E-4 0.0 1.4402864034930164E-4 3.3889091846894504E-5 18-19 8.472272961723626E-5 1.1861182146413076E-4 0.0 1.609731862727489E-4 3.3889091846894504E-5 20-21 8.472272961723626E-5 1.5250091331102527E-4 0.0 1.6944545923447253E-4 3.3889091846894504E-5 22-23 8.472272961723626E-5 1.5250091331102527E-4 0.0 1.7791773219619615E-4 5.083363777034175E-5 24-25 8.472272961723626E-5 1.5250091331102527E-4 0.0 2.202790970048143E-4 6.777818369378901E-5 26-27 8.472272961723626E-5 1.5250091331102527E-4 0.0 2.965295536603269E-4 6.777818369378901E-5 28-29 8.472272961723626E-5 1.609731862727489E-4 0.0 4.829195588182467E-4 6.777818369378901E-5 30-31 1.1861182146413077E-4 2.0333455108136704E-4 0.0 0.0012708409442585438 6.777818369378901E-5 32-33 1.1861182146413077E-4 2.0333455108136704E-4 0.0 0.003253352817301872 6.777818369378901E-5 34-35 1.1861182146413077E-4 2.3722364292826152E-4 0.0 0.006311843356484102 6.777818369378901E-5 36-37 1.1861182146413077E-4 2.7111273477515603E-4 0.0 0.010437840288843508 6.777818369378901E-5 38-39 1.1861182146413077E-4 2.880572806986033E-4 0.0 0.01665648864274865 6.777818369378901E-5 40-41 1.1861182146413077E-4 3.3889091846894505E-4 0.0 0.023264861552893076 6.777818369378901E-5 42-43 1.1861182146413077E-4 3.473631914306687E-4 0.0 0.029542815817530287 6.777818369378901E-5 44-45 1.1861182146413077E-4 3.558354643923923E-4 0.0 0.036701886470186754 6.777818369378901E-5 46-47 1.1861182146413077E-4 3.558354643923923E-4 0.0 0.044555683505704546 6.777818369378901E-5 48-49 1.1861182146413077E-4 3.558354643923923E-4 0.0 0.052206145990140986 6.777818369378901E-5 50-51 1.1861182146413077E-4 4.2361364808618133E-4 0.0 0.05987355302050087 6.777818369378901E-5 52-53 1.1861182146413077E-4 4.405581940096286E-4 0.0 0.06695637321650182 7.625045665551264E-5 54-55 1.1861182146413077E-4 4.405581940096286E-4 0.0 0.07459836342797653 9.319500257895989E-5 56-57 1.1861182146413077E-4 4.5750273993307584E-4 0.0 0.08221493682056608 1.0166727554068352E-4 58-59 1.1861182146413077E-4 4.5750273993307584E-4 0.0 0.08873858700109326 1.1861182146413077E-4 60-61 1.270840944258544E-4 4.5750273993307584E-4 0.0 0.09557571128120423 1.3555636738757802E-4 62-63 1.3555636738757802E-4 4.5750273993307584E-4 0.0 0.10161644190291316 1.3555636738757802E-4 64-65 1.3555636738757802E-4 5.422254695503121E-4 0.0 0.10814856435640209 1.3555636738757802E-4 66-67 1.3555636738757802E-4 5.422254695503121E-4 0.0 0.11464679771804412 1.3555636738757802E-4 68-69 1.3555636738757802E-4 5.591700154737593E-4 0.0 0.12092475198268132 1.3555636738757802E-4 70-71 1.3555636738757802E-4 5.591700154737593E-4 0.0 0.12599117121379205 1.4402864034930164E-4 72-73 1.3555636738757802E-4 5.591700154737593E-4 0.0 0.1301425849650366 1.5250091331102527E-4 74-75 1.3555636738757802E-4 5.676422884354829E-4 0.0 0.13342135460122367 1.5250091331102527E-4 76-77 1.3555636738757802E-4 6.100036532441011E-4 0.0 0.13670859651037243 1.5250091331102527E-4 78-79 1.3555636738757802E-4 6.100036532441011E-4 0.0 0.13868263611045406 1.5250091331102527E-4 80-81 1.3555636738757802E-4 6.100036532441011E-4 0.0 0.13934347340146847 1.6944545923447253E-4 82-83 1.3555636738757802E-4 6.100036532441011E-4 0.0 0.13991111568990394 1.8639000515791978E-4 84-85 1.3555636738757802E-4 6.269481991675483E-4 0.0 0.14029236797318154 1.8639000515791978E-4 86-87 1.3555636738757802E-4 6.269481991675483E-4 0.0 0.1403855629757605 1.8639000515791978E-4 88 1.3555636738757802E-4 6.777818369378901E-4 0.0 0.1403855629757605 1.8639000515791978E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7230 0.0 51.537067 1 GTATCAA 13300 0.0 37.92294 1 TCAACGC 15630 0.0 31.50091 4 ATCAACG 15830 0.0 31.021852 3 CAACGCA 16060 0.0 30.656965 5 TATCAAC 16450 0.0 30.192993 2 AACGCAG 16480 0.0 29.901615 6 ACGCAGA 19155 0.0 25.748178 7 CGCAGAG 19270 0.0 25.572319 8 GTGGTAT 3455 0.0 22.287651 1 TGGTATC 3295 0.0 22.201408 2 GCAGAGT 23010 0.0 21.267126 9 GAGTACT 13260 0.0 20.258883 12-13 GTACATG 16845 0.0 19.707455 1 TACATGG 16590 0.0 19.597788 2 CAGAGTA 22280 0.0 19.074451 10-11 ACATGGG 16995 0.0 18.776922 3 AGAGTAC 20565 0.0 18.158707 10-11 GTACTTT 15180 0.0 17.725048 14-15 CATGGGG 12405 0.0 16.034777 4 >>END_MODULE