##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140118_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4510750 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.308805852685254 25.0 18.0 33.0 18.0 33.0 2 29.28538203181289 30.0 27.0 33.0 25.0 33.0 3 28.208690794213823 29.0 27.0 31.0 18.0 33.0 4 31.604987418943633 33.0 31.0 33.0 29.0 33.0 5 32.13249370947182 33.0 33.0 33.0 31.0 33.0 6 36.48645546749432 38.0 37.0 38.0 34.0 38.0 7 36.65297034861165 38.0 37.0 38.0 34.0 38.0 8 36.911599844815164 38.0 38.0 38.0 35.0 38.0 9 37.280243861885495 38.0 38.0 38.0 36.0 38.0 10-11 37.28580457795267 38.0 38.0 38.0 36.5 38.0 12-13 37.396544920467775 38.0 38.0 38.0 37.0 38.0 14-15 37.34915712464668 38.0 38.0 38.0 36.5 38.0 16-17 37.43656753311534 38.0 38.0 38.0 37.0 38.0 18-19 37.45363354209389 38.0 38.0 38.0 37.0 38.0 20-21 37.472605804313105 38.0 38.0 38.0 37.0 38.0 22-23 37.49386262156027 38.0 38.0 38.0 37.0 38.0 24-25 37.501972334317344 38.0 38.0 38.0 37.0 38.0 26-27 37.46378189079462 38.0 38.0 38.0 37.0 38.0 28-29 37.43795578706688 38.0 38.0 38.0 37.0 38.0 30-31 37.44600340932021 38.0 38.0 38.0 37.0 38.0 32-33 37.435535926494794 38.0 38.0 38.0 37.0 38.0 34-35 37.40339616136171 38.0 38.0 38.0 37.0 38.0 36-37 37.37812211245251 38.0 38.0 38.0 37.0 38.0 38-39 37.35551380443701 38.0 38.0 38.0 37.0 38.0 40-41 37.36766531888561 38.0 38.0 38.0 37.0 38.0 42-43 37.33203121550149 38.0 38.0 38.0 37.0 38.0 44-45 37.28907698666691 38.0 38.0 38.0 37.0 38.0 46-47 37.25694565767933 38.0 38.0 38.0 37.0 38.0 48-49 37.2054630090215 38.0 38.0 38.0 37.0 38.0 50-51 37.17090708703297 38.0 38.0 38.0 37.0 38.0 52-53 37.137429703175016 38.0 38.0 38.0 36.5 38.0 54-55 37.119880949977684 38.0 38.0 38.0 36.0 38.0 56-57 37.07563663392011 38.0 38.0 38.0 36.0 38.0 58-59 37.042534786648964 38.0 38.0 38.0 36.0 38.0 60-61 37.06369440762893 38.0 38.0 38.0 36.0 38.0 62-63 37.07799485475108 38.0 38.0 38.0 36.0 38.0 64-65 37.08632149680133 38.0 38.0 38.0 36.0 38.0 66-67 37.078831402027824 38.0 38.0 38.0 36.0 38.0 68-69 37.03998728940489 38.0 38.0 38.0 36.0 38.0 70-71 37.03517662842246 38.0 38.0 38.0 36.0 38.0 72-73 37.05059303285192 38.0 38.0 38.0 36.0 38.0 74-75 37.06273348089007 38.0 38.0 38.0 36.0 38.0 76-77 37.043491692721894 38.0 38.0 38.0 36.0 38.0 78-79 37.004855262464034 38.0 38.0 38.0 36.0 38.0 80-81 36.95625218845362 38.0 38.0 38.0 36.0 38.0 82-83 36.91215054531434 38.0 38.0 38.0 35.5 38.0 84-85 36.88893222370159 38.0 38.0 38.0 35.0 38.0 86-87 36.91275140948602 38.0 38.0 38.0 35.0 38.0 88-89 36.86901762541344 38.0 38.0 38.0 35.0 38.0 90-91 36.88361894818594 38.0 38.0 38.0 35.0 38.0 92-93 36.8697122204406 38.0 38.0 38.0 35.0 38.0 94-95 36.88001498837549 38.0 38.0 38.0 35.0 38.0 96-97 36.87504387256389 38.0 38.0 38.0 35.0 38.0 98-99 36.86221956343043 38.0 38.0 38.0 35.0 38.0 100 35.30906692650919 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 4.0 20 24.0 21 65.0 22 269.0 23 720.0 24 1838.0 25 3912.0 26 6982.0 27 11556.0 28 18156.0 29 26625.0 30 36407.0 31 46865.0 32 60233.0 33 82582.0 34 128822.0 35 252895.0 36 849348.0 37 2983444.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.725943579227405 18.581499750595796 11.450113617469379 22.242443052707422 2 14.717394673288824 20.083835253329276 41.78546874823329 23.413301325148602 3 19.385094787024048 25.246899402847955 29.683019031893632 25.684986778234364 4 12.921401869946203 17.67162123635306 38.57139816765313 30.8355787260476 5 13.803979382586046 37.43446211827302 34.93095383251122 13.830604666629718 6 30.49206894640581 37.15637089175858 18.51853904561326 13.833021116222358 7 27.024175580557557 32.54993072105526 22.320501025328383 18.105392673058805 8 24.339721775757912 36.88242531729757 20.77477137948235 18.00308152746217 9 25.39327162888655 17.50292080031037 21.123604722052875 35.98020284875021 10-11 24.478190988194868 26.766480075375494 28.241002050656768 20.514326885772878 12-13 25.286116499473483 24.081327938812834 28.620174028709194 22.012381533004486 14-15 22.38582275674777 25.548013079864766 26.32501247021005 25.74115169317741 16-17 21.974394502022946 28.822036246743888 26.987862328881008 22.215706922352158 18-19 21.97143490550352 27.74040902288976 28.839184171146705 21.448971900460013 20-21 22.73553844238738 26.90264896191637 28.802280093861437 21.55953250183481 22-23 22.395539056369373 26.85197101756769 28.74934417286855 22.00314575319439 24-25 22.26143442765614 26.94368142375411 28.861682264955324 21.933201883634425 26-27 22.117824976065467 27.21825576992692 28.761020001895915 21.9028992521117 28-29 21.990248782484187 27.18191810175116 28.806363135251562 22.021469980513093 30-31 22.47772261893316 27.00217761108492 28.727690699733255 21.792409070248663 32-33 22.232421598139098 27.165574146607092 28.743246993205435 21.858757262048375 34-35 22.268966356051635 27.22513024741709 28.782586960863842 21.723316435667428 36-37 22.30967329025966 27.055359050849404 28.73126133910836 21.903706319782575 38-39 21.98388278256161 27.131611168325247 28.89043405262346 21.99407199648968 40-41 22.26350332010735 26.992835736923176 28.809287226150694 21.93437371681878 42-43 22.27107378801252 26.991329218111225 28.667432262834442 22.07016473104182 44-45 22.176936491229 27.206788918203074 28.5734891216668 22.04278546890113 46-47 22.355911910137387 27.076274627641432 28.225974490044525 22.341838972176653 48-49 22.254306885270918 27.177009787154923 28.283273418862358 22.285409908711806 50-51 22.14559518932843 27.412132669021815 28.23247663317155 22.209795508478205 52-53 22.30113152198763 27.38114565487837 28.226007488056815 22.09171533507718 54-55 22.288767866612698 27.290229659997024 28.09985394023567 22.321148533154613 56-57 22.358083326787714 27.512566385839488 27.909989933398517 22.21936035397428 58-59 22.167457357921464 27.631471900002552 28.145362525970167 22.055708216105817 60-61 22.310264611805756 27.742176539065174 27.986440933518576 21.9611179156105 62-63 22.088182830574585 27.8717908133437 27.963143923772154 22.076882432309567 64-65 22.04917914535204 27.805509110961758 27.976565061206536 22.16874668247966 66-67 22.200643764976093 27.888497557146312 27.758173546509585 22.152685131368006 68-69 22.121471024365743 27.758544469277467 27.900506178894812 22.219478327461974 70-71 22.114581858576436 27.521555878874892 27.991178212247736 22.372684050300933 72-73 22.304891189752706 27.40230491706154 27.985002127954072 22.307801765231687 74-75 22.106799800018162 27.511867398263412 27.9762954721231 22.405037329595327 76-77 22.38168896172513 27.372547946078075 27.80417813708062 22.441584955116173 78-79 22.343781792565448 27.530535472467736 27.705067525748824 22.420615209217992 80-81 22.336905991648976 27.496924841449182 27.66875833309313 22.49741083380871 82-83 22.417434123258673 27.427734554766893 27.826527739427508 22.328303582546926 84-85 22.55036456248406 27.411584518368475 27.73632119290109 22.301729726246368 86-87 22.335409608618413 27.494673883567632 27.795462254846804 22.37445425296715 88-89 22.456073124397875 27.52031113546453 27.689229373281222 22.334386366856375 90-91 22.503712116680248 27.47099746477948 27.714029821068532 22.311260597471744 92-93 22.52187350846324 27.49133889204483 27.70404222861921 22.28274537087272 94-95 22.396646993482385 27.643788056992285 27.695637786787547 22.263927162737787 96-97 22.48771828007194 27.664258685930516 27.81368294508189 22.034340088915652 98-99 23.54134586098195 29.629888072802185 27.96069267939108 18.868073386824783 100 22.528499482552686 30.44019246248424 21.90181329224773 25.129494762715343 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 663.0 1 667.0 2 911.0 3 1266.0 4 1613.0 5 2227.0 6 2869.0 7 3615.5 8 4918.0 9 5803.0 10 5617.5 11 5347.5 12 5819.0 13 7288.0 14 9878.5 15 12812.5 16 15369.5 17 17423.5 18 17976.0 19 16747.5 20 14946.0 21 13536.5 22 13317.0 23 14904.5 24 18527.5 25 24062.0 26 31694.0 27 40615.5 28 49079.0 29 58188.0 30 67614.5 31 76838.5 32 86978.0 33 97083.0 34 107455.5 35 118403.5 36 130031.5 37 140286.5 38 147619.5 39 154347.5 40 162700.5 41 170051.0 42 175285.0 43 180551.0 44 187762.0 45 196842.0 46 199342.0 47 197837.5 48 197300.5 49 194302.0 50 189541.0 51 183917.5 52 176502.5 53 166939.0 54 157133.0 55 146884.0 56 135263.0 57 121386.0 58 107890.5 59 95027.0 60 80566.5 61 65564.5 62 51517.5 63 39809.0 64 30083.0 65 22451.5 66 16638.5 67 12603.0 68 9609.5 69 6946.5 70 4913.5 71 3492.5 72 2397.0 73 1571.0 74 1020.5 75 688.5 76 468.0 77 283.5 78 180.5 79 121.5 80 81.0 81 51.5 82 36.0 83 22.0 84 11.5 85 6.5 86 6.0 87 3.5 88 1.0 89 1.0 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005254115169317741 3 1.3301557390677825E-4 4 7.09416394169484E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.108518163956931E-5 24-25 4.43437447272516E-5 26-27 7.539251505327977E-4 28-29 0.0013641758331703901 30-31 7.327484372474239E-4 32-33 5.674529673283948E-4 34-35 0.0010712030927418625 36-37 0.0 38-39 1.6906852933598222E-4 40-41 8.620634896148573E-4 42-43 3.881623719734894E-4 44-45 0.0 46-47 0.0 48-49 0.0015562971174803058 50-51 0.003573764745317955 52-53 0.0 54-55 0.003431658930886389 56-57 0.04013704639748634 58-59 0.05883310935167321 60-61 0.030696489772587827 62-63 0.006599687853268338 64-65 0.0 66-67 0.0 68-69 6.335309696546268E-5 70-71 0.003468891911760094 72-73 0.008136013449127732 74-75 0.006014227758152899 76-77 0.007014354026686656 78-79 0.009960124971680044 80-81 0.011166522203416232 82-83 0.04378134438492082 84-85 0.025551890812621103 86-87 8.676512350533303E-4 88-89 0.001779664964166863 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 35.0 20-21 128.0 22-23 306.0 24-25 375.0 26-27 1094.0 28-29 3028.0 30-31 9351.0 32-33 11859.0 34-35 16235.0 36-37 25209.0 38-39 28172.0 40-41 28132.0 42-43 31051.0 44-45 36488.0 46-47 37466.0 48-49 34626.0 50-51 30328.0 52-53 27867.0 54-55 29773.0 56-57 30835.0 58-59 32840.0 60-61 34085.0 62-63 32776.0 64-65 34848.0 66-67 38048.0 68-69 38540.0 70-71 43237.0 72-73 33376.0 74-75 32902.0 76-77 34057.0 78-79 35002.0 80-81 34796.0 82-83 32695.0 84-85 32369.0 86-87 33801.0 88-89 35316.0 90-91 35966.0 92-93 35239.0 94-95 41620.0 96-97 138550.0 98-99 309327.0 100-101 3009002.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.4059333700414 #Duplication Level Percentage of deduplicated Percentage of total 1 91.75914479334766 81.12052840692672 2 6.142339788580971 10.860385641708868 3 1.220370937324208 3.236640953154567 4 0.4116016037345699 1.4555209581904225 5 0.1864670000549278 0.8242394591283725 6 0.09801578499463784 0.5199106174468954 7 0.05524389404260485 0.3418721611082505 8 0.03158084788566577 0.22335474671596645 9 0.02018033050478918 0.16056548585926256 >10 0.07306966998032735 0.9933644207614118 >50 0.0011242201684429681 0.0693444600574917 >100 8.256309152476411E-4 0.151749062544058 >500 0.0 0.0 >1k 3.5498465897766795E-5 0.042523626397649714 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 2.2169262317796375E-5 0.0 0.0 0.0 5 0.0 2.2169262317796375E-5 0.0 0.0 0.0 6 2.2169262317796375E-5 2.2169262317796375E-5 0.0 0.0 2.2169262317796375E-5 7 2.2169262317796375E-5 2.2169262317796375E-5 0.0 2.2169262317796375E-5 2.2169262317796375E-5 8 2.2169262317796375E-5 2.2169262317796375E-5 0.0 2.2169262317796375E-5 2.2169262317796375E-5 9 2.2169262317796375E-5 4.433852463559275E-5 0.0 2.2169262317796375E-5 4.433852463559275E-5 10-11 2.2169262317796375E-5 4.433852463559275E-5 0.0 2.2169262317796375E-5 4.433852463559275E-5 12-13 2.2169262317796375E-5 4.433852463559275E-5 0.0 2.2169262317796375E-5 4.433852463559275E-5 14-15 2.2169262317796375E-5 6.650778695338912E-5 0.0 2.2169262317796375E-5 6.650778695338912E-5 16-17 2.2169262317796375E-5 6.650778695338912E-5 0.0 2.2169262317796375E-5 1.1084631158898187E-4 18-19 2.2169262317796375E-5 7.75924181122873E-5 0.0 2.2169262317796375E-5 1.1084631158898187E-4 20-21 2.2169262317796375E-5 1.3301557390677825E-4 0.0 2.2169262317796375E-5 1.1084631158898187E-4 22-23 2.2169262317796375E-5 1.3301557390677825E-4 0.0 3.325389347669456E-5 1.1084631158898187E-4 24-25 2.2169262317796375E-5 1.4410020506567644E-4 0.0 6.650778695338912E-5 1.1084631158898187E-4 26-27 2.2169262317796375E-5 1.5518483622457464E-4 0.0 1.9952336086016738E-4 1.1084631158898187E-4 28-29 4.433852463559275E-5 1.6626946738347283E-4 0.0 6.872471318516877E-4 1.1084631158898187E-4 30-31 4.433852463559275E-5 1.9952336086016738E-4 0.0 0.002150418444826248 1.1084631158898187E-4 32-33 6.650778695338912E-5 1.9952336086016738E-4 0.0 0.005243030538158843 1.3301557390677825E-4 34-35 6.650778695338912E-5 2.660311478135565E-4 0.0 0.009011805132184227 1.3301557390677825E-4 36-37 6.650778695338912E-5 3.325389347669456E-4 0.0 0.015884276450701104 1.3301557390677825E-4 38-39 6.650778695338912E-5 3.657928282436402E-4 0.0 0.034960926675164886 1.3301557390677825E-4 40-41 6.650778695338912E-5 4.2121598403813116E-4 0.0 0.0556891869423045 1.5518483622457464E-4 42-43 6.650778695338912E-5 4.2121598403813116E-4 0.0 0.06631934822368785 1.5518483622457464E-4 44-45 6.650778695338912E-5 4.544698775148257E-4 0.0 0.07868979659701823 1.5518483622457464E-4 46-47 6.650778695338912E-5 4.8772377099152027E-4 0.0 0.09253450091448207 1.77354098542371E-4 48-49 6.650778695338912E-5 5.431469267860112E-4 0.0 0.10544809621459847 1.77354098542371E-4 50-51 6.650778695338912E-5 5.653161891038077E-4 0.0 0.11778529069445215 1.77354098542371E-4 52-53 6.650778695338912E-5 5.764008202627058E-4 0.0 0.15569472925788394 1.77354098542371E-4 54-55 6.650778695338912E-5 5.764008202627058E-4 0.0 0.20668403258881562 1.77354098542371E-4 56-57 6.650778695338912E-5 5.985700825805021E-4 0.0 0.27667239372609875 1.77354098542371E-4 58-59 6.650778695338912E-5 5.985700825805021E-4 0.0 0.32034584049215764 1.884387297012692E-4 60-61 6.650778695338912E-5 5.985700825805021E-4 0.0 0.33674000997616804 1.9952336086016738E-4 62-63 8.86770492711855E-5 5.985700825805021E-4 0.0 0.3504406140885662 1.9952336086016738E-4 64-65 8.86770492711855E-5 6.429086072160949E-4 0.0 0.35691403868536276 1.9952336086016738E-4 66-67 8.86770492711855E-5 6.429086072160949E-4 0.0 0.3622124923793161 1.9952336086016738E-4 68-69 8.86770492711855E-5 6.650778695338912E-4 0.0 0.36796541595078425 1.9952336086016738E-4 70-71 8.86770492711855E-5 6.650778695338912E-4 0.0 0.3726209610375215 2.2169262317796375E-4 72-73 1.1084631158898187E-4 6.650778695338912E-4 0.0 0.37578008091780746 2.2169262317796375E-4 74-75 1.1084631158898187E-4 6.650778695338912E-4 0.0 0.3785844926010087 2.2169262317796375E-4 76-77 1.1084631158898187E-4 6.872471318516875E-4 0.0 0.3815440891204345 2.2169262317796375E-4 78-79 1.1084631158898187E-4 7.09416394169484E-4 0.0 0.38329546084354044 2.2169262317796375E-4 80-81 1.1084631158898187E-4 7.09416394169484E-4 0.0 0.38384969240148537 2.3277725433686194E-4 82-83 1.1084631158898187E-4 7.09416394169484E-4 0.0 0.38432633154131796 2.4386188549576013E-4 84-85 1.1084631158898187E-4 7.09416394169484E-4 0.0 0.3844815163775425 2.4386188549576013E-4 86-87 1.1084631158898187E-4 7.537549188050768E-4 0.0 0.3846145319514493 2.4386188549576013E-4 88 1.1084631158898187E-4 8.202627057584659E-4 0.0 0.3846367012137671 2.4386188549576013E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6135 0.0 51.609844 1 GTATCAA 11060 0.0 36.636185 1 TCAACGC 12455 0.0 31.879393 4 TATCAAC 12710 0.0 31.610798 2 ATCAACG 12585 0.0 31.482088 3 CAACGCA 12825 0.0 30.892609 5 AACGCAG 13480 0.0 29.486742 6 ACGCAGA 15645 0.0 25.351587 7 CGCAGAG 15775 0.0 25.169788 8 TGGTATC 2560 0.0 24.903574 2 GTGGTAT 2865 0.0 24.04455 1 GATCAAC 1905 0.0 22.011341 1 CTTATAC 4550 0.0 21.722809 1 GCAGAGT 18485 0.0 21.549202 9 GAGTACT 10995 0.0 20.352015 12-13 TACATGG 13140 0.0 20.026043 2 GTACATG 13620 0.0 20.011412 1 CAGAGTA 17930 0.0 19.698708 10-11 ACATGGG 13355 0.0 19.28672 3 TATACAC 6215 0.0 19.207413 3 >>END_MODULE