##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140117_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4666887 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.08238296748989 25.0 18.0 33.0 18.0 33.0 2 29.091323616792092 30.0 27.0 32.0 25.0 33.0 3 27.955450817643538 29.0 25.0 31.0 18.0 33.0 4 31.569679960110456 33.0 31.0 33.0 29.0 33.0 5 32.156405758270985 33.0 33.0 33.0 31.0 33.0 6 36.499778117618874 38.0 37.0 38.0 34.0 38.0 7 36.72666983366 38.0 37.0 38.0 34.0 38.0 8 36.9650666493532 38.0 38.0 38.0 35.0 38.0 9 37.338223316741974 38.0 38.0 38.0 36.0 38.0 10-11 37.33680459801148 38.0 38.0 38.0 36.5 38.0 12-13 37.44362494742212 38.0 38.0 38.0 37.0 38.0 14-15 37.38730721356656 38.0 38.0 38.0 37.0 38.0 16-17 37.46899228543566 38.0 38.0 38.0 37.0 38.0 18-19 37.48651145828043 38.0 38.0 38.0 37.0 38.0 20-21 37.506963992133876 38.0 38.0 38.0 37.0 38.0 22-23 37.52167913057632 38.0 38.0 38.0 37.5 38.0 24-25 37.52726775366048 38.0 38.0 38.0 37.5 38.0 26-27 37.49377275341398 38.0 38.0 38.0 37.0 38.0 28-29 37.46410763283281 38.0 38.0 38.0 37.0 38.0 30-31 37.474054549277355 38.0 38.0 38.0 37.0 38.0 32-33 37.459980053727236 38.0 38.0 38.0 37.0 38.0 34-35 37.4159925302809 38.0 38.0 38.0 37.0 38.0 36-37 37.39827938698211 38.0 38.0 38.0 37.0 38.0 38-39 37.35188185234919 38.0 38.0 38.0 37.0 38.0 40-41 37.41303517098781 38.0 38.0 38.0 37.0 38.0 42-43 37.385279004763305 38.0 38.0 38.0 37.0 38.0 44-45 37.34750311844333 38.0 38.0 38.0 37.0 38.0 46-47 37.319730055271265 38.0 38.0 38.0 37.0 38.0 48-49 37.273625237119404 38.0 38.0 38.0 37.0 38.0 50-51 37.23299255406398 38.0 38.0 38.0 37.0 38.0 52-53 37.194988408879865 38.0 38.0 38.0 37.0 38.0 54-55 37.164012889606454 38.0 38.0 38.0 36.0 38.0 56-57 37.1091338723055 38.0 38.0 38.0 36.0 38.0 58-59 37.06192082830519 38.0 38.0 38.0 36.0 38.0 60-61 37.063096313946005 38.0 38.0 38.0 36.0 38.0 62-63 37.072448196836646 38.0 38.0 38.0 36.0 38.0 64-65 37.07739978762304 38.0 38.0 38.0 36.0 38.0 66-67 37.06386888663869 38.0 38.0 38.0 36.0 38.0 68-69 37.01475545683701 38.0 38.0 38.0 36.0 38.0 70-71 37.0110094338927 38.0 38.0 38.0 36.0 38.0 72-73 37.01920287536326 38.0 38.0 38.0 36.0 38.0 74-75 37.036280157953 38.0 38.0 38.0 36.0 38.0 76-77 37.02397073185777 38.0 38.0 38.0 36.0 38.0 78-79 36.99244743130455 38.0 38.0 38.0 36.0 38.0 80-81 36.95289253861509 38.0 38.0 38.0 36.0 38.0 82-83 36.91509410929609 38.0 38.0 38.0 35.5 38.0 84-85 36.89371272617545 38.0 38.0 38.0 35.0 38.0 86-87 36.91806786509207 38.0 38.0 38.0 35.0 38.0 88-89 36.880410421991115 38.0 38.0 38.0 35.0 38.0 90-91 36.89027215266796 38.0 38.0 38.0 35.0 38.0 92-93 36.88009359843857 38.0 38.0 38.0 35.0 38.0 94-95 36.89389916645037 38.0 38.0 38.0 35.0 38.0 96-97 36.891659052540064 38.0 38.0 38.0 35.0 38.0 98-99 36.87920350901746 38.0 38.0 38.0 35.0 38.0 100 35.38265417518509 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 8.0 20 45.0 21 99.0 22 348.0 23 871.0 24 1986.0 25 3818.0 26 6825.0 27 11462.0 28 17533.0 29 25666.0 30 34257.0 31 44119.0 32 57676.0 33 80406.0 34 127939.0 35 264715.0 36 947583.0 37 3041526.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.70404490187999 19.004017024624765 11.565803928828789 22.726134144666453 2 14.17012489923161 19.941641120103064 42.29572356311026 23.592510417555065 3 18.852710527251837 25.893241691769102 30.336940455696503 24.917107325282554 4 12.600999560303178 18.377055882637805 37.69832426655056 31.323620290508465 5 13.603093453944782 37.782466127849254 34.96971321568317 13.644727202522795 6 29.98529855126126 37.141010699423404 18.576022946345176 14.29766780297016 7 26.673283497114888 32.75946042833263 21.595980361212945 18.971275713339534 8 24.433953511194936 36.749914879018924 21.18720680402161 17.62892480576453 9 25.096065107211725 17.51396594775061 20.315040839857488 37.07492810518018 10-11 24.340904333016848 26.576998757415808 28.25781939866982 20.82427751089752 12-13 25.377773235135116 23.77732737047201 28.24800557630815 22.59689381808473 14-15 22.594493931393668 25.43487768184659 25.387512061037686 26.58311632572205 16-17 22.510594321225263 29.18355426218805 25.876113992046516 22.429737424540168 18-19 22.524907931132677 27.539149758714963 27.644851910920494 22.291090399231862 20-21 22.983177976220894 26.579303267733106 27.690014749845638 22.747504006200355 22-23 22.486754459555165 27.15054541090908 27.778809921003543 22.583890208532218 24-25 22.420348082426454 27.31941729388565 28.190609137817308 22.06962548587059 26-27 22.22776969589807 27.278331900027595 28.31680611258014 22.1770922914942 28-29 21.527387519240744 26.558090160424758 28.536796534940162 23.377725785394336 30-31 21.948915954781043 26.44120080175944 28.82410189505606 22.785781348403457 32-33 21.81492543093225 26.97630215518563 28.800446193505774 22.40832622037635 34-35 21.8831448674626 27.589688269449113 28.998238947575654 21.528927915512632 36-37 22.315786509064438 27.044752417761448 28.050094890637457 22.589366182536658 38-39 22.3333900496353 26.692254039183517 28.528107323956647 22.44624858722453 40-41 22.469488882603688 26.549300976331615 28.767479158688978 22.213730982375722 42-43 22.83721909826798 26.374728943806836 28.784808565596702 22.003243392328482 44-45 22.213981896003297 26.940521659419076 28.643117818736652 22.202378625840975 46-47 23.00679203063912 26.26837086183472 27.869623116156472 22.855213991369688 48-49 22.640378453474625 26.394030228831937 28.18146996823676 22.784121349456676 50-51 22.247611089110812 26.840565619534868 28.486175390759787 22.425647900594534 52-53 22.379459419528246 27.132756105691413 28.802981973325036 21.684802501455305 54-55 22.30996235287736 27.280400187719835 28.080736219670687 22.328901239732115 56-57 22.828772725148387 28.063922512501755 27.168060943122867 21.939243819226995 58-59 21.890062333579895 28.94922569260744 27.961145445059028 21.199566528753635 60-61 22.5556391209073 29.695481012301393 26.65754676999959 21.09133309679171 62-63 21.858987226123652 30.251142871308623 26.625712474421682 21.264157428146042 64-65 21.951419559050606 29.989083170035197 26.707499415582703 21.351997855331497 66-67 22.25491267978689 29.661600701513468 26.66318838662514 21.420298232074497 68-69 22.196407368261056 29.104478173475485 27.066322576373146 21.632791881890313 70-71 22.358829492168113 28.40110301837488 27.311619785239017 21.92844770421799 72-73 22.657294528908533 27.802772165114455 27.480612504609887 22.059320801367125 74-75 22.459568729619143 27.73981422570177 27.584608920921877 22.216008123757216 76-77 22.546793868672665 27.558179560300477 27.55558468174344 22.339441889283414 78-79 22.52797575022669 27.69923883814937 27.466307612835383 22.306477798788553 80-81 22.579618836888738 27.641708782974373 27.458729305884432 22.31994307425246 82-83 22.584666627437073 27.48928479222129 27.624176332187073 22.30187224815456 84-85 22.666042324241037 27.525905753700496 27.54524529792685 22.262806624131613 86-87 22.45056971348973 27.49435464205424 27.642698392019444 22.41237725243658 88-89 22.56269536490522 27.49521449147046 27.600641930336046 22.341448213288274 90-91 22.604228351567187 27.454861222655257 27.61508678932243 22.325823636455127 92-93 22.59796688099429 27.476303028126008 27.594223930457275 22.33150616042243 94-95 22.482095522990882 27.554537919572052 27.622719853320945 22.340646704116125 96-97 22.564111646358743 27.671584254274112 27.670757768961934 22.093546330405214 98-99 23.674822098705373 29.630636946009687 27.806645904599193 18.88789505068575 100 30.245619290100343 40.71935487945492 29.035025830444738 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 684.0 1 674.5 2 743.0 3 931.0 4 1275.0 5 1884.5 6 2400.0 7 2852.0 8 3614.0 9 4117.0 10 4095.5 11 4110.5 12 4578.0 13 5866.5 14 8067.0 15 10535.0 16 12937.0 17 15012.0 18 15551.0 19 14444.0 20 12986.0 21 11926.5 22 12006.0 23 13762.0 24 17346.5 25 22961.5 26 30623.0 27 39222.0 28 47770.0 29 57237.0 30 67072.5 31 76935.0 32 87473.5 33 98905.5 34 110520.5 35 121253.0 36 133274.5 37 143590.0 38 151918.5 39 160691.0 40 170710.0 41 179618.0 42 188499.5 43 211989.5 44 241601.5 45 256551.0 46 249568.0 47 232339.5 48 215444.5 49 202134.5 50 195291.0 51 188445.5 52 179512.5 53 169567.0 54 158740.5 55 146415.0 56 133442.0 57 120159.0 58 106825.5 59 92314.5 60 77397.5 61 63104.5 62 49973.5 63 38988.5 64 29825.0 65 22427.5 66 16504.0 67 12452.0 68 9517.0 69 7061.0 70 5158.0 71 3675.0 72 2607.0 73 1752.0 74 1149.0 75 773.5 76 534.5 77 356.0 78 224.0 79 136.5 80 84.0 81 55.5 82 41.5 83 29.0 84 19.0 85 15.0 86 13.0 87 7.0 88 1.5 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005249752136702688 3 1.9284803767479264E-4 4 7.499645909575269E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.2144917861698636E-5 26-27 6.644064701616661E-4 28-29 0.0013400533255460154 30-31 7.834651504505301E-4 32-33 6.669193071741047E-4 34-35 0.0011434574117668889 36-37 0.0 38-39 2.6159917099222716E-4 40-41 7.024155962602955E-4 42-43 2.8729884936810825E-4 44-45 0.0 46-47 0.0 48-49 0.0016993275534294072 50-51 0.004191747670953062 52-53 0.0 54-55 0.003697234723408595 56-57 0.04090021585316659 58-59 0.06004391682716641 60-61 0.033127052233370924 62-63 0.007195828825912684 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.004196865923400436 72-73 0.008258157267515992 74-75 0.005939829916313959 76-77 0.007678132678132678 78-79 0.01137849002757579 80-81 0.012535710903812598 82-83 0.04728524040007271 84-85 0.027630129988392593 86-87 0.0012944070342253747 88-89 0.0015749882860246229 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 38.0 20-21 130.0 22-23 293.0 24-25 414.0 26-27 1326.0 28-29 3448.0 30-31 10217.0 32-33 12337.0 34-35 16689.0 36-37 26867.0 38-39 31890.0 40-41 30537.0 42-43 33247.0 44-45 38583.0 46-47 38052.0 48-49 36614.0 50-51 33230.0 52-53 30858.0 54-55 32741.0 56-57 33567.0 58-59 37854.0 60-61 51082.0 62-63 46233.0 64-65 54336.0 66-67 63357.0 68-69 61639.0 70-71 79999.0 72-73 39255.0 74-75 36011.0 76-77 37042.0 78-79 37956.0 80-81 37992.0 82-83 35925.0 84-85 35570.0 86-87 36638.0 88-89 37797.0 90-91 37964.0 92-93 37438.0 94-95 43985.0 96-97 139908.0 98-99 1051064.0 100-101 2216764.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.67831656646952 #Duplication Level Percentage of deduplicated Percentage of total 1 92.10270482884665 81.67512815440564 2 5.8384801027761375 10.354931736420317 3 1.1636592544266136 3.095740312186354 4 0.4153231215518484 1.4732062100139647 5 0.18544937406574724 0.8222669150227978 6 0.10098454157134906 0.5373083487470337 7 0.05531688818844633 0.34337859655729297 8 0.03420836291517881 0.24268320286503214 9 0.02258803851865771 0.18027623073358218 >10 0.07929778895653296 1.049403199812323 >50 0.0011176931225757416 0.0653801856913881 >100 8.01119418175513E-4 0.11936886771955595 >500 6.888564203218466E-5 0.04092803982472144 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.1427559741643626E-5 2 0.0 0.0 0.0 0.0 2.1427559741643626E-5 3 0.0 0.0 0.0 2.1427559741643626E-5 2.1427559741643626E-5 4 0.0 4.285511948328725E-5 0.0 2.1427559741643626E-5 2.1427559741643626E-5 5 0.0 6.428267922493088E-5 0.0 2.1427559741643626E-5 2.1427559741643626E-5 6 0.0 6.428267922493088E-5 0.0 2.1427559741643626E-5 2.1427559741643626E-5 7 0.0 6.428267922493088E-5 0.0 2.1427559741643626E-5 2.1427559741643626E-5 8 0.0 6.428267922493088E-5 0.0 2.1427559741643626E-5 2.1427559741643626E-5 9 0.0 8.57102389665745E-5 0.0 6.428267922493088E-5 2.1427559741643626E-5 10-11 0.0 8.57102389665745E-5 0.0 6.428267922493088E-5 2.1427559741643626E-5 12-13 0.0 8.57102389665745E-5 0.0 6.428267922493088E-5 2.1427559741643626E-5 14-15 0.0 1.1785157857903994E-4 0.0 7.499645909575269E-5 8.57102389665745E-5 16-17 3.214133961246544E-5 1.4999291819150538E-4 0.0 8.57102389665745E-5 1.1785157857903994E-4 18-19 4.285511948328725E-5 1.607066980623272E-4 0.0 8.57102389665745E-5 1.2856535844986175E-4 20-21 4.285511948328725E-5 1.71420477933149E-4 0.0 8.57102389665745E-5 1.2856535844986175E-4 22-23 4.285511948328725E-5 2.2498937728725809E-4 0.0 9.642401883739632E-5 1.2856535844986175E-4 24-25 4.285511948328725E-5 2.7855827664136713E-4 0.0 1.2856535844986175E-4 1.2856535844986175E-4 26-27 4.285511948328725E-5 3.214133961246544E-4 0.0 2.3570315715807987E-4 1.2856535844986175E-4 28-29 4.285511948328725E-5 3.214133961246544E-4 0.0 9.963815279864286E-4 1.2856535844986175E-4 30-31 4.285511948328725E-5 3.856960753495853E-4 0.0 0.0021427559741643626 1.2856535844986175E-4 32-33 4.285511948328725E-5 3.856960753495853E-4 0.0 0.005003335199673787 1.2856535844986175E-4 34-35 4.285511948328725E-5 4.821200941869816E-4 0.0 0.008624592796011559 1.4999291819150538E-4 36-37 4.285511948328725E-5 5.571165532827343E-4 0.0 0.014517171724963557 1.4999291819150538E-4 38-39 4.285511948328725E-5 5.571165532827343E-4 0.0 0.02994501473894697 1.4999291819150538E-4 40-41 4.285511948328725E-5 5.999716727660215E-4 0.0 0.04733347946929077 1.607066980623272E-4 42-43 4.285511948328725E-5 6.32113012378487E-4 0.0 0.05819725225830409 1.8213425780397083E-4 44-45 4.285511948328725E-5 6.963956916034178E-4 0.0 0.07006812035517465 1.9284803767479264E-4 46-47 4.285511948328725E-5 7.071094714742397E-4 0.0 0.08234611208713646 2.0356181754561446E-4 48-49 4.285511948328725E-5 7.178232513450615E-4 0.0 0.09420626640413621 2.1427559741643627E-4 50-51 4.285511948328725E-5 9.106712890198541E-4 0.0 0.10662353727441869 2.1427559741643627E-4 52-53 4.285511948328725E-5 9.21385068890676E-4 0.0 0.13392224838527267 2.1427559741643627E-4 54-55 4.285511948328725E-5 9.642401883739632E-4 0.0 0.16874203296544354 2.1427559741643627E-4 56-57 4.285511948328725E-5 0.0010070953078572505 0.0 0.20954010671353301 2.1427559741643627E-4 58-59 4.285511948328725E-5 0.0010178090877280724 0.0 0.24261354517475997 2.1427559741643627E-4 60-61 6.428267922493088E-5 0.001028522867598894 0.0 0.2545701235105971 2.1427559741643627E-4 62-63 6.428267922493088E-5 0.0010392366474697159 0.0 0.26858374758163206 2.571307168997235E-4 64-65 6.428267922493088E-5 0.0011785157857903995 0.0 0.27580483521456595 2.571307168997235E-4 66-67 6.428267922493088E-5 0.0011785157857903995 0.0 0.28184740706170947 2.571307168997235E-4 68-69 6.428267922493088E-5 0.0011892295656612214 0.0 0.2877185584309198 2.571307168997235E-4 70-71 6.428267922493088E-5 0.001199943345532043 0.0 0.29238976645459813 2.571307168997235E-4 72-73 6.428267922493088E-5 0.001199943345532043 0.0 0.29609673428990246 2.7855827664136713E-4 74-75 6.428267922493088E-5 0.001210657125402865 0.0 0.2987001827985122 2.7855827664136713E-4 76-77 7.499645909575269E-5 0.0012320846851445084 0.0 0.3016678998227298 2.7855827664136713E-4 78-79 8.57102389665745E-5 0.0012535122448861522 0.0 0.3036285215390902 2.7855827664136713E-4 80-81 8.57102389665745E-5 0.001264226024756974 0.0 0.304303489670952 2.8927205651218895E-4 82-83 8.57102389665745E-5 0.001264226024756974 0.0 0.3049356026833304 3.321271759954762E-4 84-85 8.57102389665745E-5 0.0012856535844986176 0.0 0.30509630938139276 3.42840955866298E-4 86-87 8.57102389665745E-5 0.0013285087039819048 0.0 0.30516059206061774 3.42840955866298E-4 88 8.57102389665745E-5 0.0013927913832068358 0.0 0.3051713058404885 3.42840955866298E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 8285 0.0 51.047123 1 GGTATCA 5225 0.0 45.38916 1 TATACAC 10805 0.0 42.765015 3 TTATACA 10850 0.0 41.658154 2 GTATCAA 9790 0.0 40.833218 1 GCTCCGA 1595 0.0 40.143288 1 TCAACGC 11575 0.0 33.8066 4 TATCAAC 11730 0.0 33.613045 2 ATCAACG 11670 0.0 33.603584 3 CAACGCA 11960 0.0 32.71799 5 AACGCAG 12495 0.0 31.350813 6 TACACAT 16005 0.0 28.870419 5 ACGCAGA 14375 0.0 27.250673 7 ATACACA 17690 0.0 27.025566 4 CGCAGAG 14785 0.0 26.494987 8 ACACATC 17500 0.0 25.802326 6 CACATCT 19165 0.0 23.714542 7 GCAGAGT 17660 0.0 22.133976 9 CATCTCC 20770 0.0 21.780605 9 GATCAAC 2040 0.0 21.475002 1 >>END_MODULE