##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140116_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4937470 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.3135449936911 25.0 18.0 33.0 18.0 33.0 2 29.256570267768716 30.0 27.0 32.0 25.0 33.0 3 28.1658254126101 29.0 27.0 31.0 18.0 33.0 4 31.604328532629058 33.0 31.0 33.0 29.0 33.0 5 32.13806585153935 33.0 33.0 33.0 31.0 33.0 6 36.51771798107128 38.0 37.0 38.0 34.0 38.0 7 36.70093610695356 38.0 37.0 38.0 34.0 38.0 8 36.959021118102996 38.0 38.0 38.0 35.0 38.0 9 37.3079226810492 38.0 38.0 38.0 36.0 38.0 10-11 37.314764545404834 38.0 38.0 38.0 36.5 38.0 12-13 37.41939363682209 38.0 38.0 38.0 37.0 38.0 14-15 37.37132337006605 38.0 38.0 38.0 37.0 38.0 16-17 37.453070094603106 38.0 38.0 38.0 37.0 38.0 18-19 37.46907535640723 38.0 38.0 38.0 37.0 38.0 20-21 37.48736819361234 38.0 38.0 38.0 37.0 38.0 22-23 37.50588027290022 38.0 38.0 38.0 37.0 38.0 24-25 37.51392226259985 38.0 38.0 38.0 37.0 38.0 26-27 37.47907983387603 38.0 38.0 38.0 37.0 38.0 28-29 37.45850808400537 38.0 38.0 38.0 37.0 38.0 30-31 37.46365114074439 38.0 38.0 38.0 37.0 38.0 32-33 37.45641688313376 38.0 38.0 38.0 37.0 38.0 34-35 37.42607773471626 38.0 38.0 38.0 37.0 38.0 36-37 37.40094879695701 38.0 38.0 38.0 37.0 38.0 38-39 37.39382847685135 38.0 38.0 38.0 37.0 38.0 40-41 37.3831774804185 38.0 38.0 38.0 37.0 38.0 42-43 37.342371911313116 38.0 38.0 38.0 37.0 38.0 44-45 37.299534578292494 38.0 38.0 38.0 37.0 38.0 46-47 37.26550307301342 38.0 38.0 38.0 37.0 38.0 48-49 37.217662462650495 38.0 38.0 38.0 37.0 38.0 50-51 37.18402565072537 38.0 38.0 38.0 37.0 38.0 52-53 37.15119988512721 38.0 38.0 38.0 37.0 38.0 54-55 37.136263771358756 38.0 38.0 38.0 36.0 38.0 56-57 37.09373689076816 38.0 38.0 38.0 36.0 38.0 58-59 37.0670060454336 38.0 38.0 38.0 36.0 38.0 60-61 37.091014120774844 38.0 38.0 38.0 36.0 38.0 62-63 37.10553602058956 38.0 38.0 38.0 36.0 38.0 64-65 37.114775453790834 38.0 38.0 38.0 36.0 38.0 66-67 37.111357615090455 38.0 38.0 38.0 36.0 38.0 68-69 37.076101722789716 38.0 38.0 38.0 36.0 38.0 70-71 37.07301507642309 38.0 38.0 38.0 36.0 38.0 72-73 37.085204361517256 38.0 38.0 38.0 36.0 38.0 74-75 37.09801128237989 38.0 38.0 38.0 36.0 38.0 76-77 37.080425230096274 38.0 38.0 38.0 36.0 38.0 78-79 37.04298969153821 38.0 38.0 38.0 36.0 38.0 80-81 36.995588892049156 38.0 38.0 38.0 36.0 38.0 82-83 36.955383834462 38.0 38.0 38.0 36.0 38.0 84-85 36.928976106508074 38.0 38.0 38.0 35.5 38.0 86-87 36.95325747034737 38.0 38.0 38.0 36.0 38.0 88-89 36.90811753760369 38.0 38.0 38.0 35.0 38.0 90-91 36.92006517576292 38.0 38.0 38.0 35.0 38.0 92-93 36.90838068871799 38.0 38.0 38.0 35.0 38.0 94-95 36.923835983326825 38.0 38.0 38.0 35.0 38.0 96-97 36.919622261847344 38.0 38.0 38.0 35.0 38.0 98-99 36.90517251814481 38.0 38.0 38.0 35.0 38.0 100 35.37267624439791 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 5.0 20 14.0 21 58.0 22 254.0 23 836.0 24 2000.0 25 3927.0 26 7310.0 27 12224.0 28 19376.0 29 28556.0 30 38126.0 31 49395.0 32 63866.0 33 87357.0 34 135991.0 35 269192.0 36 920501.0 37 3298481.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 48.00229672281553 18.50609725223647 11.556485406493609 21.93512061845439 2 14.824924010557403 20.34959498290427 41.38678631345425 23.438694693084074 3 19.192872121646403 25.544703367603326 29.819230867381556 25.443193643368712 4 12.972175644975318 17.655131599653828 38.88252143774189 30.490171317628967 5 13.816104199114122 37.607438627475204 34.866702987562455 13.709754185848219 6 30.462888888438815 37.32857111030548 18.59284208309114 13.615697918164566 7 27.09420006602572 32.74314578113892 22.60212213947629 17.56053201335907 8 24.6149546225091 36.5851336818249 20.80306310721888 17.99684858844712 9 25.947519681132242 17.26392261623868 21.119156167024812 35.669401535604266 10-11 24.511521082659744 26.728668731151785 28.42557018067958 20.334240005508892 12-13 25.421724081361507 24.199914126060513 28.688822413098208 21.689539379479776 14-15 22.58165619234142 25.559547703580982 26.534135903610554 25.324660200467044 16-17 22.000761523614322 28.690614829052123 27.171010659305274 22.137612988028284 18-19 21.985146238863223 27.703672123577462 29.059346183369218 21.2518354541901 20-21 22.86700341473887 26.887990083889967 29.007700377930174 21.237306123440987 22-23 22.566760859149678 26.666680844655723 28.900250859262087 21.86630743693251 24-25 22.299176900592347 26.80980135565144 28.96694952701484 21.924072216741376 26-27 22.146047008471257 27.01247427086042 28.91663064933202 21.924848071336303 28-29 22.08819604254763 27.111659659501424 28.957396637979343 21.842747659971607 30-31 22.455411481674084 26.88491401253143 28.822536043438184 21.8371384623563 32-33 22.21521117066946 27.05380619932658 28.788243181774963 21.942739448229002 34-35 22.3449834248407 27.132649927392837 28.772969021521444 21.749397626245024 36-37 22.343869727875827 26.9417787029335 28.76711276291473 21.947238806275944 38-39 22.149531891336316 27.149086024470613 28.796319253046715 21.905062831146353 40-41 22.45887559308958 27.01658761573733 28.61823570616224 21.906301085010856 42-43 22.34256398292799 27.10384162005562 28.479105352154605 22.07448904486179 44-45 22.395596828411712 27.237644289293115 28.36259558793627 22.004163294358904 46-47 22.458252908196002 27.191689759822324 28.070663195738348 22.279394136243326 48-49 22.37104448490848 27.344645241324205 28.11728091116599 22.16702936260132 50-51 22.363656912096392 27.51819485023147 27.96422621258896 22.15392202508318 52-53 22.569684171068918 27.463092996495632 27.779205240859877 22.18801759157557 54-55 22.51902282783258 27.310591616725443 27.887553987632458 22.28283156780952 56-57 22.52336913236051 27.46517619762755 27.805638443666332 22.20581622634561 58-59 22.48936848493443 27.47170093633262 27.863005454077495 22.175925124655457 60-61 22.539615506781114 27.4154411839191 27.940691489900534 22.104251819399256 62-63 22.498597197934775 27.450797575350066 27.879651776151015 22.17095345056414 64-65 22.44408301959525 27.43459628416285 27.90133657967892 22.219984116562983 66-67 22.617773343270624 27.43241459490835 27.753601259799677 22.19621080202135 68-69 22.508097222259373 27.399774304721657 27.86077139031478 22.23135708270419 70-71 22.480832658375977 27.218059300646384 27.928166856499647 22.37294118447799 72-73 22.5812095997136 27.28078081402156 27.84091682641999 22.29709275984485 74-75 22.341732422214967 27.4062686465241 27.86746680426245 22.384532126998483 76-77 22.512314363210216 27.320224267801375 27.76868279098829 22.39877857800012 78-79 22.48222406412647 27.427092742147707 27.685571143673027 22.405112050052793 80-81 22.52213774849908 27.386270890560038 27.663462052834163 22.428129308106712 82-83 22.557010893376805 27.361388806755254 27.773533805192617 22.308066494675323 84-85 22.680654037980027 27.307662606690275 27.640182145383925 22.37150120994577 86-87 22.413874606807692 27.350692181081058 27.773492488109213 22.461940724002037 88-89 22.553537933897612 27.38305627130655 27.662604300750665 22.400801494045176 90-91 22.601395326060008 27.38695317821056 27.665226628339905 22.346424867389526 92-93 22.60015549892788 27.399448548717782 27.66408752390481 22.336308428449527 94-95 22.51966597325892 27.494270827253064 27.607378620961132 22.378684578526887 96-97 22.57731161320755 27.57658668889857 27.719960607786128 22.126141090107758 98-99 23.656000135797523 29.536392441026614 27.843828822621102 18.963778600554758 100 22.624918829564137 30.432701154407077 21.790692051152202 25.151687964876583 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 684.0 1 704.5 2 986.0 3 1376.5 4 1801.5 5 2605.5 6 3416.0 7 4249.0 8 5550.5 9 6460.0 10 6325.5 11 6159.0 12 6764.5 13 8285.5 14 11169.5 15 14651.5 16 17882.0 17 20492.5 18 21055.5 19 19635.0 20 17601.5 21 15812.5 22 15453.5 23 17184.5 24 20877.0 25 26643.0 26 34840.5 27 44723.5 28 53938.5 29 63734.5 30 73672.5 31 82937.5 32 94167.5 33 106198.0 34 118555.5 35 130515.0 36 143666.5 37 155170.0 38 162277.5 39 169490.0 40 178905.0 41 186779.0 42 191597.5 43 196926.5 44 202245.0 45 206932.5 46 209539.0 47 210313.5 48 211193.0 49 210161.0 50 206972.0 51 202212.5 52 195256.0 53 185921.5 54 174846.0 55 162748.5 56 150046.0 57 136707.0 58 123006.5 59 108523.0 60 91666.5 61 74249.0 62 58747.0 63 45510.5 64 34448.5 65 25851.5 66 19143.0 67 14557.5 68 11200.5 69 8125.0 70 5864.0 71 4261.5 72 3022.5 73 2082.0 74 1403.5 75 945.5 76 618.5 77 377.0 78 244.5 79 162.0 80 106.0 81 69.5 82 49.0 83 34.0 84 24.0 85 15.0 86 9.0 87 5.0 88 3.5 89 4.5 90 3.5 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005488640943641177 3 2.430394513789451E-4 4 6.68358491292099E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.0127134014997475E-5 24-25 5.063915731580867E-5 26-27 6.887729701987181E-4 28-29 0.0013781075057611987 30-31 6.89850933358168E-4 32-33 6.81327200981762E-4 34-35 0.0010607663036975967 36-37 0.0 38-39 1.5463566805701314E-4 40-41 7.992917237286564E-4 42-43 4.3898541690445044E-4 44-45 0.0 46-47 0.0 48-49 0.001716366563548794 50-51 0.0038499842810332794 52-53 0.0 54-55 0.0037658307620284806 56-57 0.04150525273876561 58-59 0.060182491436856146 60-61 0.03287782949616133 62-63 0.00741754194228676 64-65 0.0 66-67 0.0 68-69 9.3041355603247E-5 70-71 0.0032152831561407216 72-73 0.008949252411888632 74-75 0.006613519753413602 76-77 0.007562859950887174 78-79 0.010731809764755813 80-81 0.01176500753070894 82-83 0.04449957846740431 84-85 0.026708387383047743 86-87 0.0011723305780623418 88-89 0.0018708304820137466 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 27.0 20-21 136.0 22-23 353.0 24-25 413.0 26-27 1460.0 28-29 3842.0 30-31 11218.0 32-33 13779.0 34-35 18650.0 36-37 28942.0 38-39 33765.0 40-41 32671.0 42-43 36161.0 44-45 42277.0 46-47 42750.0 48-49 38762.0 50-51 35318.0 52-53 33954.0 54-55 36234.0 56-57 37017.0 58-59 36829.0 60-61 35825.0 62-63 34601.0 64-65 35896.0 66-67 37923.0 68-69 38262.0 70-71 37677.0 72-73 35474.0 74-75 36193.0 76-77 37531.0 78-79 38263.0 80-81 37944.0 82-83 36027.0 84-85 35746.0 86-87 37241.0 88-89 38550.0 90-91 38775.0 92-93 38664.0 94-95 45551.0 96-97 151907.0 98-99 337027.0 100-101 3287835.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.36436106197382 #Duplication Level Percentage of deduplicated Percentage of total 1 91.5134993429341 79.95018398640799 2 6.106421796755005 10.669672772968225 3 1.316948239522268 3.4516302449266263 4 0.47514736687786513 1.6604378447025583 5 0.21888106475901054 0.9561202185617738 6 0.1173571108005201 0.6151697400700024 7 0.07500128933684794 0.4586707805216566 8 0.04362835079010654 0.30492503927722553 9 0.02785541295554847 0.21902133194810278 >10 0.10239717743159013 1.3656631880561214 >50 0.0017284118828782475 0.10246432110459552 >100 0.0010644469169111771 0.1785664994794971 >500 3.499451866907478E-5 0.025253081292250974 >1k 3.4994518668885914E-5 0.042220950683305544 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 2.0253287614912092E-5 0.0 0.0 0.0 5 2.0253287614912092E-5 2.0253287614912092E-5 0.0 0.0 0.0 6 8.101315045964837E-5 2.0253287614912092E-5 0.0 0.0 0.0 7 8.101315045964837E-5 2.0253287614912092E-5 0.0 0.0 0.0 8 8.101315045964837E-5 2.0253287614912092E-5 0.0 0.0 0.0 9 8.101315045964837E-5 2.0253287614912092E-5 0.0 0.0 0.0 10-11 8.101315045964837E-5 2.0253287614912092E-5 0.0 0.0 0.0 12-13 1.0126643807456045E-4 2.0253287614912092E-5 0.0 0.0 0.0 14-15 1.1139308188201649E-4 1.0126643807456046E-4 0.0 0.0 0.0 16-17 1.4177301330438463E-4 1.2151972568947254E-4 0.0 3.0379931422368136E-5 0.0 18-19 1.4177301330438463E-4 1.620263009192967E-4 0.0 4.0506575229824183E-5 0.0 20-21 1.4177301330438463E-4 1.8227958853420882E-4 0.0 5.063321903728023E-5 0.0 22-23 1.4177301330438463E-4 1.8227958853420882E-4 0.0 7.088650665219233E-5 0.0 24-25 1.6202630091929673E-4 2.0253287614912092E-4 0.0 8.101315045964837E-5 0.0 26-27 1.6202630091929673E-4 2.22786163764033E-4 0.0 1.8227958853420882E-4 0.0 28-29 1.6202630091929673E-4 2.22786163764033E-4 0.0 4.962055465653463E-4 0.0 30-31 1.6202630091929673E-4 2.22786163764033E-4 0.0 0.0014278567768513024 0.0 32-33 1.6202630091929673E-4 2.430394513789451E-4 0.0 0.0034329322507275994 2.0253287614912092E-5 34-35 1.6202630091929673E-4 3.0379931422368136E-4 0.0 0.005883580052131963 2.0253287614912092E-5 36-37 1.6202630091929673E-4 3.6455917706841763E-4 0.0 0.009863351068462188 2.0253287614912092E-5 38-39 1.6202630091929673E-4 3.8481246468332974E-4 0.0 0.015179839067376612 2.0253287614912092E-5 40-41 1.8227958853420882E-4 4.050657522982418E-4 0.0 0.020577340216750683 2.0253287614912092E-5 42-43 1.8227958853420882E-4 4.151923961056978E-4 0.0 0.026005221297547124 2.0253287614912092E-5 44-45 1.8227958853420882E-4 4.3544568372061E-4 0.0 0.03236475360862952 2.0253287614912092E-5 46-47 1.8227958853420882E-4 4.6582561514297807E-4 0.0 0.03906859180916542 2.0253287614912092E-5 48-49 1.8227958853420882E-4 4.759522589504341E-4 0.0 0.0455698971335522 4.0506575229824183E-5 50-51 1.8227958853420882E-4 6.177252722548187E-4 0.0 0.05187879622559732 4.0506575229824183E-5 52-53 1.8227958853420882E-4 6.278519160622748E-4 0.0 0.057549716757772706 5.063321903728023E-5 54-55 1.8227958853420882E-4 6.278519160622748E-4 0.0 0.06366620961747615 6.075986284473627E-5 56-57 1.8227958853420882E-4 6.278519160622748E-4 0.0 0.06990422220286907 6.075986284473627E-5 58-59 2.025328761491209E-4 6.278519160622748E-4 0.0 0.076142234788262 6.075986284473627E-5 60-61 2.025328761491209E-4 6.379785598697309E-4 0.0 0.08222834771654308 6.075986284473627E-5 62-63 2.025328761491209E-4 6.78485135099555E-4 0.0 0.0875954689344948 6.075986284473627E-5 64-65 2.025328761491209E-4 7.493716417517473E-4 0.0 0.09318537631621053 6.075986284473627E-5 66-67 2.025328761491209E-4 7.493716417517473E-4 0.0 0.09848161102751005 6.075986284473627E-5 68-69 2.025328761491209E-4 7.493716417517473E-4 0.0 0.1037474658073872 7.088650665219233E-5 70-71 2.025328761491209E-4 7.493716417517473E-4 0.0 0.10872977456065555 8.101315045964837E-5 72-73 2.025328761491209E-4 7.493716417517473E-4 0.0 0.11245637948179939 1.0126643807456045E-4 74-75 2.025328761491209E-4 7.797515731741156E-4 0.0 0.11526145981646471 1.0126643807456045E-4 76-77 2.025328761491209E-4 8.101315045964836E-4 0.0 0.11792476713782565 1.0126643807456045E-4 78-79 2.025328761491209E-4 8.101315045964836E-4 0.0 0.1199197159678945 1.0126643807456045E-4 80-81 2.025328761491209E-4 8.101315045964836E-4 0.0 0.12064883432203133 1.1139308188201649E-4 82-83 2.025328761491209E-4 8.101315045964836E-4 0.0 0.12100326685529228 1.2151972568947254E-4 84-85 2.025328761491209E-4 8.202581484039397E-4 0.0 0.1211855464438265 1.2151972568947254E-4 86-87 2.025328761491209E-4 8.506380798263078E-4 0.0 0.12132731945713088 1.2151972568947254E-4 88 2.025328761491209E-4 9.316512302859561E-4 0.0 0.12135769938855324 1.6202630091929673E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6770 0.0 51.73677 1 GTATCAA 12380 0.0 38.527065 1 TCAACGC 14380 0.0 32.57397 4 TATCAAC 14605 0.0 32.248707 2 ATCAACG 14610 0.0 32.06117 3 CAACGCA 14775 0.0 31.731997 5 AACGCAG 15385 0.0 30.584772 6 ACGCAGA 17545 0.0 26.697842 7 CGCAGAG 18045 0.0 25.934444 8 GATCAAC 2120 0.0 25.355927 1 GTGGTAT 3255 0.0 22.805681 1 TGGTATC 2885 0.0 22.77297 2 GCAGAGT 20990 0.0 22.295713 9 GAGTACT 12400 0.0 20.986275 12-13 TACATGG 15545 0.0 20.66565 2 GTACATG 15660 0.0 20.568375 1 ACATGGG 15340 0.0 20.1901 3 CAGAGTA 20285 0.0 19.94755 10-11 GTACTTT 13755 0.0 18.857084 14-15 AGAGTAC 19045 0.0 18.323126 10-11 >>END_MODULE