##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140115_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5169372 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.128208029911562 25.0 18.0 33.0 18.0 33.0 2 29.0083749051142 30.0 27.0 32.0 25.0 33.0 3 27.852313588575168 29.0 25.0 31.0 18.0 33.0 4 31.48179933655384 33.0 31.0 33.0 29.0 33.0 5 32.11922995675297 33.0 33.0 33.0 31.0 33.0 6 36.45693384031948 38.0 37.0 38.0 34.0 38.0 7 36.66368932241673 38.0 37.0 38.0 34.0 38.0 8 36.92743934853208 38.0 38.0 38.0 35.0 38.0 9 37.31993673506182 38.0 38.0 38.0 36.0 38.0 10-11 37.31177626605321 38.0 38.0 38.0 36.5 38.0 12-13 37.42317645160766 38.0 38.0 38.0 37.0 38.0 14-15 37.37396824991508 38.0 38.0 38.0 37.0 38.0 16-17 37.46384647883727 38.0 38.0 38.0 37.0 38.0 18-19 37.47881125599009 38.0 38.0 38.0 37.0 38.0 20-21 37.49710902307362 38.0 38.0 38.0 37.0 38.0 22-23 37.51278635161569 38.0 38.0 38.0 37.5 38.0 24-25 37.515703006091634 38.0 38.0 38.0 37.5 38.0 26-27 37.473920028844454 38.0 38.0 38.0 37.0 38.0 28-29 37.45909439078294 38.0 38.0 38.0 37.0 38.0 30-31 37.45220424214837 38.0 38.0 38.0 37.0 38.0 32-33 37.44036989141421 38.0 38.0 38.0 37.0 38.0 34-35 37.397462093168286 38.0 38.0 38.0 37.0 38.0 36-37 37.36839237723205 38.0 38.0 38.0 37.0 38.0 38-39 37.31556995909975 38.0 38.0 38.0 37.0 38.0 40-41 37.37578237399421 38.0 38.0 38.0 37.0 38.0 42-43 37.33495891368186 38.0 38.0 38.0 37.0 38.0 44-45 37.269906098869804 38.0 38.0 38.0 37.0 38.0 46-47 37.20926858896073 38.0 38.0 38.0 37.0 38.0 48-49 37.14271431706898 38.0 38.0 38.0 37.0 38.0 50-51 37.09941613768564 38.0 38.0 38.0 36.5 38.0 52-53 37.06472961706014 38.0 38.0 38.0 36.0 38.0 54-55 37.04065173515696 38.0 38.0 38.0 36.0 38.0 56-57 36.99533637223657 38.0 38.0 38.0 36.0 38.0 58-59 36.95366526378838 38.0 38.0 38.0 36.0 38.0 60-61 36.962213372580926 38.0 38.0 38.0 36.0 38.0 62-63 36.98015947867876 38.0 38.0 38.0 36.0 38.0 64-65 36.997422753633934 38.0 38.0 38.0 36.0 38.0 66-67 36.990370861778885 38.0 38.0 38.0 36.0 38.0 68-69 36.950522176148866 38.0 38.0 38.0 36.0 38.0 70-71 36.959254216599845 38.0 38.0 38.0 36.0 38.0 72-73 36.98222173080306 38.0 38.0 38.0 36.0 38.0 74-75 37.011799903611944 38.0 38.0 38.0 36.0 38.0 76-77 37.00494768181104 38.0 38.0 38.0 36.0 38.0 78-79 36.9792205343267 38.0 38.0 38.0 36.0 38.0 80-81 36.940723484794056 38.0 38.0 38.0 36.0 38.0 82-83 36.90870273438377 38.0 38.0 38.0 35.5 38.0 84-85 36.890512890961205 38.0 38.0 38.0 35.0 38.0 86-87 36.9204774000998 38.0 38.0 38.0 35.0 38.0 88-89 36.88666035684447 38.0 38.0 38.0 35.0 38.0 90-91 36.90399124084716 38.0 38.0 38.0 35.0 38.0 92-93 36.89902758279243 38.0 38.0 38.0 35.0 38.0 94-95 36.92023037055142 38.0 38.0 38.0 35.0 38.0 96-97 36.923721317095655 38.0 38.0 38.0 35.0 38.0 98-99 36.91331770950831 38.0 38.0 38.0 35.0 38.0 100 35.413264631705964 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 5.0 19 16.0 20 48.0 21 155.0 22 380.0 23 1002.0 24 2211.0 25 4219.0 26 7648.0 27 13460.0 28 22524.0 29 33599.0 30 44531.0 31 56164.0 32 70180.0 33 94917.0 34 149517.0 35 309063.0 36 1096790.0 37 3262941.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 48.12454975188476 19.080847731600667 10.952084701971536 21.842517814543044 2 14.430149068070646 20.07115337925351 42.625343022935255 22.873354529740585 3 18.808355847394708 27.21210083565438 30.225896348524245 23.753646968426665 4 12.210439284403673 18.89903138486371 37.8030150469915 31.087514283741115 5 12.895957187836357 38.55909383190067 34.70549227256232 13.839456707700664 6 28.575095775657083 37.29774138908943 19.05051522699469 15.076647608258797 7 26.125997509948984 33.55003276993801 21.41983591043554 18.90413380967746 8 24.489106220252673 35.77974268441118 21.397589494429884 18.33356160090626 9 26.03687643295936 16.86444697731175 20.17715111235949 36.9215254773694 10-11 24.23795385590358 26.748935847526546 27.93019152036263 21.082918776207247 12-13 25.712533359951657 24.234297705794823 27.994425628490273 22.058743305763254 14-15 22.927997830297375 25.22942825550183 25.82843718734113 26.014136726859665 16-17 21.858854421775025 29.1532994723537 26.339350311798025 22.648495794073245 18-19 21.982912044248316 27.14487369065333 28.863254569413847 22.008959695684503 20-21 23.225714282121647 25.999185382697476 28.6691995055035 22.10590082967737 22-23 22.687542107409016 26.822162002951206 28.64368801172744 21.846607877912334 24-25 22.769213058916225 26.885498686553216 28.975888783391802 21.369399471138752 26-27 22.548600057684496 26.944986775234526 28.984484883363056 21.521928283717926 28-29 21.85813832434496 26.352194030817373 29.43334072616733 22.356326918670337 30-31 22.00257073969995 26.518303746169074 29.79965702139946 21.67946849273151 32-33 21.01321238913097 26.105539634736317 30.55555825674647 22.32568971938624 34-35 21.221336059174597 26.317666188434057 29.93381140976192 22.527186342629424 36-37 21.54251944246881 26.574306822733107 30.237282373551942 21.64589136124614 38-39 21.5112821624411 26.22850119811669 30.123782801789524 22.136433837652692 40-41 21.857446777932054 26.094941797657533 30.218828671370545 21.828782753039864 42-43 22.392536566086733 25.886576727324417 29.966513846158183 21.754372860430667 44-45 21.68821198892719 26.667468012520928 29.718327949163758 21.925992049388125 46-47 22.539138474502295 25.90268594962649 28.81606236839394 22.742113207477267 48-49 22.220930931240527 25.998550630009415 28.814877088363772 22.96564135038629 50-51 21.714122931295744 26.353833673261633 29.29243961140584 22.639603784036783 52-53 21.87811726976885 26.57267704710524 29.82184934472033 21.72735633840557 54-55 21.976230409578033 26.723186967507583 28.8501424699453 22.450440152969087 56-57 22.600303551040057 27.578057336190632 27.726332928114616 22.09530618465469 58-59 21.43847085697895 28.594072370225327 28.855512997858 21.111943774937718 60-61 22.172460732347187 29.709825638733722 27.092719616485972 21.024994012433122 62-63 21.2989385309883 30.406386740774156 27.144263751275822 21.150410976961723 64-65 21.33334768722049 30.183448343854163 27.25485874358537 21.228345225339975 66-67 21.70089155642939 29.76715753902453 27.24044926785045 21.291501636695624 68-69 21.773484719546598 29.069737803880365 27.61996145221481 21.536816024358235 70-71 21.879727313333944 28.19227538109972 28.018739651786667 21.90925765377967 72-73 22.26607214219244 27.40607735856715 28.298673380511236 22.029177118729176 74-75 22.146213222330793 27.408019601766515 28.237386209384784 22.20838096651791 76-77 22.205378604826308 27.339140803966483 28.233282078639345 22.222198512567857 78-79 22.2713942982406 27.39340158578358 28.080193453911818 22.25501066206401 80-81 22.251301562286223 27.371178509228976 28.1034198092585 22.274100119226294 82-83 22.358657341600964 27.296926856488753 28.208223916175985 22.136191885734302 84-85 22.51649523424181 27.28573054236709 27.998565952487827 22.19920827090327 86-87 22.218434512474463 27.365252669769212 28.13007252820301 22.286240289553312 88-89 22.41205872945583 27.31405943819637 27.999525888177573 22.27435594417023 90-91 22.46227322350044 27.30937636479692 28.023911993114936 22.204438418587706 92-93 22.460076958247072 27.347347582759856 27.92907888739098 22.26349657160209 94-95 22.276037131259578 27.515189920602378 27.944773403296143 22.2639995448419 96-97 22.43565593592085 27.56914062093531 27.963142487387476 22.03206095575636 98-99 23.466012637431177 29.51812681438143 28.14330234496681 18.87255820322059 100 30.09844993807343 40.565501469965284 29.336048591961283 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1184.0 1 1215.5 2 1697.0 3 2358.0 4 3082.0 5 4486.5 6 5814.0 7 7109.5 8 9275.5 9 10634.5 10 10229.0 11 9865.5 12 10784.5 13 13472.0 14 18723.5 15 24852.0 16 30380.0 17 34765.5 18 35143.5 19 31257.5 20 25929.0 21 20840.5 22 18068.5 23 18593.0 24 21414.5 25 26392.5 26 34541.0 27 44364.0 28 53196.5 29 63217.5 30 73822.5 31 84276.5 32 97149.5 33 112062.0 34 126022.0 35 139550.5 36 154568.0 37 166382.5 38 174382.5 39 180826.5 40 188613.0 41 195650.0 42 200624.0 43 207910.0 44 232659.5 45 273130.5 46 281173.5 47 268226.5 48 253361.0 49 230638.5 50 217749.0 51 209507.0 52 199768.5 53 189674.0 54 178360.5 55 164774.5 56 150857.0 57 135820.5 58 121050.5 59 105818.0 60 89307.5 61 72198.0 62 55687.0 63 42860.5 64 33309.0 65 25082.5 66 17802.0 67 12921.5 68 9710.0 69 7084.0 70 5107.5 71 3714.0 72 2663.0 73 1848.5 74 1244.5 75 808.5 76 546.5 77 364.0 78 248.5 79 171.5 80 108.5 81 68.5 82 52.5 83 40.0 84 26.0 85 17.5 86 12.0 87 9.0 88 7.5 89 7.5 90 7.5 91 5.0 92 1.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004971590359525296 3 1.9344709570137341E-4 4 6.383754158145322E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.9345826674741616E-5 24-25 2.9021095240656465E-5 26-27 7.353219341018028E-4 28-29 0.0015488892866522628 30-31 8.338303188266572E-4 32-33 7.973851988970412E-4 34-35 0.0011615665921734814 36-37 0.0 38-39 1.9786372472328017E-4 40-41 0.0010778834680221917 42-43 4.127364841636535E-4 44-45 0.0 46-47 0.0 48-49 0.0016140876739101366 50-51 0.0037265448739164596 52-53 0.0 54-55 0.0036039885856532935 56-57 0.04063898962286866 58-59 0.0590301332691424 60-61 0.03212617791377798 62-63 0.00712765074198061 64-65 0.0 66-67 0.0 68-69 1.1745926219139048E-5 70-71 0.0034302955547447582 72-73 0.007994368629410865 74-75 0.005684010469004085 76-77 0.006903216899074968 78-79 0.010299039141555404 80-81 0.011275848790482 82-83 0.04577959513499709 84-85 0.02696672769293324 86-87 9.324872565625456E-4 88-89 0.001442810951717208 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 44.0 20-21 173.0 22-23 414.0 24-25 642.0 26-27 1986.0 28-29 5707.0 30-31 14493.0 32-33 18095.0 34-35 24380.0 36-37 37957.0 38-39 45146.0 40-41 42396.0 42-43 47249.0 44-45 57210.0 46-47 58130.0 48-49 53549.0 50-51 47193.0 52-53 42195.0 54-55 44464.0 56-57 46523.0 58-59 47072.0 60-61 52505.0 62-63 54641.0 64-65 69356.0 66-67 80778.0 68-69 79399.0 70-71 105127.0 72-73 52655.0 74-75 44955.0 76-77 45944.0 78-79 47864.0 80-81 48471.0 82-83 44680.0 84-85 43455.0 86-87 44983.0 88-89 46369.0 90-91 47389.0 92-93 45849.0 94-95 51042.0 96-97 145405.0 98-99 1091256.0 100-101 2292231.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.33864304098067 #Duplication Level Percentage of deduplicated Percentage of total 1 90.40204218779809 78.05189650627975 2 6.844105876787827 11.818216284613243 3 1.6149151896847518 4.182887583109481 4 0.5683938908614629 1.9629742899904785 5 0.23571725532734855 1.0175753983153821 6 0.12145018147423123 0.6291506319339584 7 0.06756084615157916 0.4083178245599464 8 0.03998695805702528 0.27619357583841375 9 0.02690275637919049 0.20904727318572536 >10 0.07573896146849735 0.990388989901639 >50 0.0018114160055220858 0.10696338236780109 >100 0.0012383304202573404 0.24047597788711558 >500 1.021121888568916E-4 0.06424091296296426 >1k 3.403739536534678E-5 0.04167136905403648 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.868941914027468E-5 0.0 2 0.0 0.0 0.0 3.868941914027468E-5 0.0 3 0.0 0.0 0.0 5.803412871041202E-5 0.0 4 0.0 0.0 0.0 5.803412871041202E-5 0.0 5 0.0 0.0 0.0 5.803412871041202E-5 0.0 6 0.0 0.0 0.0 7.737883828054936E-5 3.868941914027468E-5 7 0.0 0.0 0.0 7.737883828054936E-5 3.868941914027468E-5 8 0.0 0.0 0.0 1.1606825742082404E-4 3.868941914027468E-5 9 0.0 0.0 0.0 1.7410238613123607E-4 3.868941914027468E-5 10-11 0.0 0.0 0.0 3.191877079072661E-4 3.868941914027468E-5 12-13 0.0 0.0 0.0 4.6427302968329615E-4 3.868941914027468E-5 14-15 0.0 0.0 0.0 4.6427302968329615E-4 7.737883828054935E-5 16-17 0.0 0.0 0.0 4.8361773925343347E-4 1.1606825742082404E-4 18-19 0.0 0.0 0.0 5.609965775339829E-4 1.4508532177603007E-4 20-21 0.0 0.0 0.0 6.577201253846695E-4 1.7410238613123607E-4 22-23 1.934470957013734E-5 0.0 0.0 7.060818993100129E-4 2.1279180527151073E-4 24-25 1.934470957013734E-5 0.0 0.0 7.350989636652189E-4 2.514812244117854E-4 26-27 1.934470957013734E-5 0.0 0.0 9.575631237217982E-4 2.611535791968541E-4 28-29 1.934470957013734E-5 0.0 0.0 0.002021522150079352 2.7082593398192276E-4 30-31 1.934470957013734E-5 0.0 0.0 0.0033853241747740345 2.7082593398192276E-4 32-33 1.934470957013734E-5 0.0 0.0 0.006045221740667919 2.7082593398192276E-4 34-35 1.934470957013734E-5 0.0 0.0 0.009256443529310716 2.901706435520601E-4 36-37 1.934470957013734E-5 0.0 0.0 0.014547221596743279 2.901706435520601E-4 38-39 1.934470957013734E-5 0.0 0.0 0.02211100303866698 2.9984299833712877E-4 40-41 1.934470957013734E-5 0.0 0.0 0.029781180383226434 3.0951535312219745E-4 42-43 1.934470957013734E-5 0.0 0.0 0.0368613440858967 3.0951535312219745E-4 44-45 1.934470957013734E-5 0.0 0.0 0.044086593110343 3.0951535312219745E-4 46-47 1.934470957013734E-5 0.0 0.0 0.051476272166135456 3.191877079072661E-4 48-49 1.934470957013734E-5 0.0 0.0 0.05863381470708628 3.3853241747740345E-4 50-51 1.934470957013734E-5 0.0 0.0 0.06588808079588777 3.4820477226247214E-4 52-53 1.934470957013734E-5 0.0 0.0 0.07344218988302642 3.4820477226247214E-4 54-55 1.934470957013734E-5 0.0 0.0 0.08070612832661297 3.4820477226247214E-4 56-57 1.934470957013734E-5 0.0 0.0 0.0877379302553579 3.578771270475408E-4 58-59 1.934470957013734E-5 0.0 0.0 0.09473104276496255 3.6754948183260946E-4 60-61 1.934470957013734E-5 0.0 0.0 0.10146300169537034 3.772218366176781E-4 62-63 1.934470957013734E-5 0.0 0.0 0.10764363640302924 4.0623890097288414E-4 64-65 1.934470957013734E-5 0.0 0.0 0.11395968407767906 4.0623890097288414E-4 66-67 1.934470957013734E-5 0.0 0.0 0.1201209740757678 4.1591125575795283E-4 68-69 1.934470957013734E-5 0.0 0.0 0.1257696292702479 4.4492832011315883E-4 70-71 1.934470957013734E-5 0.0 0.0 0.131273199142952 4.4492832011315883E-4 72-73 1.934470957013734E-5 0.0 0.0 0.1358675676658596 4.8361773925343347E-4 74-75 1.934470957013734E-5 0.0 0.0 0.13934961538848434 4.8361773925343347E-4 76-77 1.934470957013734E-5 0.0 0.0 0.14268657778933302 4.8361773925343347E-4 78-79 1.934470957013734E-5 0.0 0.0 0.14493056409946894 4.8361773925343347E-4 80-81 1.934470957013734E-5 0.0 0.0 0.14560762893442375 5.029624488235708E-4 82-83 1.934470957013734E-5 0.0 0.0 0.1460235401901817 5.706689323190515E-4 84-85 1.934470957013734E-5 0.0 0.0 0.14626534905980842 5.803412871041202E-4 86-87 1.934470957013734E-5 0.0 0.0 0.1464587961555098 5.803412871041202E-4 88 1.934470957013734E-5 0.0 0.0 0.14647814086507993 5.996859966742575E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 9195 0.0 57.00431 1 GGTATCA 10865 0.0 53.199165 1 TATACAC 12675 0.0 46.44467 3 TTATACA 12365 0.0 46.313354 2 GTATCAA 21030 0.0 39.018497 1 TATCAAC 24575 0.0 33.12233 2 GATCAAC 2805 0.0 31.803587 1 ATCAACG 25510 0.0 31.7949 3 TGGTATC 4125 0.0 31.692204 2 GTGGTAT 4400 0.0 31.580086 1 TCAACGC 25850 0.0 31.440018 4 TACACAT 18935 0.0 31.371477 5 CAACGCA 26420 0.0 30.730293 5 AACGCAG 27505 0.0 29.637632 6 ATACACA 21210 0.0 28.840242 4 ACACATC 20970 0.0 27.778187 6 GCAACGC 620 0.0 27.185757 1 ACATCTC 22060 0.0 26.442915 8 ACGCAGA 31215 0.0 26.04926 7 CGCAGAG 31555 0.0 25.755554 8 >>END_MODULE