##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140114_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4999335 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.14088813812237 25.0 18.0 33.0 18.0 33.0 2 29.051138201380784 30.0 27.0 32.0 25.0 33.0 3 28.01112948022087 29.0 27.0 31.0 18.0 33.0 4 31.579083218068003 33.0 31.0 33.0 29.0 33.0 5 32.14846154538554 33.0 33.0 33.0 31.0 33.0 6 36.4850809157618 38.0 37.0 38.0 34.0 38.0 7 36.73400642285424 38.0 37.0 38.0 34.0 38.0 8 36.95398087945697 38.0 38.0 38.0 35.0 38.0 9 37.31593521938418 38.0 38.0 38.0 36.0 38.0 10-11 37.32019148546756 38.0 38.0 38.0 36.5 38.0 12-13 37.4221323436017 38.0 38.0 38.0 37.0 38.0 14-15 37.36534489087049 38.0 38.0 38.0 37.0 38.0 16-17 37.45032609337042 38.0 38.0 38.0 37.0 38.0 18-19 37.466223607739835 38.0 38.0 38.0 37.0 38.0 20-21 37.48639849250978 38.0 38.0 38.0 37.0 38.0 22-23 37.50226266037159 38.0 38.0 38.0 37.0 38.0 24-25 37.508553016184806 38.0 38.0 38.0 37.0 38.0 26-27 37.47586409886104 38.0 38.0 38.0 37.0 38.0 28-29 37.45407270561645 38.0 38.0 38.0 37.0 38.0 30-31 37.45407429322447 38.0 38.0 38.0 37.0 38.0 32-33 37.44004661203077 38.0 38.0 38.0 37.0 38.0 34-35 37.405454559454 38.0 38.0 38.0 37.0 38.0 36-37 37.38218750278547 38.0 38.0 38.0 37.0 38.0 38-39 37.354026708781795 38.0 38.0 38.0 37.0 38.0 40-41 37.3707138857932 38.0 38.0 38.0 37.0 38.0 42-43 37.333440243777886 38.0 38.0 38.0 37.0 38.0 44-45 37.287158632979285 38.0 38.0 38.0 37.0 38.0 46-47 37.249973357850905 38.0 38.0 38.0 37.0 38.0 48-49 37.20116353921824 38.0 38.0 38.0 37.0 38.0 50-51 37.16311903992748 38.0 38.0 38.0 37.0 38.0 52-53 37.12567192204594 38.0 38.0 38.0 36.0 38.0 54-55 37.103146306351476 38.0 38.0 38.0 36.0 38.0 56-57 37.056901501033565 38.0 38.0 38.0 36.0 38.0 58-59 37.022737696900116 38.0 38.0 38.0 36.0 38.0 60-61 37.04219926321066 38.0 38.0 38.0 36.0 38.0 62-63 37.05298650401027 38.0 38.0 38.0 36.0 38.0 64-65 37.05838415199452 38.0 38.0 38.0 36.0 38.0 66-67 37.04861301060795 38.0 38.0 38.0 36.0 38.0 68-69 37.00774162759717 38.0 38.0 38.0 36.0 38.0 70-71 37.0026762616947 38.0 38.0 38.0 36.0 38.0 72-73 37.0154616175694 38.0 38.0 38.0 36.0 38.0 74-75 37.030853904548906 38.0 38.0 38.0 36.0 38.0 76-77 37.011318835851654 38.0 38.0 38.0 36.0 38.0 78-79 36.97314369069309 38.0 38.0 38.0 36.0 38.0 80-81 36.92482526686338 38.0 38.0 38.0 36.0 38.0 82-83 36.88516399564576 38.0 38.0 38.0 35.0 38.0 84-85 36.85603948442767 38.0 38.0 38.0 35.0 38.0 86-87 36.88074002426832 38.0 38.0 38.0 35.0 38.0 88-89 36.83859486824096 38.0 38.0 38.0 35.0 38.0 90-91 36.849105522749184 38.0 38.0 38.0 35.0 38.0 92-93 36.83554951918604 38.0 38.0 38.0 35.0 38.0 94-95 36.8500851505226 38.0 38.0 38.0 35.0 38.0 96-97 36.85071999968907 38.0 38.0 38.0 35.0 38.0 98-99 36.83279766265697 38.0 38.0 38.0 35.0 38.0 100 35.22855572320033 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 4.0 20 39.0 21 86.0 22 279.0 23 950.0 24 2124.0 25 4281.0 26 7691.0 27 12880.0 28 20684.0 29 30033.0 30 40252.0 31 51448.0 32 67166.0 33 91359.0 34 141418.0 35 279993.0 36 983872.0 37 3264775.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.48205511333008 18.677304081442834 11.892161657500449 21.948479147726648 2 14.544858067890967 20.21264061435734 41.89540202178616 23.347099295965528 3 19.09997939723923 25.6029908007673 30.117695771233343 25.17933403076012 4 12.792938218412358 18.146822408314755 38.74984622862578 30.310393144647108 5 13.670218139012489 37.6069817285699 35.05982295645321 13.662977175964402 6 29.989008538135568 37.59035951781587 18.675603855312755 13.745028088735802 7 26.715893213797436 32.816264563186905 22.396638752954143 18.071203470061516 8 24.21590071479507 36.881805280102256 21.02253599728764 17.879758007815038 9 25.374374791847316 17.612382446865432 21.101386484402425 35.911856276884826 10-11 24.228422380176564 26.883965567420464 28.530014491927425 20.357597560475543 12-13 25.24227722287064 24.214420517928883 28.733651575659565 21.80965068354091 14-15 22.348462345491953 25.66968406798104 26.40722216054735 25.574631425979653 16-17 21.86532808863579 29.01300873016111 27.042646672007375 22.07901650919572 18-19 21.842525055832425 27.82431063331423 28.997316643113535 21.33584766773981 20-21 22.533417065399124 26.96253530133692 28.95935304277346 21.54469459049049 22-23 22.25565821395194 27.05087751725109 28.857291226587805 21.836173042209165 24-25 22.128542304199904 27.16718289479449 29.000357888828006 21.703916912177604 26-27 21.98297150115828 27.26833655769269 29.091550964701845 21.657140976447188 28-29 21.75708396846339 27.146115806092126 29.271566534943894 21.82523369050059 30-31 22.187276119223576 26.92465345058876 28.88880407797582 21.99926635221184 32-33 22.10989654223076 27.12345166890503 29.104634979122064 21.662016809742145 34-35 22.163802155792027 27.374845470376354 28.957440139110624 21.503912234721 36-37 21.986377054232683 27.21765813054863 28.88223700685107 21.913727808367614 38-39 21.86998151898652 27.192608894942673 29.129051763091933 21.80835782297887 40-41 22.148210795511293 27.04961463295799 29.05689884852473 21.74527572300598 42-43 22.266308852324627 27.0490749146686 28.90134439644139 21.783271836565376 44-45 22.072526913847078 27.316554364084293 28.767689781964766 21.843228940103863 46-47 22.3574921343163 27.137560464632767 28.29683109477014 22.208116306280793 48-49 22.203898367310767 27.207316507083146 28.39911845753278 22.189666668073308 50-51 22.071311544108482 27.433865889183057 28.40368536079088 22.091137205917576 52-53 22.22966250307407 27.487522884757265 28.44181123510984 21.841003377058822 54-55 22.219687288240635 27.412032272288904 28.234549367437396 22.133731072033058 56-57 22.39381272423436 27.760715637869538 27.914519894975378 21.93095174292073 58-59 22.062446406230233 28.054625230189632 28.225927611510183 21.657000752069948 60-61 22.300443331292684 28.279723529250205 27.788373539394378 21.631459600062726 62-63 22.003372202839287 28.50502172272763 27.789040173223324 21.70256590120976 64-65 22.030666065592246 28.44289417333484 27.7628197903753 21.763619970697622 66-67 22.21269699121639 28.337798854755462 27.673311502232682 21.776192651795462 68-69 22.12957082843816 28.126990299806465 27.909473461344543 21.833965410410837 70-71 22.14992077145249 27.792737793212385 28.030907354314564 22.02643408102056 72-73 22.34903482452203 27.630882687336793 28.026263313650684 21.993819174490493 74-75 22.154276459659382 27.722892040084997 28.019334610072256 22.103496890183372 76-77 22.27344305720124 27.610365565481548 27.951119008269238 22.165072369047977 78-79 22.262204441903474 27.67047520705353 27.91825639440027 22.149063956642728 80-81 22.29875337989304 27.6515805048494 27.869561271801302 22.18010484345626 82-83 22.293766250817 27.59894872966123 28.012242070147312 22.095042949374452 84-85 22.486638269399805 27.549617426290425 27.880385649836516 22.08335865447326 86-87 22.20579756098209 27.630419057454443 27.969841437138598 22.193941944424868 88-89 22.34340723337543 27.58636296571512 27.899207130734826 22.17102267017462 90-91 22.39065359679871 27.603297453236962 27.92174623362389 22.08430271634044 92-93 22.40448205686181 27.59841253516472 27.863512733133906 22.133592674839566 94-95 22.246929166494848 27.707815888503657 27.869975035765155 22.175279909236345 96-97 22.35323756020512 27.791673705648705 27.971755262047537 21.88333347209864 98-99 23.4001097579331 29.723905530380318 28.153098527992555 18.722886183694023 100 22.388506334148914 30.58478085526663 22.093651364613475 24.93306144597098 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 933.0 1 922.0 2 1099.0 3 1394.5 4 1786.5 5 2517.5 6 3245.5 7 4119.0 8 5427.0 9 6273.5 10 6165.5 11 6071.5 12 6684.0 13 8235.0 14 11241.5 15 14866.5 16 18154.5 17 20883.0 18 21680.0 19 20371.0 20 18383.0 21 16692.5 22 16415.5 23 18220.0 24 22110.0 25 28115.5 26 36805.5 27 46864.5 28 56581.0 29 67014.5 30 77607.0 31 88461.5 32 100290.5 33 112655.5 34 125162.0 35 136319.5 36 148474.5 37 160355.5 38 169169.0 39 176798.5 40 185346.0 41 192788.0 42 197978.0 43 204188.5 44 213352.0 45 226399.0 46 229642.0 47 225910.0 48 222439.5 49 213420.5 50 205418.0 51 197896.0 52 188312.5 53 177762.0 54 167090.5 55 154959.5 56 141814.5 57 128021.5 58 113291.0 59 98540.0 60 82766.5 61 67019.5 62 52620.5 63 40636.0 64 30903.0 65 23105.5 66 17008.0 67 12876.5 68 9863.0 69 7184.0 70 5217.0 71 3722.0 72 2606.5 73 1739.5 74 1172.5 75 783.5 76 505.0 77 329.0 78 212.5 79 130.5 80 89.5 81 56.0 82 40.0 83 26.5 84 14.5 85 10.0 86 6.0 87 3.0 88 1.5 89 1.0 90 1.0 91 1.5 92 1.5 93 1.5 94 2.0 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0058007715026098475 3 1.000133017691353E-4 4 6.000798106148118E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 8.00197968977525E-5 26-27 6.102219987631501E-4 28-29 0.0013809885115765865 30-31 7.713058980159307E-4 32-33 6.624208168752707E-4 34-35 0.0010867899374924718 36-37 0.0 38-39 3.0476512462963417E-4 40-41 8.280469521022884E-4 42-43 3.49801940083866E-4 44-45 0.0 46-47 0.0 48-49 0.0015086006589525478 50-51 0.003531055419702098 52-53 0.0 54-55 0.0035737332977903422 56-57 0.039021104703256745 58-59 0.057349764745228196 60-61 0.030345781377299916 62-63 0.006545152448998352 64-65 0.0 66-67 0.0 68-69 4.607673319647775E-5 70-71 0.0039178378106096215 72-73 0.007933193070072524 74-75 0.005481652551411346 76-77 0.007170456180572299 78-79 0.010305429600304885 80-81 0.011922375634642421 82-83 0.042917917250534336 84-85 0.025204103759232162 86-87 0.001012208883980238 88-89 0.001495860876244617 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 34.0 20-21 123.0 22-23 342.0 24-25 463.0 26-27 1278.0 28-29 3334.0 30-31 9321.0 32-33 12003.0 34-35 16630.0 36-37 26121.0 38-39 31195.0 40-41 30465.0 42-43 34893.0 44-45 41576.0 46-47 42032.0 48-49 39327.0 50-51 35747.0 52-53 34421.0 54-55 36772.0 56-57 38287.0 58-59 38459.0 60-61 40116.0 62-63 39662.0 64-65 44504.0 66-67 49107.0 68-69 49842.0 70-71 57392.0 72-73 40385.0 74-75 39464.0 76-77 41011.0 78-79 42344.0 80-81 41734.0 82-83 39742.0 84-85 39346.0 86-87 40754.0 88-89 41812.0 90-91 42822.0 92-93 42178.0 94-95 49070.0 96-97 152428.0 98-99 334587.0 100-101 3258212.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.47037149600413 #Duplication Level Percentage of deduplicated Percentage of total 1 92.1881757121265 82.48110328502862 2 5.908779026052026 10.573213090973447 3 1.186350535376804 3.1842966937393817 4 0.36973166821265985 1.3232011883529609 5 0.14978758169514597 0.670077528987639 6 0.07186900793804392 0.3858088103559636 7 0.04041754130966668 0.253132070515168 8 0.023181415416446634 0.1659239879290142 9 0.015523193298735957 0.1249979284117969 >10 0.04438822642692547 0.6044169507247873 >50 9.967495905435244E-4 0.06280433521571067 >100 7.389145021886596E-4 0.12474431468995323 >500 3.0214027497215838E-5 0.017246800487933537 >1k 3.0214026816826807E-5 0.029033014587649127 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 6.0007981061481175E-5 0.0 0.0 0.0 5 0.0 1.2001596212296235E-4 0.0 0.0 0.0 6 1.2001596212296235E-4 1.2001596212296235E-4 0.0 0.0 0.0 7 1.2001596212296235E-4 1.2001596212296235E-4 0.0 0.0 0.0 8 1.2001596212296235E-4 1.2001596212296235E-4 0.0 0.0 0.0 9 1.2001596212296235E-4 2.000266035382706E-4 0.0 0.0 2.000266035382706E-5 10-11 1.2001596212296235E-4 2.000266035382706E-4 0.0 9.001197159222176E-5 2.000266035382706E-5 12-13 1.2001596212296235E-4 2.2002926389209766E-4 0.0 1.3001729229987588E-4 2.000266035382706E-5 14-15 1.2001596212296235E-4 2.700359147766653E-4 0.0 1.400186224767894E-4 2.000266035382706E-5 16-17 1.6002128283061648E-4 2.800372449535788E-4 0.0 2.4003192424592473E-4 2.000266035382706E-5 18-19 1.8002394318444352E-4 2.9003857513049233E-4 0.0 2.800372449535788E-4 2.000266035382706E-5 20-21 1.8002394318444352E-4 3.000399053074059E-4 0.0 2.9003857513049233E-4 2.000266035382706E-5 22-23 1.8002394318444352E-4 3.600478863688871E-4 0.0 3.600478863688871E-4 4.000532070765412E-5 24-25 1.8002394318444352E-4 4.000532070765412E-4 0.0 3.9005187689962765E-4 4.000532070765412E-5 26-27 1.8002394318444352E-4 4.200558674303682E-4 0.0 4.200558674303682E-4 4.000532070765412E-5 28-29 1.8002394318444352E-4 4.3005719760728174E-4 0.0 7.000931123839471E-4 4.000532070765412E-5 30-31 1.8002394318444352E-4 4.800638484918494E-4 0.0 0.001380183564414067 4.000532070765412E-5 32-33 1.8002394318444352E-4 5.000665088456765E-4 0.0 0.003270434967850724 6.0007981061481175E-5 34-35 1.9002527336135707E-4 5.900784804378982E-4 0.0 0.005370714305002565 8.001064141530824E-5 36-37 2.000266035382706E-4 7.00093112383947E-4 0.0 0.009021199819576003 8.001064141530824E-5 38-39 2.000266035382706E-4 7.500997632685147E-4 0.0 0.01422189151157104 8.001064141530824E-5 40-41 2.000266035382706E-4 8.001064141530824E-4 0.0 0.019932651042588664 8.001064141530824E-5 42-43 2.000266035382706E-4 8.101077443299959E-4 0.0 0.025423381309714194 8.001064141530824E-5 44-45 2.100279337151841E-4 8.601143952145635E-4 0.0 0.0317842273022312 8.001064141530824E-5 46-47 2.2002926389209766E-4 9.001197159222177E-4 0.0 0.037975050681740674 8.001064141530824E-5 48-49 2.2002926389209766E-4 9.201223762760447E-4 0.0 0.04422588204231163 1.000133017691353E-4 50-51 2.3003059406901118E-4 0.001000133017691353 0.0 0.05046671207270567 1.000133017691353E-4 52-53 2.400319242459247E-4 0.001000133017691353 0.0 0.05621747692443095 1.3001729229987588E-4 54-55 2.400319242459247E-4 0.001000133017691353 0.0 0.06224827902110981 1.6002128283061648E-4 56-57 2.400319242459247E-4 0.001040138338399007 0.0 0.06869913698521904 1.6002128283061648E-4 58-59 2.400319242459247E-4 0.001040138338399007 0.0 0.07491996435525924 1.6002128283061648E-4 60-61 2.5003325442283825E-4 0.001040138338399007 0.0 0.0809407651217612 1.6002128283061648E-4 62-63 3.6004788636888704E-4 0.0010501396685759206 0.0 0.08699156987879388 1.8002394318444352E-4 64-65 3.6004788636888704E-4 0.0012201622815834507 0.0 0.09287235202281904 1.8002394318444352E-4 66-67 3.6004788636888704E-4 0.0012501662721141912 0.0 0.09873313150649035 2.000266035382706E-4 68-69 3.6004788636888704E-4 0.0012801702626449318 0.0 0.10387381521742392 2.000266035382706E-4 70-71 3.8005054672271413E-4 0.0013101742531756724 0.0 0.10850443108933489 2.2002926389209766E-4 72-73 4.200558674303682E-4 0.001320175583352586 0.0 0.1125149644902772 2.800372449535788E-4 74-75 4.200558674303682E-4 0.001340178243706413 0.0 0.11592541808060472 2.800372449535788E-4 76-77 4.200558674303682E-4 0.001400186224767894 0.0 0.11916584905792471 2.800372449535788E-4 78-79 4.200558674303682E-4 0.0014301902152986346 0.0 0.12115611376313049 2.800372449535788E-4 80-81 4.200558674303682E-4 0.0014501928756524619 0.0 0.12177619623409913 3.0003990530740586E-4 82-83 4.200558674303682E-4 0.0014601942058293754 0.0 0.1223362707240063 3.300438958381465E-4 84-85 4.200558674303682E-4 0.0014801968661832024 0.0 0.12259630530860605 3.4004522601506E-4 86-87 4.200558674303682E-4 0.001490198196360116 0.0 0.12267631595002135 3.4004522601506E-4 88 4.200558674303682E-4 0.0015602075075985106 0.0 0.12269631861037518 3.8005054672271413E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6780 0.0 47.86821 1 GTATCAA 12440 0.0 37.866627 1 CTTATAC 4385 0.0 37.492085 1 TCAACGC 14345 0.0 32.242554 4 ATCAACG 14395 0.0 32.01222 3 TATCAAC 14615 0.0 31.706766 2 CAACGCA 14795 0.0 31.29066 5 AACGCAG 15475 0.0 29.943214 6 TATACAC 6730 0.0 28.730352 3 ACGCAGA 17465 0.0 26.482647 7 TTATACA 6920 0.0 25.973364 2 CGCAGAG 17855 0.0 25.904198 8 GTGGTAT 3435 0.0 24.178522 1 TGGTATC 3260 0.0 23.386074 2 GATCAAC 2035 0.0 22.394493 1 GCAGAGT 20725 0.0 22.255333 9 TACACAT 9065 0.0 21.658747 5 ACACATC 8720 0.0 20.952747 6 ACATCTC 8870 0.0 20.646431 8 GTACATG 15110 0.0 20.154104 1 >>END_MODULE