##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140113_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5436895 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.259125475110334 25.0 18.0 33.0 18.0 33.0 2 29.166461923579543 30.0 27.0 32.0 25.0 33.0 3 28.01033494301435 29.0 27.0 31.0 18.0 33.0 4 31.553840381320587 33.0 31.0 33.0 29.0 33.0 5 32.11844131622921 33.0 33.0 33.0 31.0 33.0 6 36.473806832760246 38.0 37.0 38.0 34.0 38.0 7 36.67805870814132 38.0 37.0 38.0 34.0 38.0 8 36.93601090328211 38.0 38.0 38.0 35.0 38.0 9 37.30810508571528 38.0 38.0 38.0 36.0 38.0 10-11 37.31320533135181 38.0 38.0 38.0 36.5 38.0 12-13 37.41854394833816 38.0 38.0 38.0 37.0 38.0 14-15 37.370945364955546 38.0 38.0 38.0 37.0 38.0 16-17 37.456199172505634 38.0 38.0 38.0 37.0 38.0 18-19 37.47418646120626 38.0 38.0 38.0 37.0 38.0 20-21 37.49368224575183 38.0 38.0 38.0 37.0 38.0 22-23 37.511749896114765 38.0 38.0 38.0 37.0 38.0 24-25 37.519120356452206 38.0 38.0 38.0 37.5 38.0 26-27 37.483921327925415 38.0 38.0 38.0 37.0 38.0 28-29 37.46358654036091 38.0 38.0 38.0 37.0 38.0 30-31 37.46678536306524 38.0 38.0 38.0 37.0 38.0 32-33 37.454301543719204 38.0 38.0 38.0 37.0 38.0 34-35 37.42016237963841 38.0 38.0 38.0 37.0 38.0 36-37 37.39488939898573 38.0 38.0 38.0 37.0 38.0 38-39 37.37343679191011 38.0 38.0 38.0 37.0 38.0 40-41 37.38570120014969 38.0 38.0 38.0 37.0 38.0 42-43 37.3487635632991 38.0 38.0 38.0 37.0 38.0 44-45 37.30469598144367 38.0 38.0 38.0 37.0 38.0 46-47 37.26758464844367 38.0 38.0 38.0 37.0 38.0 48-49 37.21687411342326 38.0 38.0 38.0 37.0 38.0 50-51 37.18279107332378 38.0 38.0 38.0 37.0 38.0 52-53 37.148992693903345 38.0 38.0 38.0 37.0 38.0 54-55 37.132756603093625 38.0 38.0 38.0 36.0 38.0 56-57 37.091458214217894 38.0 38.0 38.0 36.0 38.0 58-59 37.05753390325421 38.0 38.0 38.0 36.0 38.0 60-61 37.08052346806416 38.0 38.0 38.0 36.0 38.0 62-63 37.09326998187089 38.0 38.0 38.0 36.0 38.0 64-65 37.10430767223352 38.0 38.0 38.0 36.0 38.0 66-67 37.097919394171 38.0 38.0 38.0 36.0 38.0 68-69 37.06111755436155 38.0 38.0 38.0 36.0 38.0 70-71 37.057560394855884 38.0 38.0 38.0 36.0 38.0 72-73 37.07105213241414 38.0 38.0 38.0 36.0 38.0 74-75 37.086549168684385 38.0 38.0 38.0 36.0 38.0 76-77 37.07087538570099 38.0 38.0 38.0 36.0 38.0 78-79 37.03468617591777 38.0 38.0 38.0 36.0 38.0 80-81 36.990329466947436 38.0 38.0 38.0 36.0 38.0 82-83 36.951452238686485 38.0 38.0 38.0 36.0 38.0 84-85 36.92882474585753 38.0 38.0 38.0 35.5 38.0 86-87 36.95321048456505 38.0 38.0 38.0 36.0 38.0 88-89 36.910614878289365 38.0 38.0 38.0 35.0 38.0 90-91 36.92283826047429 38.0 38.0 38.0 35.0 38.0 92-93 36.91281720900736 38.0 38.0 38.0 35.0 38.0 94-95 36.92945269711941 38.0 38.0 38.0 35.0 38.0 96-97 36.932331559483664 38.0 38.0 38.0 35.0 38.0 98-99 36.91708205136447 38.0 38.0 38.0 35.0 38.0 100 35.39135766834454 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 6.0 20 18.0 21 75.0 22 302.0 23 871.0 24 2130.0 25 4212.0 26 7744.0 27 13364.0 28 21319.0 29 31319.0 30 42002.0 31 55086.0 32 71070.0 33 96456.0 34 149866.0 35 298946.0 36 1036679.0 37 3605429.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 48.05034859050984 18.523421916369546 11.505445663379557 21.920783829741055 2 14.718046025554058 20.141366934528584 41.73591296964739 23.404674070269976 3 19.30640786156188 25.492506369457214 29.83446032690784 25.366625442073072 4 12.946505674142248 17.80011870829047 38.58731248587189 30.666063131695388 5 13.794472764325963 37.59040776031172 34.82046278252569 13.794656692836629 6 30.230747513056627 37.16945057794936 18.678694365074183 13.921107543919828 7 27.05045802797369 32.71913472671442 22.2296365848522 18.000770660459693 8 24.51505868698954 36.56267042126066 20.91009666362878 18.012174228121015 9 25.642485278821823 17.43736084658615 20.97068271504232 35.94947115954971 10-11 24.485860035921238 26.688459129705468 28.31268582527343 20.512995009099864 12-13 25.43909713172684 24.0761960641138 28.574250560292224 21.91045624386713 14-15 22.581694147118895 25.49765077309751 26.267538733045242 25.653116346738347 16-17 22.050628161846053 28.786835132920537 26.915344144038094 22.247192561195313 18-19 22.086153953681283 27.6419813147026 28.849977790632337 21.42188694098378 20-21 22.882903131823827 26.745556971412764 28.81694707506136 21.55459282170205 22-23 22.56028707579517 26.7847003272074 28.73325726881792 21.92175532817951 24-25 22.404286997732996 26.94202733795269 28.81625060795563 21.837435056358682 26-27 22.31855830517667 27.09788768903415 28.765891820272728 21.817662185516454 28-29 22.121171131379608 27.14618162143062 28.82536273492193 21.90728451226784 30-31 22.746244796727307 26.870601459776296 28.733855036843497 21.649298706652903 32-33 22.083233316140067 27.263805533537163 28.7323024940758 21.920658656246975 34-35 22.342463577149157 27.184304681834913 28.821839822267574 21.651391918748352 36-37 22.231537897196745 27.10506623184848 28.776240737846038 21.887155133108735 38-39 22.07707709016649 27.016817648406015 28.95867993378149 21.947425327646002 40-41 22.36618519070217 26.80780918646554 28.886603082830813 21.939402540001478 42-43 22.385454766922425 26.871529956849184 28.71452786985832 22.028487406370072 44-45 22.28238878884593 27.104289834068005 28.587133803802516 22.026187573283543 46-47 22.529893371299575 26.880215573431382 28.199295869056822 22.39059518621222 48-49 22.371585121115785 27.008813585085058 28.268073045404922 22.35152824839424 50-51 22.248909336052122 27.231990033799512 28.302459487146812 22.21664114300155 52-53 22.493142193619832 27.17164196884958 28.27901205056041 22.056203786970176 54-55 22.402552923776845 27.11238540824193 28.13763401009674 22.347427657884484 56-57 22.54099418566609 27.41680451956057 27.86009820555452 22.18210308921882 58-59 22.289808870596225 27.64430827544553 28.12447555340941 21.94140730054883 60-61 22.49340782886976 27.78093354423939 27.823612713304257 21.902045913586587 62-63 22.304406332692118 27.963225689390043 27.796497035706984 21.935870942210858 64-65 22.26531227699732 27.881193334090458 27.834948019831963 22.018546369080262 66-67 22.42583461904125 27.848731517937807 27.675883849462313 22.049550013558626 68-69 22.336925391350192 27.644088806815052 27.881731196363525 22.13725460547123 70-71 22.371762003492403 27.35677599139982 28.00741614235861 22.26404586274916 72-73 22.553351052970342 27.285184762613223 27.900807559069847 22.260656625346588 74-75 22.289578889525195 27.397624002939757 27.974561011580374 22.338236095954677 76-77 22.515240729110346 27.24277087878671 27.881237209299247 22.360751182803696 78-79 22.439556379056818 27.371801757671033 27.794371120244506 22.39427074302764 80-81 22.52258763841585 27.36774472174524 27.728811437408275 22.380856202430635 82-83 22.513315121333626 27.369242851907682 27.82914685265039 22.288295174108303 84-85 22.635945619454734 27.308776897228455 27.74426513341724 22.311012349899578 86-87 22.415436803281207 27.358533570964184 27.82309686047732 22.402932765277285 88-89 22.541658955246884 27.355671231084848 27.733355962614333 22.36931385105393 90-91 22.552803533222548 27.35116849827614 27.773020880632398 22.32300708786891 92-93 22.599820619894132 27.349451663818776 27.701682209667695 22.349045506619404 94-95 22.461085651553304 27.46119470624302 27.69445057035603 22.383269071847653 96-97 22.559797732119655 27.50570097280351 27.776991191409127 22.157510103667704 98-99 23.618618744565246 29.51312456154156 27.916852901245143 18.95140379264805 100 22.603963532683306 30.344580942659015 21.854989615966772 25.196465908690907 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 735.0 1 765.5 2 1103.0 3 1573.0 4 2046.0 5 2859.5 6 3689.5 7 4666.0 8 6306.0 9 7447.5 10 7331.5 11 7153.0 12 7804.0 13 9488.5 14 12627.5 15 16274.5 16 19498.5 17 22255.0 18 22955.0 19 21328.5 20 18994.0 21 17187.5 22 16905.0 23 18740.0 24 23048.0 25 29746.0 26 39135.0 27 49958.0 28 60030.0 29 70431.5 30 80724.0 31 91206.5 32 103655.0 33 116447.5 34 129310.0 35 141397.5 36 154087.5 37 167132.0 38 176360.0 39 183433.0 40 192901.5 41 202049.5 42 208692.5 43 220283.0 44 234442.5 45 242785.0 46 242167.0 47 238381.0 48 235358.0 49 230217.5 50 225539.5 51 220311.5 52 211255.0 53 200667.5 54 190688.0 55 178953.5 56 165153.5 57 149387.5 58 133360.5 59 117567.0 60 99404.0 61 80752.0 62 63425.0 63 48784.0 64 37395.0 65 27772.0 66 20320.5 67 15483.0 68 11846.0 69 8640.0 70 6152.0 71 4400.0 72 3070.0 73 2043.0 74 1337.0 75 855.0 76 564.5 77 369.0 78 236.0 79 166.5 80 116.0 81 68.5 82 42.5 83 33.5 84 29.0 85 20.0 86 15.5 87 13.5 88 7.5 89 3.5 90 3.0 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00483731983052827 3 2.0232136173312158E-4 4 6.989283405326018E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 9.196901710964004E-6 24-25 1.287650202096699E-4 26-27 7.818679487583983E-4 28-29 0.0012698321557940509 30-31 7.092233856555979E-4 32-33 7.013843943633428E-4 34-35 0.001036286784595486 36-37 0.0 38-39 2.148248780285054E-4 40-41 7.048461461832111E-4 42-43 2.9316896452816297E-4 44-45 0.0 46-47 0.0 48-49 0.001483159020141784 50-51 0.003654713246215002 52-53 0.0 54-55 0.003967830024510278 56-57 0.03960430102709154 58-59 0.05709579385241388 60-61 0.03073298630118591 62-63 0.006834525065158884 64-65 0.0 66-67 0.0 68-69 8.459275198726879E-5 70-71 0.00376548354531829 72-73 0.008269538462337772 74-75 0.006053101433262972 76-77 0.007236347378649708 78-79 0.010428871752063824 80-81 0.011515971233711739 82-83 0.04421532636494634 84-85 0.026138542544267847 86-87 0.0012063119344035407 88-89 0.0016526290867407577 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 33.0 20-21 165.0 22-23 375.0 24-25 426.0 26-27 1378.0 28-29 3649.0 30-31 10112.0 32-33 12939.0 34-35 17801.0 36-37 28472.0 38-39 33251.0 40-41 32628.0 42-43 37006.0 44-45 44123.0 46-47 45732.0 48-49 42284.0 50-51 38821.0 52-53 37314.0 54-55 40342.0 56-57 42151.0 58-59 41937.0 60-61 43400.0 62-63 41794.0 64-65 47335.0 66-67 51612.0 68-69 52333.0 70-71 58920.0 72-73 43877.0 74-75 42981.0 76-77 44684.0 78-79 45900.0 80-81 45630.0 82-83 43102.0 84-85 42884.0 86-87 44314.0 88-89 45693.0 90-91 46872.0 92-93 45852.0 94-95 53540.0 96-97 167856.0 98-99 366252.0 100-101 3551125.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.8374929110943 #Duplication Level Percentage of deduplicated Percentage of total 1 91.48277271639856 80.3561739996391 2 6.195768438705455 10.884415326271444 3 1.3554342498060117 3.571738389263699 4 0.455521618253646 1.6004750765681932 5 0.2064412786213764 0.9066642173731196 6 0.10516260988758225 0.5542332000307608 7 0.06339517316229144 0.38979311512682585 8 0.034528078197479224 0.24262878591238324 9 0.02551815562310741 0.20173057322840088 >10 0.07314698056573 0.9903033713731851 >50 0.001415073686112083 0.0848513199945383 >100 7.744304766546064E-4 0.1304172295817692 >500 9.089746479456309E-5 0.05208363237325691 >1k 3.02991512868575E-5 0.03449176326337489 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.8392851066647416E-5 0.0 0.0 0.0 3 0.0 1.8392851066647416E-5 0.0 0.0 0.0 4 0.0 3.678570213329483E-5 0.0 1.8392851066647416E-5 0.0 5 1.8392851066647416E-5 3.678570213329483E-5 0.0 1.8392851066647416E-5 0.0 6 1.8392851066647416E-5 3.678570213329483E-5 0.0 1.8392851066647416E-5 1.8392851066647416E-5 7 1.8392851066647416E-5 5.517855319994225E-5 0.0 1.8392851066647416E-5 1.8392851066647416E-5 8 1.8392851066647416E-5 5.517855319994225E-5 0.0 1.8392851066647416E-5 5.517855319994225E-5 9 1.8392851066647416E-5 1.2874995746653192E-4 0.0 5.517855319994225E-5 5.517855319994225E-5 10-11 5.517855319994225E-5 1.2874995746653192E-4 0.0 5.517855319994225E-5 5.517855319994225E-5 12-13 5.517855319994225E-5 1.2874995746653192E-4 0.0 5.517855319994225E-5 5.517855319994225E-5 14-15 6.437497873326596E-5 1.9312493619979786E-4 0.0 5.517855319994225E-5 9.196425533323707E-5 16-17 7.357140426658966E-5 2.0232136173312158E-4 0.0 7.357140426658966E-5 1.4714280853317933E-4 18-19 7.357140426658966E-5 2.1151778726644527E-4 0.0 7.357140426658966E-5 1.6553565959982674E-4 20-21 7.357140426658966E-5 2.20714212799769E-4 0.0 7.357140426658966E-5 1.6553565959982674E-4 22-23 7.357140426658966E-5 2.391070638664164E-4 0.0 7.357140426658966E-5 1.6553565959982674E-4 24-25 8.276782979991337E-5 2.7589276599971127E-4 0.0 9.196425533323707E-5 1.6553565959982674E-4 26-27 1.0116068086656079E-4 2.9428561706635865E-4 0.0 2.299106383330927E-4 1.6553565959982674E-4 28-29 1.103571063998845E-4 2.9428561706635865E-4 0.0 5.241962553994514E-4 1.6553565959982674E-4 30-31 1.103571063998845E-4 3.494641702663009E-4 0.0 0.0016185708938649727 1.7473208513315045E-4 32-33 1.2874995746653192E-4 3.494641702663009E-4 0.0 0.0044418735325953505 1.8392851066647415E-4 34-35 1.3794638299985564E-4 4.3223200006621424E-4 0.0 0.007743390299058562 2.0232136173312158E-4 36-37 1.4714280853317933E-4 5.05803404332804E-4 0.0 0.012507138725320242 2.1151778726644527E-4 38-39 1.6553565959982674E-4 5.149998298661277E-4 0.0 0.019818297024312592 2.483034893997401E-4 40-41 1.8392851066647415E-4 5.425891064660987E-4 0.0 0.02803070502557066 2.5749991493306384E-4 42-43 1.8392851066647415E-4 5.793748085993936E-4 0.0 0.03617873804809547 2.5749991493306384E-4 44-45 1.9312493619979786E-4 6.345533617993359E-4 0.0 0.04533837787928588 2.5749991493306384E-4 46-47 2.0232136173312158E-4 6.89731914999278E-4 0.0 0.05451641056154294 2.7589276599971127E-4 48-49 2.0232136173312158E-4 6.989283405326018E-4 0.0 0.06382319320126653 2.9428561706635865E-4 50-51 2.0232136173312158E-4 8.276782979991337E-4 0.0 0.07263336886219066 3.0348204259968235E-4 52-53 2.20714212799769E-4 8.552675745991048E-4 0.0 0.08152631235291467 3.310713191996535E-4 54-55 2.20714212799769E-4 8.920532767323997E-4 0.0 0.08947202401370635 3.586605957996246E-4 56-57 2.20714212799769E-4 9.196425533323707E-4 0.0 0.09536693278056685 3.678570213329483E-4 58-59 2.20714212799769E-4 9.196425533323707E-4 0.0 0.1015561271644937 3.77053446866272E-4 60-61 2.20714212799769E-4 9.196425533323707E-4 0.0 0.10754300018668744 3.8624987239959573E-4 62-63 2.20714212799769E-4 9.288389788656944E-4 0.0 0.11366781959188103 3.8624987239959573E-4 64-65 2.20714212799769E-4 0.0010116068086656077 0.0 0.11947076410340829 3.8624987239959573E-4 66-67 2.20714212799769E-4 0.0010116068086656077 0.0 0.12558638708306855 3.954462979329195E-4 68-69 2.20714212799769E-4 0.0010208032341989315 0.0 0.13085593891366304 4.0464272346624316E-4 70-71 2.20714212799769E-4 0.0010299996597322553 0.0 0.13538977670159164 4.2303557453289055E-4 72-73 2.20714212799769E-4 0.001039196085265579 0.0 0.1393810253830541 4.2303557453289055E-4 74-75 2.20714212799769E-4 0.0010575889363322265 0.0 0.142673345723984 4.2303557453289055E-4 76-77 2.20714212799769E-4 0.0010759817873988737 0.0 0.14568057687338087 4.2303557453289055E-4 78-79 2.20714212799769E-4 0.0010851782129321975 0.0 0.1473727191715124 4.2303557453289055E-4 80-81 2.20714212799769E-4 0.0010943746384655213 0.0 0.14792450470351184 4.506248511328617E-4 82-83 2.20714212799769E-4 0.0011035710639988449 0.0 0.14831995100144477 4.966069787994802E-4 84-85 2.20714212799769E-4 0.0011035710639988449 0.0 0.14844870095891127 4.966069787994802E-4 86-87 2.20714212799769E-4 0.0011587496171987872 0.0 0.1486050401929778 5.149998298661277E-4 88 2.20714212799769E-4 0.001195535319332082 0.0 0.14863262946957775 5.149998298661277E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7535 0.0 50.313854 1 GTATCAA 13475 0.0 37.6499 1 TCAACGC 15900 0.0 31.369574 4 TATCAAC 16025 0.0 31.313246 2 ATCAACG 16050 0.0 31.05015 3 CTTATAC 4715 0.0 30.626602 1 CAACGCA 16300 0.0 30.573639 5 GTGGTAT 3265 0.0 30.0072 1 AACGCAG 16865 0.0 29.549381 6 TGGTATC 3280 0.0 27.79206 2 TATACAC 6690 0.0 27.759602 3 ACGCAGA 19815 0.0 25.128656 7 CGCAGAG 20315 0.0 24.510183 8 GATCAAC 2245 0.0 23.33832 1 TTATACA 7365 0.0 22.440874 2 GCAGAGT 23800 0.0 20.867502 9 GAGTACT 13450 0.0 20.378635 12-13 GTACATG 18200 0.0 19.964502 1 TACACAT 9115 0.0 19.906816 5 TACATGG 17820 0.0 19.67311 2 >>END_MODULE