##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140112_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5631146 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.25141436574367 25.0 18.0 33.0 18.0 33.0 2 29.320070195303053 31.0 27.0 33.0 25.0 33.0 3 28.171381278340146 29.0 27.0 31.0 18.0 33.0 4 31.578284953009565 33.0 31.0 33.0 29.0 33.0 5 32.12805723737229 33.0 33.0 33.0 31.0 33.0 6 36.51981745811599 38.0 37.0 38.0 34.0 38.0 7 36.6470618946836 38.0 37.0 38.0 34.0 38.0 8 36.94060143352703 38.0 38.0 38.0 35.0 38.0 9 37.302686167256184 38.0 38.0 38.0 36.0 38.0 10-11 37.3061421245338 38.0 38.0 38.0 36.5 38.0 12-13 37.42067440623987 38.0 38.0 38.0 37.0 38.0 14-15 37.37611606944661 38.0 38.0 38.0 37.0 38.0 16-17 37.46566089744432 38.0 38.0 38.0 37.0 38.0 18-19 37.47864644248258 38.0 38.0 38.0 37.0 38.0 20-21 37.49745762713141 38.0 38.0 38.0 37.0 38.0 22-23 37.51753796586455 38.0 38.0 38.0 37.5 38.0 24-25 37.527930448796766 38.0 38.0 38.0 37.5 38.0 26-27 37.488847338861675 38.0 38.0 38.0 37.0 38.0 28-29 37.46113699040238 38.0 38.0 38.0 37.0 38.0 30-31 37.472156822429525 38.0 38.0 38.0 37.0 38.0 32-33 37.46233221201632 38.0 38.0 38.0 37.0 38.0 34-35 37.42895734356337 38.0 38.0 38.0 37.0 38.0 36-37 37.40274146985983 38.0 38.0 38.0 37.0 38.0 38-39 37.38458965777391 38.0 38.0 38.0 37.0 38.0 40-41 37.40621511151403 38.0 38.0 38.0 37.0 38.0 42-43 37.37082950936192 38.0 38.0 38.0 37.0 38.0 44-45 37.334385256414535 38.0 38.0 38.0 37.0 38.0 46-47 37.30826872507893 38.0 38.0 38.0 37.0 38.0 48-49 37.26511271405895 38.0 38.0 38.0 37.0 38.0 50-51 37.23420418352849 38.0 38.0 38.0 37.0 38.0 52-53 37.203142144805206 38.0 38.0 38.0 37.0 38.0 54-55 37.185006255824234 38.0 38.0 38.0 37.0 38.0 56-57 37.14471269201047 38.0 38.0 38.0 36.5 38.0 58-59 37.113312836346424 38.0 38.0 38.0 36.0 38.0 60-61 37.13358976910977 38.0 38.0 38.0 36.0 38.0 62-63 37.146411240051336 38.0 38.0 38.0 36.0 38.0 64-65 37.151584718586065 38.0 38.0 38.0 36.0 38.0 66-67 37.14656347122823 38.0 38.0 38.0 36.0 38.0 68-69 37.108002166472886 38.0 38.0 38.0 36.0 38.0 70-71 37.107317921763375 38.0 38.0 38.0 36.0 38.0 72-73 37.117529050027734 38.0 38.0 38.0 36.0 38.0 74-75 37.13449924482882 38.0 38.0 38.0 36.0 38.0 76-77 37.119154840592856 38.0 38.0 38.0 36.0 38.0 78-79 37.08264755329885 38.0 38.0 38.0 36.0 38.0 80-81 37.04028660650093 38.0 38.0 38.0 36.0 38.0 82-83 37.0050321242256 38.0 38.0 38.0 36.0 38.0 84-85 36.98168727461611 38.0 38.0 38.0 36.0 38.0 86-87 37.00277852614272 38.0 38.0 38.0 36.0 38.0 88-89 36.96309593822267 38.0 38.0 38.0 36.0 38.0 90-91 36.978282149682414 38.0 38.0 38.0 36.0 38.0 92-93 36.964151178669916 38.0 38.0 38.0 36.0 38.0 94-95 36.98065019193534 38.0 38.0 38.0 36.0 38.0 96-97 36.9812701578591 38.0 38.0 38.0 36.0 38.0 98-99 36.96360734200579 38.0 38.0 38.0 35.0 38.0 100 35.45407515415067 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 7.0 20 24.0 21 76.0 22 311.0 23 882.0 24 2112.0 25 4323.0 26 7927.0 27 13149.0 28 20888.0 29 30577.0 30 40909.0 31 53453.0 32 69432.0 33 96362.0 34 150499.0 35 304634.0 36 1053475.0 37 3782101.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.55866745419139 18.970312614874484 11.17115414872923 22.2998657822049 2 14.483067512750846 20.29774438921056 41.999480358307686 23.219707739730904 3 19.19485219689086 25.5176038954812 29.927510237713857 25.360033669914085 4 12.811280653912243 17.95882574818525 38.82593287412104 30.403960723781466 5 13.726726318230783 37.53452671978315 35.12336565239118 13.615381309594884 6 30.13883852416542 37.50858173451727 18.697615014776744 13.654964726540566 7 26.886196877154312 32.706468630008885 22.37937002521334 18.027964467623462 8 24.21611870834107 36.992043893019286 21.009275909379724 17.782561489259912 9 25.281621183325736 17.713623479128405 21.18250885343765 35.822246484108206 10-11 24.23520008183059 26.90874113368753 28.54012309394926 20.31593569053262 12-13 25.149525513989513 24.205410408467475 28.75622475425073 21.888839323292274 14-15 22.294351806896856 25.7897859512078 26.341636320564234 25.574225921331113 16-17 21.950966996771175 29.059271416510956 27.020201571758218 21.969560014959654 18-19 21.927481546385053 27.97520256089968 28.751731885481213 21.34558400723405 20-21 22.6828524380991 27.113913811344275 28.725070823479165 21.478162927077456 22-23 22.289056169107763 27.18700179776806 28.621833105393463 21.90210892773072 24-25 22.183531250485636 27.269871081895296 28.792201420385798 21.754396247233267 26-27 22.137651491064624 27.48536822342257 28.711968482398348 21.66501180311446 28-29 21.818228499990404 27.357399835537887 28.871824740531526 21.952546923940183 30-31 22.381954579131897 27.102980004190023 28.945017124682415 21.570048291995665 32-33 21.97844648710811 27.51373755361339 28.71280116019273 21.795014799085774 34-35 22.064545390723765 27.528477667759976 28.90907314295167 21.49790379856459 36-37 22.30308308603931 27.28924600718666 28.68104087539528 21.72663003137875 38-39 21.940527160052163 27.33303016052531 28.86090030062433 21.865542378798196 40-41 22.262400110016976 27.16922267761261 28.773912115048294 21.794465097322117 42-43 22.277261658818315 27.189561801478856 28.707912105626303 21.825264434076526 44-45 22.163519706286557 27.44407036749673 28.562800944005357 21.82960898221135 46-47 22.422284832778256 27.213652216907004 28.129090503781303 22.23497244653344 48-49 22.257186171669158 27.28591664459795 28.30015171305585 22.156745470677038 50-51 22.110122351885604 27.584167579294995 28.28108889596791 22.024621172851493 52-53 22.29259595241196 27.585561372445007 28.275493740504626 21.846348934638407 54-55 22.260915938019323 27.533707271987197 28.089249863043886 22.116126926949597 56-57 22.421008519665346 27.838130698523827 27.821001671912594 21.919859109898233 58-59 22.08695696158795 28.0644601492654 28.126511398792164 21.72207149035448 60-61 22.338649989914522 28.21697358703219 27.779962310916883 21.664414112136402 62-63 22.12970573144312 28.4022129527574 27.732380626607377 21.7357006891921 64-65 22.099369512589877 28.368029477727656 27.761664855793455 21.77093615388901 66-67 22.318596613520402 28.30581323242008 27.597149329613224 21.778440824446292 68-69 22.211692631630903 28.142628148420386 27.76277767177937 21.882901548169343 70-71 22.236527064111993 27.78150817972595 27.935333952254478 22.04663080390758 72-73 22.411298501923294 27.66102406245579 27.91575817589495 22.01191925972596 74-75 22.183820026117193 27.78392859137214 27.91399828006675 22.11825310244392 76-77 22.2826394475745 27.65147051253198 27.89013178858859 22.17575825130493 78-79 22.289016978414917 27.769742641458684 27.747108908538447 22.19413147158795 80-81 22.349598590263852 27.688742013640272 27.75701281442171 22.20464658167417 82-83 22.361221049039226 27.637835842550025 27.911425012682617 22.089518095728135 84-85 22.523658174420163 27.58031202352067 27.81219955369539 22.08383024836378 86-87 22.273048349556866 27.6093259491184 27.94250095771746 22.17512474360727 88-89 22.39095133650694 27.647829327579316 27.798467951991267 22.162751383922476 90-91 22.421229806510603 27.664903506484436 27.81935889595909 22.09450779104588 92-93 22.403297842932325 27.65581563382078 27.802459531535938 22.138426991710954 94-95 22.293194724336278 27.743594208730975 27.80392479090884 22.15928627602391 96-97 22.37943555678076 27.825278116190766 27.899039302345574 21.896247024682904 98-99 23.44498808918871 29.76603777258542 28.072277751639508 18.716696386586364 100 22.443996680643426 30.608320524083872 21.999314374832416 24.94836842044029 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 612.0 1 651.5 2 861.0 3 1149.5 4 1609.5 5 2419.0 6 3099.5 7 3733.0 8 4689.5 9 5427.5 10 5537.0 11 5588.5 12 6275.5 13 7903.0 14 10750.0 15 14204.5 16 17501.5 17 20373.5 18 21389.0 19 20112.5 20 18149.0 21 16546.5 22 16519.5 23 18816.5 24 23582.5 25 30823.5 26 40882.0 27 52628.0 28 63801.5 29 75817.5 30 87744.0 31 99116.0 32 112265.0 33 125870.5 34 140168.5 35 154307.0 36 169514.0 37 183912.0 38 193727.5 39 201848.0 40 211446.0 41 220631.0 42 228487.5 43 240744.5 44 253324.5 45 259933.0 46 258071.0 47 252429.0 48 246453.0 49 239015.0 50 232440.5 51 224586.0 52 212953.5 53 199608.0 54 187494.5 55 173097.5 56 157161.5 57 141847.5 58 126292.5 59 110300.0 60 92955.5 61 75224.5 62 58772.5 63 44883.0 64 33678.0 65 24963.5 66 18430.5 67 14012.5 68 10592.0 69 7618.5 70 5478.5 71 3862.0 72 2636.5 73 1777.5 74 1234.0 75 814.0 76 499.5 77 290.5 78 180.0 79 106.5 80 63.5 81 43.5 82 31.0 83 22.0 84 16.5 85 13.5 86 10.5 87 6.5 88 4.0 89 3.0 90 2.0 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006091122481995672 3 1.0655024749846657E-4 4 9.58952227486199E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.775923871116232E-5 24-25 5.328108944909218E-5 26-27 7.726584076291759E-4 28-29 0.001519154809781829 30-31 8.803243506162936E-4 32-33 7.750951072878629E-4 34-35 8.842392394113469E-4 36-37 0.0 38-39 1.2622166796885355E-4 40-41 9.07123852250207E-4 42-43 3.9249978549430327E-4 44-45 0.0 46-47 0.0 48-49 0.0018514933977428613 50-51 0.003920535273696714 52-53 0.0 54-55 0.004150592683595347 56-57 0.03969156080482955 58-59 0.05767952911416279 60-61 0.03167877292714412 62-63 0.007313817087075891 64-65 0.0 66-67 0.0 68-69 2.039519982655922E-5 70-71 0.0035697778071246988 72-73 0.008674823157831883 74-75 0.006100101721039925 76-77 0.007125614371534639 78-79 0.01096654344969219 80-81 0.011925077526567478 82-83 0.04432836930135464 84-85 0.02651970294390839 86-87 0.001307866672717879 88-89 0.0016490122585990062 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 39.0 20-21 151.0 22-23 367.0 24-25 462.0 26-27 1290.0 28-29 3486.0 30-31 10221.0 32-33 13006.0 34-35 18548.0 36-37 29134.0 38-39 34330.0 40-41 33504.0 42-43 37981.0 44-45 45039.0 46-47 45707.0 48-49 42641.0 50-51 38818.0 52-53 38039.0 54-55 41431.0 56-57 43093.0 58-59 43766.0 60-61 47029.0 62-63 43941.0 64-65 48382.0 66-67 53965.0 68-69 54465.0 70-71 61230.0 72-73 44564.0 74-75 43898.0 76-77 45756.0 78-79 46977.0 80-81 47174.0 82-83 44377.0 84-85 44029.0 86-87 45659.0 88-89 47314.0 90-91 47781.0 92-93 46965.0 94-95 54884.0 96-97 170975.0 98-99 374831.0 100-101 3695897.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.69971956298325 #Duplication Level Percentage of deduplicated Percentage of total 1 91.16678934679481 79.95301859171474 2 6.441371081765866 11.298128749439531 3 1.4247874310444049 3.7486037441837294 4 0.4731530239119213 1.6598155002981205 5 0.20135736449603797 0.8829492199121965 6 0.10177251942557733 0.5355252847704838 7 0.057096123931717736 0.35051198398614875 8 0.03991972187776519 0.28007587309698356 9 0.024791989959142217 0.19568255101425616 >10 0.06710202853578615 0.8868667836390034 >50 0.0010796031911083433 0.06229761351308639 >100 7.505180081448967E-4 0.12561969049573507 >500 2.9247057777831828E-5 0.02090441393603949 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.775837458307776E-5 0.0 1.775837458307776E-5 0.0 5 0.0 1.775837458307776E-5 0.0 1.775837458307776E-5 0.0 6 0.0 1.775837458307776E-5 0.0 1.775837458307776E-5 0.0 7 0.0 1.775837458307776E-5 0.0 3.551674916615552E-5 0.0 8 1.775837458307776E-5 1.775837458307776E-5 0.0 3.551674916615552E-5 0.0 9 1.775837458307776E-5 3.551674916615552E-5 0.0 5.327512374923328E-5 0.0 10-11 1.775837458307776E-5 3.551674916615552E-5 0.0 7.103349833231104E-5 0.0 12-13 1.775837458307776E-5 5.327512374923328E-5 0.0 1.0655024749846656E-4 0.0 14-15 1.775837458307776E-5 1.0655024749846656E-4 0.0 1.0655024749846656E-4 0.0 16-17 1.775837458307776E-5 1.2430862208154432E-4 0.0 1.0655024749846656E-4 0.0 18-19 1.775837458307776E-5 1.4206699666462208E-4 0.0 1.1542943479000544E-4 0.0 20-21 1.775837458307776E-5 1.5982537124769984E-4 0.0 1.331878093730832E-4 0.0 22-23 1.775837458307776E-5 1.775837458307776E-4 0.0 1.5982537124769984E-4 0.0 24-25 1.775837458307776E-5 1.9534212041385536E-4 0.0 1.775837458307776E-4 0.0 26-27 1.775837458307776E-5 2.1310049499693312E-4 0.0 2.3973805687154976E-4 0.0 28-29 1.775837458307776E-5 2.21979682288472E-4 0.0 5.860263612415661E-4 0.0 30-31 1.775837458307776E-5 2.663756187461664E-4 0.0 0.001553857776019304 0.0 32-33 2.663756187461664E-5 2.663756187461664E-4 0.0 0.0036493459768224797 0.0 34-35 3.551674916615552E-5 2.9301318062078304E-4 0.0 0.006517323471989538 0.0 36-37 3.551674916615552E-5 3.196507424953997E-4 0.0 0.010175548636103557 0.0 38-39 3.551674916615552E-5 3.3740911707847744E-4 0.0 0.016053570623102295 0.0 40-41 5.327512374923328E-5 3.995634281192496E-4 0.0 0.022162451479681045 0.0 42-43 7.103349833231104E-5 4.2620098999386624E-4 0.0 0.02863537901521289 0.0 44-45 9.767106020692768E-5 4.7059692645156064E-4 0.0 0.0356499369755286 0.0 46-47 1.2430862208154432E-4 4.972344883261773E-4 0.0 0.04326827967166896 0.0 48-49 1.2430862208154432E-4 4.972344883261773E-4 0.0 0.05066464268552085 0.0 50-51 1.2430862208154432E-4 5.860263612415661E-4 0.0 0.05788342195354196 0.0 52-53 1.2430862208154432E-4 5.860263612415661E-4 0.0 0.06492461747573229 0.0 54-55 1.331878093730832E-4 6.215431104077216E-4 0.0 0.07228546374041803 0.0 56-57 1.5982537124769984E-4 6.925766087400326E-4 0.0 0.07940657194823221 0.0 58-59 1.5982537124769984E-4 7.014557960315715E-4 0.0 0.08611923754063561 0.0 60-61 1.5982537124769984E-4 7.36972545197727E-4 0.0 0.09279638638387283 0.0 62-63 1.5982537124769984E-4 7.636101070723437E-4 0.0 0.09931370985586238 0.0 64-65 1.5982537124769984E-4 8.16885230821577E-4 0.0 0.10566232876931267 0.0 66-67 1.5982537124769984E-4 8.16885230821577E-4 0.0 0.11148707563256219 0.0 68-69 1.5982537124769984E-4 8.346436054046547E-4 0.0 0.11755156055268323 0.0 70-71 1.775837458307776E-4 8.701603545708102E-4 0.0 0.12242623437573807 0.0 72-73 1.775837458307776E-4 9.056771037369658E-4 0.0 0.12590687579402132 0.0 74-75 1.775837458307776E-4 9.234354783200435E-4 0.0 0.12888140353668684 0.0 76-77 1.775837458307776E-4 9.500730401946602E-4 0.0 0.1317937769683116 0.0 78-79 1.775837458307776E-4 9.58952227486199E-4 0.0 0.13351633930287016 0.0 80-81 1.775837458307776E-4 9.58952227486199E-4 0.0 0.13405796972765402 0.0 82-83 1.775837458307776E-4 9.678314147777379E-4 0.0 0.13473278796181098 0.0 84-85 1.775837458307776E-4 9.944689766523546E-4 0.0 0.1349902843932656 0.0 86-87 1.775837458307776E-4 0.0010122273512354323 0.0 0.13509683464076405 0.0 88 1.775837458307776E-4 0.0010122273512354323 0.0 0.1351057138280556 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7535 0.0 47.000004 1 GTATCAA 12955 0.0 35.745262 1 TCAACGC 14455 0.0 31.146318 4 ATCAACG 14480 0.0 31.09282 3 CTTATAC 4955 0.0 31.03741 1 TATCAAC 14885 0.0 30.50781 2 CAACGCA 15015 0.0 29.955706 5 AACGCAG 15645 0.0 28.83134 6 TATACAC 7220 0.0 26.327576 3 ACGCAGA 17835 0.0 25.291075 7 CGCAGAG 18105 0.0 24.91391 8 GATCAAC 2540 0.0 22.873459 1 TTATACA 7695 0.0 22.483973 2 GCAGAGT 21705 0.0 20.762 9 GTGGTAT 3980 0.0 20.715761 1 GTACATG 16550 0.0 20.417622 1 GAGTACT 12235 0.0 20.318682 12-13 TACATGG 15940 0.0 20.207365 2 TGGTATC 3690 0.0 20.028406 2 ACATCTC 9120 0.0 19.764877 8 >>END_MODULE