##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140111_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5584097 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.202269229922045 25.0 18.0 33.0 18.0 33.0 2 29.040801404416865 30.0 27.0 32.0 25.0 33.0 3 28.03848016966754 29.0 27.0 31.0 18.0 33.0 4 31.58774319285643 33.0 31.0 33.0 29.0 33.0 5 32.14731029923012 33.0 33.0 33.0 31.0 33.0 6 36.49206433914024 38.0 37.0 38.0 34.0 38.0 7 36.72789387433635 38.0 37.0 38.0 34.0 38.0 8 36.94570366524793 38.0 38.0 38.0 35.0 38.0 9 37.29998655109322 38.0 38.0 38.0 36.0 38.0 10-11 37.30628004850202 38.0 38.0 38.0 36.5 38.0 12-13 37.409074824452375 38.0 38.0 38.0 37.0 38.0 14-15 37.35182608754826 38.0 38.0 38.0 37.0 38.0 16-17 37.43886683916844 38.0 38.0 38.0 37.0 38.0 18-19 37.455875408324744 38.0 38.0 38.0 37.0 38.0 20-21 37.476193186832845 38.0 38.0 38.0 37.0 38.0 22-23 37.491473579348515 38.0 38.0 38.0 37.0 38.0 24-25 37.498798803186574 38.0 38.0 38.0 37.0 38.0 26-27 37.46747804849304 38.0 38.0 38.0 37.0 38.0 28-29 37.44562690972025 38.0 38.0 38.0 37.0 38.0 30-31 37.44940949099802 38.0 38.0 38.0 37.0 38.0 32-33 37.442679301652774 38.0 38.0 38.0 37.0 38.0 34-35 37.413871293571525 38.0 38.0 38.0 37.0 38.0 36-37 37.39025941589298 38.0 38.0 38.0 37.0 38.0 38-39 37.37933563544648 38.0 38.0 38.0 37.0 38.0 40-41 37.37382605443509 38.0 38.0 38.0 37.0 38.0 42-43 37.3350607976486 38.0 38.0 38.0 37.0 38.0 44-45 37.291173057785535 38.0 38.0 38.0 37.0 38.0 46-47 37.2604196828065 38.0 38.0 38.0 37.0 38.0 48-49 37.21390417016124 38.0 38.0 38.0 37.0 38.0 50-51 37.17635537600358 38.0 38.0 38.0 37.0 38.0 52-53 37.14040003057836 38.0 38.0 38.0 36.0 38.0 54-55 37.119349359822294 38.0 38.0 38.0 36.0 38.0 56-57 37.072050682744695 38.0 38.0 38.0 36.0 38.0 58-59 37.03826368038732 38.0 38.0 38.0 36.0 38.0 60-61 37.05969202756705 38.0 38.0 38.0 36.0 38.0 62-63 37.06793560886788 38.0 38.0 38.0 36.0 38.0 64-65 37.071810935313636 38.0 38.0 38.0 36.0 38.0 66-67 37.06182586160477 38.0 38.0 38.0 36.0 38.0 68-69 37.020623220329334 38.0 38.0 38.0 36.0 38.0 70-71 37.01265436190268 38.0 38.0 38.0 36.0 38.0 72-73 37.02295188758298 38.0 38.0 38.0 36.0 38.0 74-75 37.03693974224517 38.0 38.0 38.0 36.0 38.0 76-77 37.0119041163729 38.0 38.0 38.0 36.0 38.0 78-79 36.96773547825951 38.0 38.0 38.0 36.0 38.0 80-81 36.91627191480775 38.0 38.0 38.0 35.5 38.0 82-83 36.872696570554346 38.0 38.0 38.0 35.0 38.0 84-85 36.844424329614625 38.0 38.0 38.0 35.0 38.0 86-87 36.862876535467265 38.0 38.0 38.0 35.0 38.0 88-89 36.81503822143569 38.0 38.0 38.0 35.0 38.0 90-91 36.8252792898092 38.0 38.0 38.0 35.0 38.0 92-93 36.808445074423815 38.0 38.0 38.0 35.0 38.0 94-95 36.82278369688672 38.0 38.0 38.0 35.0 38.0 96-97 36.822182893259196 38.0 38.0 38.0 35.0 38.0 98-99 36.799588089591154 38.0 38.0 38.0 35.0 38.0 100 35.1522755671965 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 8.0 20 19.0 21 89.0 22 313.0 23 919.0 24 2334.0 25 4738.0 26 8651.0 27 14209.0 28 22359.0 29 32825.0 30 44288.0 31 57032.0 32 74637.0 33 102906.0 34 159171.0 35 313121.0 36 1082166.0 37 3664311.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.6615646182364 18.649479047373283 11.908317495201103 21.78063883918922 2 14.528688146592984 20.5431546726263 41.85849137870051 23.0696658020802 3 19.34000622841745 25.499800056696863 29.769614814106454 25.390578900779232 4 12.786785371344905 17.92864109122154 39.35303992404085 29.93153361339271 5 13.755652883536944 37.618365153757175 35.113161537129464 13.512820425576418 6 29.99627334553823 37.62363010527933 19.054737050592067 13.325359498590373 7 26.88354088404983 32.682258205758245 22.838983635133843 17.59521727505808 8 23.973276252185446 37.14403600080729 21.21479981454477 17.66788793246249 9 25.442323082854756 17.69457085004075 21.623639417438486 35.23946664966601 10-11 24.134716857533096 27.040361225816817 28.761812339577915 20.063109577072176 12-13 25.032767160026054 24.426769449026406 29.045403401839188 21.495059989108356 14-15 22.11864335451193 25.9902093391286 26.8056500451192 25.08549726124027 16-17 21.65562310253565 29.07224749140282 27.53700374474154 21.735125661319994 18-19 21.581134783296207 28.248497474166367 29.261848424194635 20.908519318342787 20-21 22.427662572574263 27.37778677965334 29.197828124408186 20.99672252336421 22-23 22.06149010758754 27.268279360474228 29.06860440647764 21.601626125460594 24-25 21.813196663661973 27.313424388737715 29.236649068942043 21.636729878658265 26-27 21.793079112805973 27.536483169760423 29.12575179577933 21.54468592165427 28-29 21.680340961804845 27.64831030434034 29.139910695872338 21.531438037982475 30-31 22.04878359330447 27.44142131105795 29.03897953108356 21.47081556455402 32-33 21.8174134910438 27.542257543419996 29.043682942162423 21.596646023373772 34-35 21.925702251554718 27.631051759687068 29.030408123842488 21.412837864915723 36-37 21.86995844691445 27.533598905029695 29.032196252259308 21.564246395796552 38-39 21.73777125129123 27.69518747144801 29.071808022665113 21.49523325459565 40-41 22.053922516378 27.522121102839648 28.936399915350414 21.487556465431933 42-43 21.89419613636161 27.576815815222844 28.856696960642115 21.672291087773434 44-45 21.95617534973187 27.707824920001606 28.693797111888074 21.642202618378445 46-47 21.98770919749828 27.68746191696769 28.430648439861216 21.894180445672813 48-49 21.972053103980652 27.722884260402864 28.541774515547612 21.76328812006887 50-51 21.969759302634454 27.947624320067355 28.344245565995017 21.73837081130317 52-53 22.10422276693149 27.87666164627639 28.262586228022567 21.75652935876955 54-55 22.02546659555172 27.78985918855794 28.343862581279954 21.840811634610386 56-57 22.072963025343054 27.889454138795845 28.234888113038764 21.802694722822338 58-59 22.042413025046667 27.94622646561094 28.27439394056569 21.7369665687767 60-61 22.13751689246696 27.894005844707227 28.31030925240935 21.658168010416468 62-63 22.08486098278143 27.881252025636567 28.286274918126743 21.747612073455265 64-65 22.01544451082359 27.878354429872214 28.28150748369145 21.82469357561275 66-67 22.133951489063154 27.876744249524098 28.16993688705482 21.819367374357928 68-69 22.051976651453103 27.843770548359526 28.287763026652605 21.816489773534762 70-71 22.029526298339583 27.70839639951318 28.349035525050404 21.913041777096833 72-73 22.08860282714848 27.735605664271834 28.277209966350398 21.89858154222929 74-75 21.944497515789436 27.8472631028784 28.27225191248108 21.935987468851078 76-77 22.044636229608212 27.726180053174982 28.220588283505275 22.008595433711534 78-79 21.989097465955208 27.83283094324344 28.174036952791276 22.004034638010072 80-81 22.0892082967451 27.85151013803181 28.10962970694334 21.949651858279754 82-83 22.111953889706594 27.81832920752725 28.195989655501364 21.873727247264792 84-85 22.265282921322232 27.729760372375033 28.14596983509005 21.85898687121268 86-87 21.995355444275813 27.837819221699174 28.188684272143856 21.978141061881157 88-89 22.10218268004839 27.827268976440156 28.11168046434309 21.95886787916836 90-91 22.152160516606003 27.831663851118076 28.133748594678277 21.882427037597648 92-93 22.185563533628116 27.79591010752152 28.117338715720088 21.901187643130278 94-95 22.053979168329015 27.94973292581247 28.084860091056168 21.91142781480235 96-97 22.1606187925232 28.037257190633095 28.144139108542333 21.657984908301373 98-99 23.198489370842186 29.933474937905842 28.388512146204715 18.479523545047265 100 22.13322061682803 30.847593096989623 22.331216057063 24.687970229119347 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 659.0 1 659.0 2 929.5 3 1324.0 4 1758.0 5 2559.5 6 3268.0 7 4044.5 8 5263.5 9 6064.0 10 5891.5 11 5690.0 12 6296.0 13 7863.5 14 10922.0 15 14453.0 16 17608.5 17 20242.0 18 21138.0 19 20136.0 20 18128.5 21 16595.5 22 16992.0 23 19542.5 24 24456.5 25 32003.5 26 42352.5 27 54303.5 28 65758.0 29 77997.0 30 90038.0 31 102594.0 32 118061.5 33 133040.0 34 147444.0 35 161859.5 36 176810.5 37 190109.0 38 198968.5 39 206817.0 40 216290.0 41 224389.0 42 230298.0 43 235872.5 44 239732.5 45 242637.0 46 244070.0 47 244293.5 48 242631.0 49 236922.0 50 229735.5 51 220193.5 52 207754.5 53 194355.0 54 179607.5 55 164078.5 56 149378.0 57 133631.0 58 117093.0 59 101194.5 60 84019.0 61 67127.0 62 52215.0 63 40001.5 64 30081.5 65 21880.5 66 15936.5 67 12061.5 68 9047.0 69 6469.0 70 4563.0 71 3141.0 72 2104.0 73 1366.0 74 873.5 75 542.5 76 348.5 77 238.5 78 160.0 79 104.0 80 68.5 81 42.0 82 25.5 83 14.5 84 11.0 85 11.5 86 8.5 87 4.0 88 1.0 89 0.0 90 0.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005551479496147721 3 2.5071197724538095E-4 4 7.700439301108129E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 8.954434553873504E-6 24-25 3.581989684227909E-5 26-27 6.537798596039097E-4 28-29 0.001585668708297249 30-31 9.235495542169766E-4 32-33 8.983336091217513E-4 34-35 0.0012877954454907708 36-37 0.0 38-39 2.1810106130702698E-4 40-41 9.78122775799085E-4 42-43 4.322568054235537E-4 44-45 0.0 46-47 0.0 48-49 0.0018269427535021973 50-51 0.003729484277803875 52-53 0.0 54-55 0.003706440301039969 56-57 0.039455383733688384 58-59 0.056931639961921646 60-61 0.030531564903004328 62-63 0.006622814881286044 64-65 0.0 66-67 0.0 68-69 7.140597653742423E-5 70-71 0.003891932764699305 72-73 0.008093536765436215 74-75 0.005522841192640264 76-77 0.007169573851316362 78-79 0.010771967901884347 80-81 0.011331004960953314 82-83 0.042811494989814174 84-85 0.024920196038875506 86-87 0.0010204297806220162 88-89 0.0015011252277873516 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 44.0 20-21 152.0 22-23 333.0 24-25 454.0 26-27 1257.0 28-29 3188.0 30-31 10001.0 32-33 12680.0 34-35 17605.0 36-37 28175.0 38-39 32558.0 40-41 32480.0 42-43 36706.0 44-45 43598.0 46-47 44818.0 48-49 41568.0 50-51 38002.0 52-53 36990.0 54-55 40225.0 56-57 42294.0 58-59 42006.0 60-61 40987.0 62-63 39565.0 64-65 41738.0 66-67 43948.0 68-69 45122.0 70-71 44719.0 72-73 41454.0 74-75 42269.0 76-77 44357.0 78-79 45716.0 80-81 44946.0 82-83 42928.0 84-85 42447.0 86-87 44075.0 88-89 45726.0 90-91 46818.0 92-93 45958.0 94-95 53824.0 96-97 170512.0 98-99 380960.0 100-101 3730894.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.6875632562008 #Duplication Level Percentage of deduplicated Percentage of total 1 92.62853522527944 83.07627612346474 2 5.509509443544564 9.882689534570774 3 1.1308692142428678 3.0427471256069194 4 0.35819693854737356 1.2850324233658015 5 0.15142996711916193 0.6790692377442122 6 0.07416595367124132 0.3991058196807548 7 0.04493770393674547 0.28212472150906986 8 0.027585751688137133 0.19792790795997178 9 0.018442365695968955 0.1488645755956083 >10 0.054253915932548885 0.7495136974747783 >50 0.0012124723205921351 0.07402220904878717 >100 8.067900767831538E-4 0.1374190427508875 >500 2.712897326654174E-5 0.01610733056918208 >1k 2.712897126008245E-5 0.02910025065853301 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.790799837467007E-5 2 0.0 0.0 0.0 0.0 3.581599674934014E-5 3 0.0 0.0 0.0 0.0 3.581599674934014E-5 4 0.0 7.163199349868028E-5 0.0 0.0 3.581599674934014E-5 5 0.0 7.163199349868028E-5 0.0 0.0 3.581599674934014E-5 6 0.0 7.163199349868028E-5 0.0 0.0 3.581599674934014E-5 7 0.0 7.163199349868028E-5 0.0 0.0 3.581599674934014E-5 8 0.0 8.953999187335034E-5 0.0 0.0 3.581599674934014E-5 9 0.0 1.611719853720306E-4 0.0 0.0 3.581599674934014E-5 10-11 0.0 1.611719853720306E-4 0.0 1.790799837467007E-5 3.581599674934014E-5 12-13 0.0 1.611719853720306E-4 0.0 1.790799837467007E-5 5.3723995124010207E-5 14-15 0.0 2.59665976432716E-4 0.0 3.581599674934014E-5 7.163199349868028E-5 16-17 0.0 2.865279739947211E-4 0.0 5.37239951240102E-5 8.953999187335034E-5 18-19 0.0 3.0443597236939115E-4 0.0 5.37239951240102E-5 1.074479902480204E-4 20-21 0.0 3.223439707440612E-4 0.0 9.849399106068538E-5 1.074479902480204E-4 22-23 8.953999187335034E-6 3.671139666807364E-4 0.0 1.4326398699736055E-4 1.2535598862269048E-4 24-25 3.581599674934014E-5 4.1188396261741155E-4 0.0 1.4326398699736055E-4 1.4326398699736055E-4 26-27 3.581599674934014E-5 4.476999593667517E-4 0.0 1.5221798618469558E-4 1.4326398699736055E-4 28-29 3.581599674934014E-5 4.566539585540867E-4 0.0 3.492059683060663E-4 1.4326398699736055E-4 30-31 3.581599674934014E-5 5.551479496147721E-4 0.0 0.001343099878100255 1.4326398699736055E-4 32-33 3.581599674934014E-5 5.551479496147721E-4 0.0 0.003205531709065942 1.7907998374670067E-4 34-35 3.581599674934014E-5 6.536419406754574E-4 0.0 0.005730559479894422 2.148959804960408E-4 36-37 3.581599674934014E-5 7.521359317361428E-4 0.0 0.009607641128010491 2.148959804960408E-4 38-39 3.581599674934014E-5 7.521359317361428E-4 0.0 0.015714268573772984 2.2384997968337585E-4 40-41 3.581599674934014E-5 8.953999187335034E-4 0.0 0.021695540030912785 2.5071197724538095E-4 42-43 3.581599674934014E-5 9.222619162955085E-4 0.0 0.028187189441730688 2.5071197724538095E-4 44-45 3.581599674934014E-5 0.001056571904105534 0.0 0.03488478083385729 2.5071197724538095E-4 46-47 3.581599674934014E-5 0.0011282038976042142 0.0 0.042164382173160674 2.5071197724538095E-4 48-49 3.581599674934014E-5 0.0011282038976042142 0.0 0.04954247750352474 2.865279739947211E-4 50-51 3.581599674934014E-5 0.0012087898902902296 0.0 0.056589274863957414 2.865279739947211E-4 52-53 3.581599674934014E-5 0.0012177438894775646 0.0 0.06360025622764075 2.954819731820561E-4 54-55 3.581599674934014E-5 0.0012446058870395696 0.0 0.06998445764821062 3.0443597236939115E-4 56-57 3.581599674934014E-5 0.0012714678846015748 0.0 0.07591200511022642 3.0443597236939115E-4 58-59 3.581599674934014E-5 0.0013072838813509148 0.0 0.08140976061125013 3.0443597236939115E-4 60-61 3.581599674934014E-5 0.0013610078764749252 0.0 0.08697019410658519 3.0443597236939115E-4 62-63 3.581599674934014E-5 0.0013789158748495952 0.0 0.09273656958322896 3.402519691187313E-4 64-65 3.581599674934014E-5 0.0015400878602216258 0.0 0.09810001509644262 3.402519691187313E-4 66-67 3.581599674934014E-5 0.0015579958585962958 0.0 0.10362463259502835 3.5815996749340135E-4 68-69 3.581599674934014E-5 0.0015848578561583008 0.0 0.10858514814481196 3.5815996749340135E-4 70-71 3.581599674934014E-5 0.0016206738529076412 0.0 0.11281143576123409 3.671139666807364E-4 72-73 3.581599674934014E-5 0.0016296278520949762 0.0 0.11660793141666415 5.014239544907619E-4 74-75 3.581599674934014E-5 0.0016923058464063214 0.0 0.11948216515579868 5.014239544907619E-4 76-77 3.581599674934014E-5 0.0017728918390923368 0.0 0.12267874286567729 5.014239544907619E-4 78-79 3.581599674934014E-5 0.0017907998374670068 0.0 0.12477397867551371 5.014239544907619E-4 80-81 3.581599674934014E-5 0.0017907998374670068 0.0 0.12546343661293852 5.19331952865432E-4 82-83 3.581599674934014E-5 0.0018266158342163468 0.0 0.1259559065682419 5.551479496147721E-4 84-85 3.581599674934014E-5 0.0018266158342163468 0.0 0.12616184854955062 5.551479496147721E-4 86-87 3.581599674934014E-5 0.001844523832591017 0.0 0.12628720453817333 5.551479496147721E-4 88 3.581599674934014E-5 0.001880339829340357 0.0 0.126305112536548 5.551479496147721E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7230 0.0 46.658085 1 GTATCAA 12710 0.0 36.434982 1 TCAACGC 13970 0.0 32.28598 4 ATCAACG 14110 0.0 31.965635 3 CAACGCA 14465 0.0 31.150908 5 TATCAAC 14615 0.0 31.010427 2 AACGCAG 14885 0.0 30.243114 6 ACGCAGA 17460 0.0 25.758282 7 CGCAGAG 17615 0.0 25.531626 8 GCAGAGT 21210 0.0 21.224363 9 GTACATG 16395 0.0 21.020681 1 TACATGG 15985 0.0 20.727518 2 GTGGTAT 3895 0.0 20.6052 1 TGGTATC 3670 0.0 20.114304 2 GAGTACT 12385 0.0 20.079704 12-13 ACATGGG 16180 0.0 19.812979 3 CAGAGTA 20440 0.0 19.021605 10-11 GATCAAC 2245 0.0 18.161425 1 CATGGGG 11230 0.0 18.11366 4 GTACTTT 13705 0.0 18.004978 14-15 >>END_MODULE