##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140110_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7487874 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.51907230276578 33.0 31.0 34.0 31.0 34.0 2 32.68008916816709 34.0 31.0 34.0 31.0 34.0 3 32.85878501694874 34.0 31.0 34.0 31.0 34.0 4 36.2036869210139 37.0 35.0 37.0 35.0 37.0 5 36.01083244723402 37.0 35.0 37.0 35.0 37.0 6 36.11340575442375 37.0 35.0 37.0 35.0 37.0 7 36.14538452436566 37.0 35.0 37.0 35.0 37.0 8 36.22353354236463 37.0 36.0 37.0 35.0 37.0 9 38.003799476326655 39.0 38.0 39.0 35.0 39.0 10-11 37.968323452023895 39.0 38.0 39.0 35.0 39.0 12-13 37.97565230130742 39.0 38.0 39.0 35.0 39.0 14-15 39.1968933371475 40.0 39.0 41.0 36.0 41.0 16-17 39.26121085905025 40.0 39.0 41.0 36.5 41.0 18-19 39.33550751521727 40.0 39.0 41.0 36.5 41.0 20-21 39.3596323459866 40.0 39.0 41.0 37.0 41.0 22-23 39.3564601709394 40.0 39.0 41.0 37.0 41.0 24-25 39.29598406998831 40.0 39.0 41.0 36.5 41.0 26-27 39.12886987990859 40.0 39.0 41.0 36.0 41.0 28-29 39.0493385179018 40.0 39.0 41.0 36.0 41.0 30-31 39.12687925617411 40.0 39.0 41.0 36.0 41.0 32-33 39.07168045904146 40.0 39.0 41.0 36.0 41.0 34-35 38.95946103751318 40.0 38.0 41.0 35.0 41.0 36-37 38.846865218317454 40.0 38.0 41.0 35.0 41.0 38-39 38.7484005918453 40.0 38.0 41.0 35.0 41.0 40-41 38.83784976201103 40.0 38.0 41.0 35.0 41.0 42-43 38.81880440599757 40.0 38.0 41.0 35.0 41.0 44-45 38.78510006937967 40.0 38.0 41.0 35.0 41.0 46-47 38.70777789685586 40.0 38.0 41.0 35.0 41.0 48-49 38.659450577370464 40.0 38.0 41.0 35.0 41.0 50-51 38.54856426508937 40.0 38.0 41.0 34.0 41.0 52-53 38.5003027895318 40.0 38.0 41.0 34.0 41.0 54-55 38.394363335569 40.0 38.0 41.0 34.0 41.0 56-57 38.21975927933378 40.0 37.5 41.0 34.0 41.0 58-59 37.997240276301156 39.5 37.0 41.0 33.5 41.0 60-61 37.66069402518955 39.0 36.0 41.0 33.0 41.0 62-63 37.561842362129866 39.0 36.0 41.0 33.0 41.0 64-65 37.254729373271104 39.0 36.0 40.0 32.5 41.0 66-67 36.85596073263024 38.0 35.0 39.5 32.0 41.0 68-69 36.490516430658225 37.0 35.0 39.0 32.0 41.0 70-71 35.81025032013258 36.5 35.0 39.0 31.0 40.0 72-73 35.42961437186514 36.0 34.0 37.5 31.0 39.5 74-75 35.10634938559547 35.5 34.0 37.0 31.0 39.0 76-77 33.36135703648919 34.5 32.0 35.5 29.0 37.5 78-79 34.360104167972764 35.0 34.0 36.0 31.0 37.5 80-81 34.31280175485185 35.0 34.0 36.0 31.0 37.0 82-83 34.0406448591389 35.0 34.0 35.5 31.0 37.0 84-85 33.897006938542674 35.0 34.0 35.0 31.0 36.0 86-87 33.907833851423455 35.0 34.0 35.0 31.0 36.0 88-89 33.76032536835485 35.0 34.0 35.0 31.0 36.0 90-91 33.7721399681627 35.0 34.0 35.0 31.0 36.0 92-93 33.72372968157538 35.0 34.0 35.0 31.0 35.5 94-95 33.61159067253381 35.0 34.0 35.0 31.0 35.0 96-97 33.71952815637148 35.0 34.0 35.0 31.0 35.0 98-99 33.79330593355989 35.0 34.0 35.0 31.0 35.0 100-101 32.62217505621924 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 12.0 19 36.0 20 59.0 21 176.0 22 468.0 23 1434.0 24 3488.0 25 7478.0 26 13696.0 27 22524.0 28 33996.0 29 48444.0 30 65934.0 31 87532.0 32 117996.0 33 164087.0 34 246611.0 35 402365.0 36 785950.0 37 1755416.0 38 2516501.0 39 1183456.0 40 30212.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 54.15654697181069 15.871688011844217 10.67265554949242 19.299109466852673 2 12.3359464729293 25.174310211277014 33.11407890168007 29.375664414113622 3 31.047107819019732 24.48155971198118 29.61199512169324 14.859337347305846 4 11.240266596366338 15.945447265806024 46.26303807996769 26.55124805785995 5 10.941597040762172 41.357279783286955 34.35218060560314 13.348942570347738 6 24.597407370508083 36.07905989469329 17.40355899603651 21.919973738762117 7 21.27764169108615 34.416017149861226 26.695841837082195 17.61049932197043 8 21.150569574220935 24.05692189799134 19.88547082923671 34.90703769855102 9 19.244994804262735 23.99153884770153 29.247293188489277 27.516173159546458 10-11 26.562571782974224 21.621272226679817 23.89354057400738 27.92261541633858 12-13 33.31064769067859 21.475953908792768 25.902498835112723 19.310899565415916 14-15 26.93805344480957 22.902502098726554 32.07794361924359 18.081500837220286 16-17 17.766771983609768 29.82907431401757 31.149402353725502 21.25475134864716 18-19 17.994546916788398 33.561969659211684 24.891037162217206 23.552446261782716 20-21 22.227570326813915 26.861724870930637 22.555728806211455 28.35497599604399 22-23 21.855626091688904 23.643967532549755 27.415185516179623 27.085220859581717 24-25 28.268541059737718 23.88013007552829 24.256905479067086 23.594423385666904 26-27 23.175401107775766 22.97185372746814 35.147848380374924 18.704896784381177 28-29 19.554691049790573 32.20200805223332 26.406697541460616 21.836603356515493 30-31 19.339316774029438 26.57688526506115 26.29328942574094 27.790508535168467 32-33 24.313473619545768 24.64479872852845 26.486072608506127 24.555655043419655 34-35 27.933014478773405 24.237225102145654 25.08432849268915 22.74543192639179 36-37 23.82549844213732 22.349067485831682 33.594560428922776 20.23087364310822 38-39 22.33546798340932 28.67211481772201 28.79349796064253 20.198919238226143 40-41 20.20316128470177 30.21065615977149 28.74394496543105 20.842237590095696 42-43 19.874521743718105 27.840544851820454 21.97309360313597 30.311839801325473 44-45 22.273674317501598 24.821798455009464 24.813688029285018 28.09083919820392 46-47 29.370753438633514 24.995519923374385 25.975158169221736 19.658568468770373 48-49 23.53255384385531 25.52057804425133 29.430193581960268 21.516674529933088 50-51 18.28659141290398 28.224957544173506 32.560880358832755 20.927570684089762 52-53 20.358349718089237 29.755721052103855 25.58957730317874 24.29635192662817 54-55 20.420947020374374 25.048320009567593 27.088203734063317 27.442529235994716 56-57 25.227151559645854 23.574398909252995 23.462142863385687 27.73630666771546 58-59 27.739913339264294 24.273054649635004 27.094205721411456 20.892826289689246 60-61 25.730887912606203 24.900422550684723 30.509873679363313 18.85881585734576 62-63 19.565674481288138 30.019232457918232 29.32209330475676 21.09299975603687 64-65 19.82061972201719 30.431070671969213 24.62749544313607 25.12081416287753 66-67 21.82901052560831 27.397376571793487 23.552005411423753 27.221607491174453 68-69 23.366146369333123 24.540936696821042 27.09228055246793 25.000636381377905 70-71 26.30148277349631 24.1135931056689 25.537397129765576 24.047526991069212 72-73 22.02093133895538 25.21160093860566 32.52678404964268 20.24068367279628 74-75 21.02538924566209 29.604970311429273 26.160882167188166 23.20875827572047 76-77 19.697442213200407 26.708107039239863 26.751110279282464 26.843340468277262 78-79 23.928975878335088 24.25432376534768 26.56167454111511 25.25502581520212 80-81 26.013603475661096 24.955678593726596 25.17106106793292 23.859656862679383 82-83 22.621051127993397 24.118116717560206 31.744911097783802 21.515921056662595 84-85 22.591438873439664 26.826980584365383 28.050572682317465 22.531007859877494 86-87 19.97946603628724 29.07048005614786 29.108638796787044 21.841415110777856 88-89 21.047565716798992 25.323972768825563 24.326899340920527 29.30156217345492 90-91 20.571428658668122 25.73346489348498 26.24884562989715 27.446260817949746 92-93 25.568405783831043 24.24181854117836 27.99757908994775 22.19219658504284 94-95 21.942567632355207 22.831119596486282 31.393462729560795 23.83285004159772 96-97 19.35165923514984 26.059581930444953 32.14564855944261 22.443110274962596 98-99 20.22394802044595 25.68157414493993 29.926653049910552 24.16782478470357 100-101 31.071307428962808 15.314414215800731 39.57423116423418 14.040047191002285 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 711.0 1 748.5 2 1278.0 3 1921.5 4 2967.0 5 5011.0 6 6439.5 7 7097.5 8 7167.0 9 6436.5 10 5273.0 11 4296.5 12 4536.0 13 6015.5 14 9377.0 15 13699.5 16 16710.0 17 18064.5 18 17923.0 19 16633.5 20 14883.5 21 13203.0 22 12110.0 23 12253.0 24 13868.0 25 16340.0 26 19592.5 27 23811.5 28 28564.5 29 34124.0 30 39110.0 31 43574.5 32 49470.5 33 56011.0 34 63003.5 35 71161.5 36 79707.0 37 89101.5 38 99783.5 39 116407.0 40 142378.0 41 182517.0 42 252140.0 43 384398.5 44 584485.5 45 860614.0 46 1187784.5 47 1414968.5 48 1377205.5 49 1064970.5 50 697546.0 51 434293.0 52 280539.5 53 205585.5 54 158365.0 55 127332.5 56 110594.5 57 96430.5 58 82324.5 59 70214.0 60 56765.0 61 45320.0 62 36324.0 63 27926.5 64 20423.0 65 14819.5 66 10951.0 67 8646.5 68 6973.5 69 5199.5 70 3803.0 71 2730.5 72 2002.0 73 1437.0 74 973.5 75 617.5 76 381.5 77 227.5 78 139.5 79 106.5 80 82.5 81 55.5 82 37.0 83 26.5 84 22.0 85 19.5 86 15.5 87 12.5 88 8.0 89 4.0 90 2.5 91 2.0 92 1.5 93 0.5 94 0.0 95 0.5 96 1.0 97 1.0 98 0.5 99 0.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 9.882644926984614E-4 3 4.0064776731018714E-4 4 0.0 5 0.0 6 4.273576184641996E-4 7 0.0 8 0.0 9 6.677462788503118E-5 10-11 3.4722806500216217E-4 12-13 3.3387313942515593E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.041844679049576E-5 28-29 0.0 30-31 2.0624647705236387E-5 32-33 1.803541850980551E-4 34-35 2.8025413444911848E-5 36-37 6.154027237866026E-4 38-39 1.9393683075183063E-4 40-41 2.9211236014299194E-5 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 7.55956641045116E-4 56-57 1.1361935052906851E-4 58-59 0.0 60-61 7.683844908176681E-4 62-63 0.0 64-65 0.0 66-67 1.965217420355388E-5 68-69 0.0 70-71 0.0 72-73 1.0605223114804934E-4 74-75 0.0 76-77 1.1254445224502547E-5 78-79 8.196038948045426E-5 80-81 0.0 82-83 0.0 84-85 2.6522272343423114E-5 86-87 4.3109178583805076E-4 88-89 2.1845476748402732E-4 90-91 0.0 92-93 1.595222500039083E-5 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 4745.0 20-21 17868.0 22-23 14815.0 24-25 21505.0 26-27 96893.0 28-29 49675.0 30-31 56887.0 32-33 74034.0 34-35 58417.0 36-37 99233.0 38-39 122002.0 40-41 118657.0 42-43 137558.0 44-45 147496.0 46-47 119911.0 48-49 120815.0 50-51 169810.0 52-53 121976.0 54-55 172020.0 56-57 146205.0 58-59 121034.0 60-61 127869.0 62-63 107557.0 64-65 136900.0 66-67 134283.0 68-69 133554.0 70-71 114840.0 72-73 134902.0 74-75 133614.0 76-77 157973.0 78-79 176757.0 80-81 133184.0 82-83 174400.0 84-85 201712.0 86-87 158199.0 88-89 158635.0 90-91 145738.0 92-93 127223.0 94-95 176423.0 96-97 119586.0 98-99 772787.0 100-101 1970182.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.3431962193684 #Duplication Level Percentage of deduplicated Percentage of total 1 89.25299489522173 76.17135856509194 2 7.563468836751837 12.9098121006798 3 1.854718249420451 4.748627504757989 4 0.6805108870033468 2.3230789663577225 5 0.2858109361020028 1.2196009400697292 6 0.14870581277662837 0.7614617615253871 7 0.07535080409544596 0.4501474921443382 8 0.04721783439270313 0.3223776724504083 9 0.027797697963760772 0.21351099525911751 >10 0.06227261786786392 0.7408632951008614 >50 6.042513904752361E-4 0.03595177122615901 >100 5.471770137927583E-4 0.10320893533659402 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 4.006477673101871E-5 2.6709851154012473E-5 0.0 0.0 0.0 3 4.006477673101871E-5 2.6709851154012473E-5 0.0 0.0 0.0 4 4.006477673101871E-5 2.6709851154012473E-5 0.0 0.0 0.0 5 9.348447903904366E-5 2.6709851154012473E-5 0.0 0.0 0.0 6 1.7361403250108109E-4 2.6709851154012473E-5 0.0 0.0 0.0 7 2.537435859631185E-4 2.6709851154012473E-5 0.0 0.0 0.0 8 3.0716328827114345E-4 2.6709851154012473E-5 0.0 1.3354925577006236E-5 0.0 9 3.205182138481497E-4 2.6709851154012473E-5 0.0 4.006477673101871E-5 0.0 10-11 3.4722806500216217E-4 2.6709851154012473E-5 0.0 6.677462788503118E-5 0.0 12-13 4.273576184641996E-4 2.6709851154012473E-5 0.0 1.3354925577006236E-4 0.0 14-15 5.07487171926237E-4 2.6709851154012473E-5 0.0 2.537435859631185E-4 0.0 16-17 5.141646347147401E-4 4.006477673101871E-5 0.0 4.807773207722245E-4 0.0 18-19 6.410364276962994E-4 4.674223951952183E-5 0.0 6.877786672158212E-4 0.0 20-21 7.478758323123493E-4 5.3419702308024946E-5 0.0 0.001128491211257027 0.0 22-23 8.012955346203743E-4 5.3419702308024946E-5 0.0 0.0018429797296268607 0.0 24-25 0.001014974343852474 5.3419702308024946E-5 0.0 0.002537435859631185 0.0 26-27 0.001014974343852474 5.3419702308024946E-5 0.0 0.0031717948245389813 0.0 28-29 0.0012286531530845738 5.3419702308024946E-5 0.0 0.0044338352915660705 0.0 30-31 0.0013755573344316424 5.3419702308024946E-5 0.0 0.006704172639657131 0.0 32-33 0.0014222995739511643 5.3419702308024946E-5 0.0 0.011912593614689562 0.0 34-35 0.0016226234576062577 6.677462788503118E-5 0.0 0.01732801593616559 0.0 36-37 0.0018162698784728482 8.012955346203742E-5 0.0 0.022442952432158984 0.0 38-39 0.0019431416714544075 8.680701625054054E-5 0.0 0.029928388218070978 0.0 40-41 0.0019631740598199166 9.348447903904366E-5 0.0 0.03762082535042657 0.0 42-43 0.0020900458528014757 1.2019433019305613E-4 0.0 0.047029370419427466 0.0 44-45 0.0022970471992450727 1.469041813470686E-4 0.0 0.056250946530350274 0.0 46-47 0.002704372429343763 1.469041813470686E-4 0.0 0.06618033369685442 0.0 48-49 0.0027911794455943036 1.469041813470686E-4 0.0 0.07434687068719373 0.0 50-51 0.0027911794455943036 1.469041813470686E-4 0.0 0.0826603118588801 0.0 52-53 0.002797856908382807 1.6025910692407484E-4 0.0 0.09011903779363808 0.0 54-55 0.002817889296748316 1.6025910692407484E-4 0.0 0.0989065788233082 0.0 56-57 0.0030048582548264035 1.6025910692407484E-4 0.0 0.10896283778279389 0.0 58-59 0.0030182131804034097 1.6025910692407484E-4 0.0 0.11675543685697704 0.0 60-61 0.0030248906431919126 1.7361403250108109E-4 0.0 0.12367328830586626 0.0 62-63 0.003044923031557422 1.7361403250108109E-4 0.0 0.13026394407811884 0.0 64-65 0.003098342733865447 1.7361403250108109E-4 0.0 0.13624027327382915 0.0 66-67 0.003392151096559584 1.7361403250108109E-4 0.0 0.14368564428301012 0.0 68-69 0.0034589257244446153 1.8696895807808733E-4 0.0 0.15104420827594053 0.0 70-71 0.003565765129060665 2.070013464435967E-4 0.0 0.1573877979250185 0.0 72-73 0.003659249608099709 2.2703373480910602E-4 0.0 0.161641341721295 0.0 74-75 0.0037059918476192305 2.2703373480910602E-4 0.0 0.16538072088285674 0.0 76-77 0.003712669310407734 2.3371119759760915E-4 0.0 0.16894648601191742 0.0 78-79 0.003712669310407734 2.4038866038611227E-4 0.0 0.1732400945849249 0.0 80-81 0.003966412896370852 2.4038866038611227E-4 0.0 0.17498958983551272 0.0 82-83 0.004033187524255883 2.4038866038611227E-4 0.0 0.17553714178416996 0.0 84-85 0.004193446631179958 2.4038866038611227E-4 0.0 0.1759912092537882 0.0 86-87 0.00434702827531553 2.4038866038611227E-4 0.0 0.17610472612119274 0.0 88-89 0.00436706066368104 2.4038866038611227E-4 0.0 0.17615146836071227 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTCGT 105 0.0019237533 36.675747 94-95 GAGTTGC 1090 0.0 31.013376 94-95 CCCGGTT 585 3.6379788E-12 23.039892 94-95 GTTTACG 210 0.0020333237 22.922342 94-95 CGGGGGC 575 0.0 22.129782 90-91 GAGTACG 4950 0.0 22.115192 1 AGTACGC 4975 0.0 21.716425 2 GTCGGGG 565 0.0 21.322676 88-89 TCGGGGG 585 0.0 20.945885 90-91 GTACGCA 5035 0.0 20.888947 3 TACATGG 10240 0.0 20.402687 2 GTACATG 10735 0.0 20.228382 1 ACATGGG 10280 0.0 19.870632 3 GCTCGAG 700 0.0 18.851297 90-91 GTACTAG 880 0.0 18.700346 1 CCCGCAG 780 1.2732926E-11 18.5142 94-95 GGTCGGG 660 0.0 18.253502 88-89 CGCATCG 320 0.001089734 18.051344 94-95 ATCGATC 380 0.008812116 17.791885 94-95 TCGAGTT 715 0.0 17.659363 92-93 >>END_MODULE