##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140109_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3948187 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.814449518221906 34.0 31.0 34.0 31.0 34.0 2 33.00648905434317 34.0 33.0 34.0 31.0 34.0 3 33.1124009577054 34.0 33.0 34.0 31.0 34.0 4 36.323852441639666 37.0 37.0 37.0 35.0 37.0 5 36.194689866513414 37.0 35.0 37.0 35.0 37.0 6 36.4004078327597 37.0 37.0 37.0 35.0 37.0 7 36.40745562456895 37.0 37.0 37.0 35.0 37.0 8 36.40965840777045 37.0 37.0 37.0 35.0 37.0 9 38.22463956241181 39.0 38.0 39.0 37.0 39.0 10-11 38.13749513384244 39.0 38.0 39.0 37.0 39.0 12-13 38.11631161340635 39.0 38.0 39.0 37.0 39.0 14-15 39.56108309966068 41.0 39.0 41.0 37.0 41.0 16-17 39.53593902720414 41.0 39.0 41.0 37.0 41.0 18-19 39.575319887330565 41.0 39.0 41.0 37.0 41.0 20-21 39.59050769853229 41.0 39.0 41.0 37.0 41.0 22-23 39.54185848079568 41.0 39.0 41.0 37.0 41.0 24-25 39.5226726327753 41.0 39.0 41.0 37.0 41.0 26-27 39.407943594857855 41.0 39.0 41.0 37.0 41.0 28-29 39.34465838176353 40.0 39.0 41.0 37.0 41.0 30-31 39.290444349194374 40.0 39.0 41.0 36.5 41.0 32-33 39.20748548745873 40.0 39.0 41.0 36.0 41.0 34-35 39.17198582328993 40.0 38.0 41.0 36.0 41.0 36-37 39.13409522685304 40.0 38.0 41.0 36.0 41.0 38-39 39.07898987149186 40.0 38.0 41.0 35.0 41.0 40-41 39.01270840324924 40.0 38.0 41.0 35.0 41.0 42-43 39.00389675432265 40.0 38.0 41.0 35.0 41.0 44-45 38.94225634936323 40.0 38.0 41.0 35.0 41.0 46-47 38.83034214108748 40.0 38.0 41.0 35.0 41.0 48-49 38.815249442526266 40.0 38.0 41.0 35.0 41.0 50-51 38.71204194487386 40.0 38.0 41.0 35.0 41.0 52-53 38.54890692179151 40.0 38.0 41.0 35.0 41.0 54-55 38.3504329634186 40.0 37.5 41.0 34.5 41.0 56-57 38.200897633583025 40.0 37.0 41.0 34.0 41.0 58-59 38.0354720921853 39.0 37.0 41.0 34.0 41.0 60-61 37.80257007531447 39.0 36.0 41.0 34.0 41.0 62-63 37.63720433578598 39.0 36.0 41.0 34.0 41.0 64-65 37.35908045060364 38.5 35.0 40.0 33.5 41.0 66-67 37.115258384438135 38.0 35.0 40.0 33.0 41.0 68-69 36.84668120235507 37.5 35.0 40.0 33.0 41.0 70-71 36.42164088603646 37.0 35.0 39.0 33.0 41.0 72-73 36.161628524056475 36.5 35.0 39.0 33.0 41.0 74-75 35.82326560587906 36.0 35.0 38.5 32.5 40.0 76-77 34.145403400140076 34.5 33.0 36.5 30.0 39.0 78-79 35.09934392159043 35.0 34.0 37.0 32.0 39.0 80-81 35.036735478010684 35.0 34.0 37.0 32.0 39.0 82-83 34.80027206467413 35.0 34.0 36.5 32.0 38.0 84-85 34.58635217546733 35.0 34.0 36.0 32.0 37.5 86-87 34.42423627766824 35.0 34.0 36.0 32.0 37.0 88-89 34.28219748198821 35.0 34.0 35.5 31.5 37.0 90-91 34.227976028298016 35.0 34.0 35.0 32.0 36.5 92-93 34.12427928365884 35.0 34.0 35.0 31.5 36.0 94-95 33.98768925358297 35.0 34.0 35.0 31.0 36.0 96-97 34.013652468163016 35.0 34.0 35.0 31.0 36.0 98-99 34.029210381905926 35.0 34.0 35.0 31.0 36.0 100-101 32.72032876818463 34.0 31.5 35.0 28.5 35.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 1.0 17 2.0 18 6.0 19 15.0 20 47.0 21 105.0 22 271.0 23 777.0 24 1773.0 25 3579.0 26 6216.0 27 9910.0 28 14955.0 29 21298.0 30 29439.0 31 39777.0 32 54620.0 33 78193.0 34 125200.0 35 212251.0 36 447406.0 37 1069646.0 38 1209499.0 39 608281.0 40 14919.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.1401298874648 19.62006865429626 12.676780507103642 24.563020951135293 2 15.484337501978787 20.90853253126484 40.039943010922904 23.567186955833467 3 18.50643602461598 26.130910875857076 29.805198209700855 25.557454889826086 4 12.57726647699311 17.288137567952074 38.63656913920238 31.49802681585244 5 13.271610488560952 37.910767651076306 35.5158202992918 13.301801561070942 6 30.640120967741936 37.54141169557465 18.584302561193063 13.234164775490356 7 27.11533166995383 32.030372421569695 23.307229368821687 17.547066539654782 8 25.361792640520825 35.6183736991181 21.141247868958587 17.878585791402486 9 26.23673915989246 15.902015736344675 20.87789705902839 36.983348044734484 10-11 24.769140055412972 26.155604123730143 28.80867935624908 20.26657646460781 12-13 25.495723586230373 23.649462231597035 28.777980065691228 22.076834116481365 14-15 22.678155821900027 24.89966913927836 26.150711706411066 26.271463332410548 16-17 22.40416930606377 27.937493842110317 26.839825469259686 22.818511382566225 18-19 22.375700543059384 27.344512810563433 28.32535540996412 21.95443123641307 20-21 23.238873410887557 26.687552786781104 27.962515417317775 22.111058385013564 22-23 23.072404464844688 26.587308874911674 27.799333523229354 22.540953137014284 24-25 22.716713457224547 26.771562977751696 27.890128178218504 22.62159538680525 26-27 22.706543436353854 26.92055739998941 27.840996202079673 22.531902961577067 28-29 22.57739080683644 27.09554452532827 27.78828557400464 22.538779093830648 30-31 22.877558584535464 27.005333970002752 27.55660870865678 22.560498736805005 32-33 22.672641083371776 27.10608516833457 27.59519782158711 22.626075926706545 34-35 22.738438560642127 27.2044005676136 27.651879022805193 22.40528184893908 36-37 22.798829131122833 26.982528449026518 27.59717276242953 22.621469657421127 38-39 22.65041427926231 27.109067523045 27.683007161692746 22.55751103599994 40-41 22.83538171467142 26.944367057594793 27.738336413980015 22.48191481375377 42-43 22.749852512078064 27.00813442394672 27.450930369756204 22.791082694219007 44-45 22.770261094745166 27.323883063328818 27.21336250072269 22.692493341203328 46-47 22.8920846797034 27.198633449147962 27.034929205513087 22.87435266563555 48-49 22.914703601707966 27.116871184540674 26.995544446829356 22.972880766922 50-51 22.68769887319471 27.236133873617902 26.99578978145895 23.08037747172844 52-53 22.863426495405406 27.262737653026935 26.792477881993705 23.081357969573958 54-55 22.959489361117143 27.142082227592528 26.82752963805402 23.07089877323631 56-57 22.94603488142138 27.139913089319194 26.95411294676851 22.959939082490912 58-59 22.915765029035732 27.18868664629571 27.008420310310694 22.887128014357867 60-61 23.037126364244152 27.34186133766071 26.68428978076584 22.936722517329297 62-63 23.01018684776618 27.24209635666593 26.68630493167336 23.06141186389453 64-65 22.863450992150977 27.241671881503454 26.75613155755876 23.13874556878681 66-67 22.9234457002882 27.177579533625142 26.66426755547044 23.23470721061622 68-69 22.963496190624483 27.223032931126085 26.742058682457625 23.071412195791808 70-71 22.969322805926005 26.972433373368194 26.743995127919867 23.314248692785934 72-73 23.032759919771625 27.124847610144382 26.675934671180396 23.166457798903597 74-75 22.804523927900775 27.23932362884171 26.83190369399177 23.124248749265746 76-77 22.99605454510959 27.093239933645748 26.670367678780742 23.24033784246392 78-79 22.966198041526827 27.150642022738136 26.57761669003357 23.305543245701475 80-81 22.888850575940246 27.24589742064007 26.64735083760413 23.21790116581556 82-83 23.237881845923827 27.04818720918777 26.81602743209417 22.897903512794233 84-85 23.24889179519856 26.99681159708163 26.616517143306677 23.13777946441313 86-87 22.877032006166544 27.221302479420572 26.83086062320595 23.070804891206937 88-89 23.187394462918096 26.95870556698594 26.700098307288165 23.153801662807794 90-91 23.158593786349044 27.05455700693249 26.688176819196947 23.098672387521518 92-93 23.246372006271717 27.049647765179497 26.653059363276416 23.050920865272374 94-95 23.000123598799423 27.072319551848384 26.762778643552878 23.164778205799315 96-97 22.980713939639084 27.080636995540146 26.803989634604335 23.134659430216438 98-99 23.38389089413135 27.657572588882346 26.829587397254933 22.128949119731367 100-101 27.951870111741854 34.87078047800166 27.15015661805874 10.027192792197742 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 502.0 1 527.5 2 969.5 3 1480.0 4 2146.0 5 3664.5 6 4799.0 7 5284.5 8 5352.5 9 4916.5 10 4253.5 11 3648.0 12 3990.5 13 5526.5 14 8849.5 15 13093.5 16 16248.5 17 17944.0 18 18071.5 19 17036.5 20 15584.5 21 14441.0 22 14478.0 23 16250.5 24 20038.5 25 25362.5 26 32062.5 27 39970.0 28 47484.0 29 55043.0 30 62394.0 31 68722.0 32 76463.5 33 84701.0 34 91616.0 35 99908.0 36 110634.0 37 119378.0 38 123874.0 39 127510.0 40 132786.5 41 137742.0 42 141670.0 43 147860.5 44 155288.5 45 163337.0 46 169112.5 47 172852.0 48 177727.5 49 181411.0 50 183864.5 51 183328.5 52 178221.0 53 173024.0 54 166906.5 55 157524.5 56 147316.5 57 135959.0 58 123317.5 59 107569.0 60 88689.5 61 70355.0 62 55102.0 63 42691.0 64 32616.0 65 24557.5 66 18244.0 67 13765.5 68 10345.0 69 7597.0 70 5496.5 71 3932.0 72 2780.0 73 1948.5 74 1363.0 75 931.0 76 627.5 77 408.5 78 273.0 79 184.5 80 130.5 81 86.5 82 57.0 83 33.0 84 16.5 85 13.0 86 11.5 87 8.5 88 4.5 89 3.0 90 3.0 91 2.5 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0015703410198149176 3 5.065616192951347E-4 4 0.0 5 0.0 6 6.838581860484318E-4 7 0.0 8 0.0 9 5.065616192951347E-5 10-11 3.545931335065943E-4 12-13 4.8123353833037796E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 8.869493137609806E-5 28-29 0.0 30-31 3.811883062609163E-5 32-33 2.677616844505052E-4 34-35 2.5609703004274262E-5 36-37 7.73082902575835E-4 38-39 2.6015962353861835E-4 40-41 3.9442078650134304E-5 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 7.446331994139164E-4 56-57 5.799454851243983E-5 58-59 0.0 60-61 8.330965454759138E-4 62-63 0.0 64-65 0.0 66-67 3.0889834186459074E-5 68-69 0.0 70-71 0.0 72-73 8.039553315986121E-5 74-75 0.0 76-77 1.6497822452414504E-5 78-79 3.343301386416936E-5 80-81 0.0 82-83 0.0 84-85 1.7423915857819453E-5 86-87 4.2381568679596935E-4 88-89 1.0743954376872133E-4 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 58.0 20-21 247.0 22-23 515.0 24-25 911.0 26-27 2172.0 28-29 5996.0 30-31 13307.0 32-33 15521.0 34-35 21131.0 36-37 34001.0 38-39 41473.0 40-41 39724.0 42-43 42379.0 44-45 49465.0 46-47 49452.0 48-49 46861.0 50-51 42731.0 52-53 40129.0 54-55 42676.0 56-57 43810.0 58-59 43410.0 60-61 43218.0 62-63 40738.0 64-65 40348.0 66-67 42248.0 68-69 42844.0 70-71 43198.0 72-73 39596.0 74-75 39642.0 76-77 39262.0 78-79 41261.0 80-81 41944.0 82-83 38729.0 84-85 38240.0 86-87 38627.0 88-89 40704.0 90-91 42740.0 92-93 42363.0 94-95 44806.0 96-97 70490.0 98-99 330520.0 100-101 2230700.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.2661615920207 #Duplication Level Percentage of deduplicated Percentage of total 1 89.4410739483272 75.36855990293611 2 7.152073057126583 12.053554878995323 3 1.8939220744188208 4.787806306970142 4 0.683651885575053 2.3043488105022822 5 0.3220512874221144 1.35690129134151 6 0.16837292315772598 0.851288397031789 7 0.09988872204719382 0.5892067435274493 8 0.0606926064686381 0.4091466387301743 9 0.03913990748877902 0.29683527922315744 >10 0.13665220808965198 1.7182601393659105 >50 0.0014554436765107342 0.08458180318786995 >100 0.0010259362017346508 0.17950980818831477 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 2.5328080964756735E-5 0.0 2 0.0 0.0 0.0 2.5328080964756735E-5 0.0 3 0.0 0.0 0.0 2.5328080964756735E-5 0.0 4 0.0 0.0 0.0 2.5328080964756735E-5 0.0 5 0.0 0.0 0.0 5.065616192951347E-5 0.0 6 0.0 0.0 0.0 5.065616192951347E-5 0.0 7 0.0 0.0 0.0 5.065616192951347E-5 0.0 8 0.0 0.0 0.0 5.065616192951347E-5 0.0 9 0.0 0.0 0.0 5.065616192951347E-5 0.0 10-11 0.0 0.0 0.0 7.59842428942702E-5 0.0 12-13 0.0 0.0 0.0 8.864828337664857E-5 0.0 14-15 0.0 0.0 0.0 1.0131232385902694E-4 0.0 16-17 0.0 0.0 0.0 1.0131232385902694E-4 0.0 18-19 0.0 0.0 0.0 1.0131232385902694E-4 0.0 20-21 0.0 0.0 0.0 1.3930444530616204E-4 0.0 22-23 0.0 0.0 0.0 1.899606072356755E-4 0.0 24-25 0.0 0.0 0.0 2.5328080964756735E-4 0.0 26-27 0.0 0.0 0.0 4.305773764008645E-4 0.0 28-29 0.0 0.0 0.0 0.0012917321292025936 0.0 30-31 0.0 0.0 0.0 0.00419179739966724 0.0 32-33 0.0 0.0 0.0 0.009194093390206695 0.0 34-35 0.0 0.0 0.0 0.015171520497889284 2.5328080964756735E-5 36-37 0.0 0.0 0.0 0.023023225596963872 2.5328080964756735E-5 38-39 0.0 0.0 0.0 0.0350667280957057 2.5328080964756735E-5 40-41 0.0 0.0 0.0 0.047338183323130334 2.5328080964756735E-5 42-43 0.0 0.0 0.0 0.05811528177363433 2.5328080964756735E-5 44-45 0.0 0.0 0.0 0.06995615962465809 2.5328080964756735E-5 46-47 0.0 0.0 0.0 0.08210097444725895 2.5328080964756735E-5 48-49 0.0 0.0 0.0 0.09313135370741052 2.5328080964756735E-5 50-51 0.0 0.0 0.0 0.10503555176084617 2.5328080964756735E-5 52-53 0.0 0.0 0.0 0.11582531425183254 2.5328080964756735E-5 54-55 0.0 0.0 0.0 0.12607052300207666 2.5328080964756735E-5 56-57 0.0 0.0 0.0 0.135821834173508 2.5328080964756735E-5 58-59 0.0 0.0 0.0 0.1451805600899856 2.5328080964756735E-5 60-61 0.0 0.0 0.0 0.15474191065418127 2.5328080964756735E-5 62-63 0.0 0.0 0.0 0.16420194889451792 2.5328080964756735E-5 64-65 0.0 0.0 0.0 0.17296546490832373 2.5328080964756735E-5 66-67 0.0 0.0 0.0 0.1820582459746714 2.5328080964756735E-5 68-69 0.0 0.0 0.0 0.19159426845790234 2.5328080964756735E-5 70-71 0.0 0.0 0.0 0.1995599499213183 2.5328080964756735E-5 72-73 0.0 0.0 0.0 0.20482819076198772 2.5328080964756735E-5 74-75 0.0 0.0 0.0 0.20912130048551397 2.5328080964756735E-5 76-77 0.0 0.0 0.0 0.2132244496018046 2.5328080964756735E-5 78-79 0.0 0.0 0.0 0.21658042032963484 2.5328080964756735E-5 80-81 0.0 0.0 0.0 0.21798612882317883 2.5328080964756735E-5 82-83 0.0 0.0 0.0 0.2184800264019916 2.5328080964756735E-5 84-85 0.0 0.0 0.0 0.21892326781887483 2.5328080964756735E-5 86-87 0.0 0.0 0.0 0.21907523630466338 2.5328080964756735E-5 88-89 0.0 0.0 0.0 0.21911322842611053 2.5328080964756735E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4245 0.0 43.708645 1 GTATCAA 7635 0.0 33.3142 1 ATCAACG 9015 0.0 27.214285 3 CAACGCA 9005 0.0 27.199022 5 TCAACGC 9115 0.0 26.960655 4 TATCAAC 9460 0.0 26.497637 2 AACGCAG 9425 0.0 26.204254 6 ACGCAGA 10410 0.0 23.685448 7 GTACATG 12030 0.0 23.424463 1 TACATGG 11880 0.0 23.375456 2 ACATGGG 11830 0.0 22.850464 3 CGCAGAG 11205 0.0 21.968401 8 TAACGCC 265 9.094947E-12 21.638042 4 CATGGGG 8575 0.0 20.395277 4 TATACCG 255 3.1159288E-9 19.274223 5 GTACTAG 1040 0.0 18.904043 1 GCAGAGT 13405 0.0 18.362995 9 GAGTACT 6925 0.0 17.979998 12-13 AGAGTAC 11925 0.0 16.846764 10-11 CAGAGTA 12935 0.0 16.449585 10-11 >>END_MODULE