##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140108_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7081441 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.79618103151604 34.0 31.0 34.0 31.0 34.0 2 32.98528604559439 34.0 33.0 34.0 31.0 34.0 3 33.0915742996376 34.0 33.0 34.0 31.0 34.0 4 36.46119102030222 37.0 37.0 37.0 35.0 37.0 5 36.33197424083601 37.0 37.0 37.0 35.0 37.0 6 36.363734725742965 37.0 37.0 37.0 35.0 37.0 7 36.365461069293666 37.0 37.0 37.0 35.0 37.0 8 36.37728140360133 37.0 37.0 37.0 35.0 37.0 9 38.27697385320304 39.0 39.0 39.0 37.0 39.0 10-11 38.18638261619351 39.0 38.5 39.0 37.0 39.0 12-13 38.167816620939156 39.0 39.0 39.0 37.0 39.0 14-15 39.67303547399463 41.0 40.0 41.0 37.5 41.0 16-17 39.65105852043391 41.0 40.0 41.0 37.0 41.0 18-19 39.6882611886479 41.0 40.0 41.0 37.5 41.0 20-21 39.7039205674259 41.0 40.0 41.0 37.5 41.0 22-23 39.65320527971007 41.0 40.0 41.0 37.0 41.0 24-25 39.62615276409974 41.0 40.0 41.0 37.0 41.0 26-27 39.50453885380318 41.0 39.0 41.0 37.0 41.0 28-29 39.44125417303705 41.0 39.0 41.0 37.0 41.0 30-31 39.36895427086077 40.0 39.0 41.0 36.0 41.0 32-33 39.27855292028801 40.0 39.0 41.0 36.0 41.0 34-35 39.2414185550733 40.0 39.0 41.0 35.5 41.0 36-37 39.199486440218934 40.0 39.0 41.0 35.0 41.0 38-39 39.13381128934557 40.0 39.0 41.0 35.0 41.0 40-41 39.05958666659933 40.0 39.0 41.0 35.0 41.0 42-43 39.04354018782104 40.0 39.0 41.0 35.0 41.0 44-45 38.97606878175124 40.0 38.0 41.0 35.0 41.0 46-47 38.85103737849302 40.0 38.0 41.0 35.0 41.0 48-49 38.82724096368352 40.0 38.0 41.0 35.0 41.0 50-51 38.70392831096977 40.0 38.0 41.0 35.0 41.0 52-53 38.51961006583994 40.0 38.0 41.0 35.0 41.0 54-55 38.29470216284555 40.0 37.0 41.0 34.0 41.0 56-57 38.1180768696117 40.0 37.0 41.0 34.0 41.0 58-59 37.92541568700163 39.0 36.0 41.0 34.0 41.0 60-61 37.66610961049639 39.0 36.0 41.0 34.0 41.0 62-63 37.4661446652611 39.0 35.0 40.5 33.5 41.0 64-65 37.16542902528778 38.0 35.0 40.0 33.0 41.0 66-67 36.90029302226888 37.0 35.0 40.0 33.0 41.0 68-69 36.618461598076635 37.0 35.0 39.5 33.0 41.0 70-71 36.1645176491437 36.0 35.0 39.0 32.5 41.0 72-73 35.90789455652822 36.0 35.0 39.0 32.0 40.5 74-75 35.55897575330523 35.0 35.0 38.5 32.0 40.0 76-77 33.81754925264184 34.5 32.0 36.0 29.0 39.0 78-79 34.84506199476542 35.0 34.0 37.0 31.5 39.0 80-81 34.80164162749717 35.0 34.0 36.0 32.0 39.0 82-83 34.57108615982398 35.0 34.0 36.0 32.0 37.0 84-85 34.3629821716764 35.0 34.0 35.5 31.0 37.0 86-87 34.209280364856845 35.0 34.0 35.0 31.0 37.0 88-89 34.0716281293777 35.0 34.0 35.0 31.0 36.0 90-91 34.03359965024389 35.0 34.0 35.0 31.0 36.0 92-93 33.93231994746502 35.0 34.0 35.0 31.0 36.0 94-95 33.79515670215696 35.0 34.0 35.0 31.0 36.0 96-97 33.832140042576654 35.0 34.0 35.0 31.0 35.0 98-99 33.87055626121746 35.0 34.0 35.0 31.0 35.0 100-101 32.62111594944853 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 9.0 20 24.0 21 81.0 22 301.0 23 967.0 24 2610.0 25 5817.0 26 10984.0 27 18365.0 28 27963.0 29 39142.0 30 53485.0 31 72011.0 32 98435.0 33 141568.0 34 233245.0 35 406652.0 36 868112.0 37 1859242.0 38 2159821.0 39 1056509.0 40 26097.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.64490221693579 19.46870700469015 12.539128688638371 24.34726208973569 2 15.86829049027786 20.678614454300906 39.55829647928187 23.89479857613936 3 18.476334515301332 26.328386578379163 29.6440115739662 25.5512673323533 4 12.801815336737254 17.078953280836483 38.0221765598273 32.097054822598956 5 13.462643191215346 37.85208940554464 35.115739171693896 13.569528231546126 6 31.098450716178906 37.020936958661146 18.2951367956708 13.58547552948915 7 27.447464435557677 31.86242743532001 23.140459688924896 17.549648440197412 8 26.000654386586007 34.978883535144895 20.819858557036625 18.200603521232473 9 26.777223276621704 15.416596059558508 20.648808716871144 37.15737194694864 10-11 25.20032360754917 25.878831877857216 28.266235415877922 20.654609098715696 12-13 25.883949831188318 23.45144043669825 28.3970293210612 22.267580411052233 14-15 23.072366203432324 24.553371270056477 25.90673282457624 26.46752970193496 16-17 22.668790151608974 27.637256315487203 26.519630679687932 23.17432285321589 18-19 22.70147417736023 26.9913920062315 28.196662233011615 22.110471583396656 20-21 23.472285319238264 26.230302374708863 27.874454880616366 22.42295742543651 22-23 23.482680761442737 26.10789635820221 27.609272470169525 22.800150410185523 24-25 23.069199164591815 26.359358723713484 27.713630514731197 22.857811596963508 26-27 22.9899739252539 26.59938485415296 27.679620298343476 22.731020922249666 28-29 22.797381006976387 26.671709446508245 27.70811666243489 22.822792884080478 30-31 23.092739165539175 26.585161322550512 27.50164473859019 22.820454773320126 32-33 22.90051214121695 26.785923378805414 27.427036565945865 22.886527914031767 34-35 22.891173932680406 26.79293570772649 27.579545183566246 22.73634517602686 36-37 23.04355399633156 26.682017073646396 27.449666719462872 22.824762210559168 38-39 23.0132517303919 26.733382271513527 27.464330489593003 22.78903550850157 40-41 22.93785959517715 26.549540709061397 27.68124043670264 22.831359259058807 42-43 23.03291630484953 26.729572270709586 27.197955842963122 23.039555581477767 44-45 23.026092829573333 27.100881946569018 26.879945836081333 22.993079387776323 46-47 23.15530887664982 26.930644765890747 26.78051741745408 23.133528940005352 48-49 23.288126326003333 26.79907896915394 26.609474450250087 23.30332025459264 50-51 22.932515581534425 26.872688418854114 26.70688068545098 23.48791531416048 52-53 23.05427181538141 26.99960053619726 26.474802991715467 23.47132465670586 54-55 23.205672454426047 26.8615195826031 26.450208840546598 23.482599122424258 56-57 23.388226126830165 26.79017666401002 26.52138474177812 23.3002124673817 58-59 23.19604564318239 26.798541296982233 26.73228348067521 23.27312957916017 60-61 23.318929506578712 26.96269202730532 26.313168583796497 23.40520988231947 62-63 23.298505879825008 26.94503942848617 26.32335632632124 23.433098365367588 64-65 23.133549109477062 26.87263171229167 26.406460021475592 23.58735915675567 66-67 23.169360473894404 26.884112587904124 26.243271295624254 23.70325564257722 68-69 23.158271648874525 26.992952700830212 26.368095783337765 23.480679866957495 70-71 23.20523843677568 26.62334482310641 26.330112518775344 23.84130422134257 72-73 23.254932178061328 26.837613515532947 26.333196827312698 23.574257479093024 74-75 23.050322361288362 27.016918336566064 26.45832500996302 23.47443429218256 76-77 23.28600183799454 26.85437490292607 26.18396067532834 23.675662583751052 78-79 23.2420729297106 26.789959557056775 26.299732995593438 23.66823451763919 80-81 23.134007307277805 26.98722716077169 26.26575066025675 23.613014871693757 82-83 23.435197237103374 26.762807273363116 26.46501095456777 23.336984534965744 84-85 23.519128841597755 26.757931438162192 26.1590539733714 23.56388574686865 86-87 23.129843602582778 27.04600744161139 26.42771164508409 23.396437310721733 88-89 23.35743660709065 26.66061723857941 26.392371451495034 23.589574702834906 90-91 23.438733342619678 26.569996841622416 26.38536186384076 23.605907951917146 92-93 23.438012951433578 26.733270027387846 26.34286145917161 23.485855562006968 94-95 23.234954540265047 26.767767789103463 26.46141077016808 23.53586690046341 96-97 23.17493905754888 26.653419858405115 26.547380154757107 23.624260929288905 98-99 23.526947492638037 27.282286957101327 26.537680772381016 22.65308477787962 100-101 28.277691271216156 34.24690200962133 26.847122777806415 10.628283941356097 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1267.0 1 1302.5 2 2322.5 3 3513.5 4 5046.0 5 8717.5 6 11570.0 7 12903.0 8 13217.0 9 11963.5 10 9940.5 11 8291.5 12 9158.0 13 13012.5 14 21072.5 15 31030.0 16 38086.5 17 41425.5 18 41056.0 19 37434.0 20 32920.5 21 29010.5 22 27256.0 23 29215.0 24 34426.5 25 42375.0 26 52243.0 27 63500.5 28 74439.0 29 86939.5 30 99850.5 31 111631.0 32 125889.5 33 139990.5 34 152329.0 35 168805.5 36 189658.0 37 205956.0 38 213331.5 39 216169.0 40 220283.0 41 224656.5 42 229535.0 43 240296.5 44 255895.5 45 274152.0 46 285829.0 47 293960.5 48 308358.0 49 318923.5 50 327642.5 51 335072.5 52 330665.5 53 326377.5 54 322223.5 55 306965.5 56 287236.0 57 265938.0 58 239985.5 59 209362.5 60 175471.5 61 142249.5 62 113362.0 63 88808.0 64 68602.5 65 51033.0 66 37544.0 67 28356.0 68 21319.0 69 15778.5 70 11509.5 71 8298.5 72 5998.0 73 4305.5 74 3025.0 75 1991.5 76 1270.5 77 810.0 78 540.0 79 394.5 80 289.5 81 190.5 82 125.0 83 79.0 84 52.5 85 35.5 86 23.0 87 20.5 88 16.5 89 10.5 90 6.5 91 3.5 92 1.5 93 1.0 94 1.0 95 1.0 96 0.5 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0018357845528897295 3 4.377640087660125E-4 4 0.0 5 1.4121419637613306E-5 6 5.648567855045322E-4 7 0.0 8 0.0 9 1.4121419637613306E-5 10-11 3.389140713027193E-4 12-13 4.1658187930959244E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.945354189446204E-5 28-29 0.0 30-31 5.668455040613417E-5 32-33 2.7015719238426876E-4 34-35 2.8558279523585068E-5 36-37 7.757749614752309E-4 38-39 2.5372782355390186E-4 40-41 8.05599472932883E-5 42-43 0.0 44-45 1.4982272226388126E-5 46-47 1.5193535636779692E-5 48-49 7.700926213498477E-6 50-51 1.4043548889065559E-4 52-53 0.0 54-55 8.142487788663167E-4 56-57 3.231933572130132E-5 58-59 8.183007395965745E-6 60-61 0.0010445055526246767 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 7.18452224004782E-5 74-75 1.820144430280687E-5 76-77 2.766952077773489E-5 78-79 4.6755906860737344E-5 80-81 0.0 82-83 0.0 84-85 2.9291159791282912E-5 86-87 5.842193250444823E-4 88-89 1.6074628068269748E-4 90-91 0.0 92-93 2.0751507545144386E-5 94-95 1.055166310565623E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 110.0 20-21 480.0 22-23 1075.0 24-25 1736.0 26-27 4228.0 28-29 11639.0 30-31 22781.0 32-33 27841.0 34-35 37288.0 36-37 58645.0 38-39 71235.0 40-41 70760.0 42-43 77122.0 44-45 90919.0 46-47 90985.0 48-49 86086.0 50-51 77701.0 52-53 69152.0 54-55 74126.0 56-57 77839.0 58-59 77541.0 60-61 79383.0 62-63 73180.0 64-65 74656.0 66-67 78365.0 68-69 80162.0 70-71 80309.0 72-73 74065.0 74-75 72972.0 76-77 73071.0 78-79 76998.0 80-81 77858.0 82-83 72373.0 84-85 71469.0 86-87 71849.0 88-89 75919.0 90-91 80526.0 92-93 80162.0 94-95 84124.0 96-97 125185.0 98-99 544400.0 100-101 4005126.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.89198993886282 #Duplication Level Percentage of deduplicated Percentage of total 1 87.00726797952358 68.64176510048516 2 8.047096944449986 12.697029823572045 3 2.4112256729676913 5.706791745962845 4 1.0561994235652943 3.333026971893837 5 0.503801599738089 1.9872955368860161 6 0.30001209015219105 1.4201130478694317 7 0.1887522596261911 1.0423728957156966 8 0.11984448266408017 0.7563815776450267 9 0.07917059588286465 0.562133326846026 >10 0.2799700160147408 3.405358088236179 >50 0.005628218097196975 0.29462848362803007 >100 0.0010307173182082185 0.1531034012597287 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 0.0 0.0 16-17 0.0 0.0 0.0 0.0 0.0 18-19 0.0 0.0 0.0 0.0 0.0 20-21 0.0 0.0 0.0 3.530354909403326E-5 0.0 22-23 0.0 0.0 0.0 7.060709818806652E-5 0.0 24-25 0.0 0.0 0.0 1.4121419637613304E-4 0.0 26-27 0.0 0.0 0.0 2.047605847453929E-4 0.0 28-29 0.0 0.0 0.0 0.0011720778299219043 0.0 30-31 0.0 0.0 0.0 0.004017543886900985 0.0 32-33 0.0 0.0 0.0 0.009129497795717001 0.0 34-35 0.0 0.0 0.0 0.01491221913731965 0.0 36-37 0.0 0.0 0.0 0.023250917433330305 0.0 38-39 0.0 0.0 0.0 0.039561157114773676 0.0 40-41 0.0 0.0 0.0 0.0788469465466139 0.0 42-43 7.060709818806652E-6 0.0 0.0 0.09458526873273392 7.060709818806652E-6 44-45 1.4121419637613304E-5 0.0 0.0 0.11426346699774806 1.4121419637613304E-5 46-47 4.2364258912839915E-5 0.0 0.0 0.13625757808333078 1.4121419637613304E-5 48-49 4.2364258912839915E-5 0.0 0.0 0.15608405125453984 1.4121419637613304E-5 50-51 4.2364258912839915E-5 0.0 0.0 0.1774568198760676 1.4121419637613304E-5 52-53 4.2364258912839915E-5 0.0 0.0 0.20338374633072562 1.4121419637613304E-5 54-55 4.2364258912839915E-5 0.0 0.0 0.2539807928922941 1.4121419637613304E-5 56-57 4.2364258912839915E-5 0.0 0.0 0.3083270763676489 1.4121419637613304E-5 58-59 4.2364258912839915E-5 0.0 0.0 0.3621579280262308 2.824283927522661E-5 60-61 4.2364258912839915E-5 0.0 0.0 0.398414672945803 2.824283927522661E-5 62-63 4.2364258912839915E-5 0.0 0.0 0.41579107980988617 2.824283927522661E-5 64-65 4.2364258912839915E-5 0.0 0.0 0.43221429084843044 2.824283927522661E-5 66-67 4.2364258912839915E-5 0.0 0.0 0.4403905928186085 2.824283927522661E-5 68-69 4.2364258912839915E-5 0.0 0.0 0.4481644343291147 2.824283927522661E-5 70-71 4.2364258912839915E-5 0.0 0.0 0.45569821170578134 2.824283927522661E-5 72-73 4.2364258912839915E-5 0.0 0.0 0.46129735459209503 2.824283927522661E-5 74-75 4.2364258912839915E-5 0.0 0.0 0.4656185090012047 2.824283927522661E-5 76-77 4.2364258912839915E-5 0.0 0.0 0.46972784211575014 2.824283927522661E-5 78-79 4.2364258912839915E-5 0.0 0.0 0.4734700183197177 2.824283927522661E-5 80-81 4.2364258912839915E-5 0.0 0.0 0.4751081029976808 2.824283927522661E-5 82-83 4.2364258912839915E-5 0.0 0.0 0.4756800204930042 2.824283927522661E-5 84-85 4.2364258912839915E-5 0.0 0.0 0.47617427018032066 2.824283927522661E-5 86-87 4.2364258912839915E-5 0.0 0.0 0.47640021289452245 2.824283927522661E-5 88-89 4.2364258912839915E-5 0.0 0.0 0.4764425771534353 2.824283927522661E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9150 0.0 44.797935 1 GTATCAA 16090 0.0 34.120365 1 ATCAACG 19810 0.0 26.884235 3 CAACGCA 20060 0.0 26.528547 5 TCAACGC 20225 0.0 26.454128 4 TATCAAC 20710 0.0 26.132341 2 AACGCAG 21345 0.0 25.12389 6 GTACATG 25125 0.0 24.349226 1 TACATGG 25280 0.0 23.664322 2 ACATGGG 25485 0.0 23.071138 3 ACGCAGA 23350 0.0 22.808424 7 GTACTAG 1845 0.0 22.01671 1 CGCAGAG 24595 0.0 21.65386 8 CATGGGG 18740 0.0 21.587967 4 GCAGAGT 28945 0.0 18.385435 9 GAGTACT 14860 0.0 17.933424 12-13 AGAGTAC 25755 0.0 17.101982 10-11 CAGAGTA 27425 0.0 16.995646 10-11 CTAGTAC 2210 0.0 16.894938 3 AGTACTT 15975 0.0 16.514786 12-13 >>END_MODULE