##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140106_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9054472 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.868248860894372 31.0 31.0 34.0 30.0 34.0 2 32.052689654349805 33.0 31.0 34.0 30.0 34.0 3 32.11919170990865 34.0 31.0 34.0 30.0 34.0 4 35.80597731154285 37.0 35.0 37.0 35.0 37.0 5 35.56317728963102 37.0 35.0 37.0 33.0 37.0 6 35.59376670445278 37.0 35.0 37.0 33.0 37.0 7 35.55206189825315 37.0 35.0 37.0 33.0 37.0 8 35.54450750965932 37.0 35.0 37.0 33.0 37.0 9 37.33257289878416 39.0 37.0 39.0 34.0 39.0 10-11 37.18322984487665 39.0 37.0 39.0 33.5 39.0 12-13 37.1881569129597 39.0 37.0 39.0 33.0 39.0 14-15 38.318292607233204 40.0 38.0 41.0 33.5 41.0 16-17 38.25031536902428 40.0 38.0 41.0 33.0 41.0 18-19 38.30830091473031 40.0 38.0 41.0 33.5 41.0 20-21 38.34670065209523 40.0 38.0 41.0 34.0 41.0 22-23 38.33443690933378 40.0 38.0 41.0 34.0 41.0 24-25 38.288266028350336 40.0 38.0 41.0 34.0 41.0 26-27 38.17414384912176 40.0 38.0 41.0 34.0 41.0 28-29 38.001617684315235 40.0 37.0 41.0 33.0 41.0 30-31 37.90539892372828 40.0 37.0 41.0 33.0 41.0 32-33 37.81850102213667 40.0 37.0 41.0 33.0 41.0 34-35 37.75399287000199 40.0 37.0 41.0 33.0 41.0 36-37 37.713880140019185 39.5 37.0 41.0 33.0 41.0 38-39 37.62616030391739 39.0 37.0 41.0 33.0 41.0 40-41 37.609748726775216 39.0 37.0 41.0 33.0 41.0 42-43 37.55920627097437 39.0 37.0 41.0 32.5 41.0 44-45 37.48780805019588 39.0 37.0 41.0 32.0 41.0 46-47 37.435389225472655 39.0 36.0 40.5 32.0 41.0 48-49 37.450786890260616 39.0 36.0 40.0 32.0 41.0 50-51 37.34589016953504 39.0 36.0 40.0 31.5 41.0 52-53 37.15758740543902 39.0 36.0 40.0 31.0 41.0 54-55 36.96524859617265 39.0 35.0 40.0 31.0 41.0 56-57 36.84686967767636 39.0 35.0 40.0 31.0 41.0 58-59 36.65907930208959 38.5 35.0 40.0 31.0 41.0 60-61 36.475851708369305 38.0 35.0 40.0 30.0 41.0 62-63 36.33123613609533 38.0 35.0 40.0 30.0 41.0 64-65 36.07297969421224 37.5 34.0 40.0 30.0 41.0 66-67 35.937383809838 37.0 34.0 40.0 30.0 41.0 68-69 35.66837831084064 37.0 34.0 39.0 30.0 41.0 70-71 35.349087505363045 36.0 34.0 39.0 29.0 40.5 72-73 35.05948315794977 36.0 34.0 39.0 29.0 40.0 74-75 34.71169673290967 35.0 33.5 38.5 29.0 40.0 76-77 32.58542867696796 33.5 30.5 35.5 26.5 38.5 78-79 33.855046220801455 35.0 32.5 37.0 28.5 39.0 80-81 33.85967142672335 35.0 33.0 36.0 29.0 39.0 82-83 33.69164926286008 35.0 33.0 36.0 29.0 38.0 84-85 33.493922548074636 35.0 33.0 36.0 29.0 37.0 86-87 33.25764473441214 35.0 33.0 35.0 29.0 37.0 88-89 33.09832228665346 35.0 32.0 35.0 29.0 36.0 90-91 32.93283902094515 34.0 32.0 35.0 29.0 36.0 92-93 32.896125967939284 34.0 32.0 35.0 29.0 36.0 94-95 32.85429121273597 34.0 32.0 35.0 29.0 35.5 96-97 32.87363984700441 34.0 32.0 35.0 29.0 35.0 98-99 33.0080334746788 34.0 32.0 35.0 29.0 35.0 100-101 31.825798971020333 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 3.0 19 14.0 20 54.0 21 290.0 22 1304.0 23 4652.0 24 12086.0 25 25937.0 26 47466.0 27 76808.0 28 112863.0 29 154094.0 30 202382.0 31 262562.0 32 338608.0 33 447713.0 34 617272.0 35 884449.0 36 1369896.0 37 2019372.0 38 1876255.0 39 594847.0 40 5544.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.71502214596279 20.47531871543697 13.375434812764345 24.434224325835896 2 15.098777560388916 21.700746650674503 40.15390247983447 23.046573309102115 3 18.264691362387858 26.333777681079066 30.429257593210867 24.972273363322202 4 12.545966236352601 17.953205885445335 38.93273953467414 30.568088343527926 5 12.865101355440714 38.12995390565016 36.091049814942274 12.913894923966854 6 30.13816818915559 38.346366303855156 18.658989723531093 12.856475783458162 7 26.454963520232162 32.45716950222713 23.664750817579513 17.423116159961193 8 24.612811443397412 36.835368187795204 21.311589293749076 17.24023107505831 9 25.65608463972278 16.135706201311354 21.194863709336115 37.01334544962975 10-11 24.192522960388825 26.670966576941012 29.345589918330234 19.790920544339926 12-13 24.852122175720755 24.175398484322706 29.459019746568366 21.513459593388166 14-15 21.933748424742404 25.63715618299754 26.733172665019712 25.69592272724035 16-17 21.76087803689039 28.719014687936234 27.437239158574855 22.082868116598522 18-19 21.749023973159684 28.192024276270693 28.8818020024102 21.177149748159422 20-21 22.436333988141875 27.387595556726797 28.75933035904611 21.41674009608522 22-23 22.15156969401437 27.323402139878528 28.632847897056777 21.89218026905032 24-25 21.936397435399527 27.426068193596542 28.705716697685485 21.93181767331844 26-27 21.99153126895671 27.580091275182028 28.553239287413362 21.875138168447897 28-29 21.95603805675948 27.739170147068755 28.460893934623066 21.8438978615487 30-31 22.190158928793508 27.592347464615013 28.398261779507244 21.81923182708423 32-33 21.944302641183842 27.704412176982913 28.423438013018647 21.927847168814594 34-35 22.043222406735268 27.727730951231916 28.47376635671372 21.7552802853191 36-37 22.04909355082934 27.70493157650163 28.380160448718172 21.865814423950862 38-39 21.931228562502795 27.7992956268027 28.423170157318733 21.846305653375772 40-41 22.17408741932774 27.636504624169206 28.28701742264656 21.90239053385649 42-43 22.009421541579684 27.787518120826814 28.136647339120813 22.06641299847269 44-45 22.08908508962697 27.845574284537634 28.0083984191551 22.056942206680297 46-47 22.107635205392796 27.833929700621734 27.819358173910764 22.23907692007471 48-49 22.115632695172106 27.919796210125796 27.790334106476156 22.174236988225935 50-51 22.09625556642123 27.988954363386263 27.72116707023612 22.193622999956382 52-53 22.263103416734825 27.931620713836637 27.575048268277257 22.23022760115128 54-55 22.187249127224415 27.831372357148876 27.651309905802062 22.330068609824647 56-57 22.190985111818822 27.935047258755958 27.619375843906358 22.254591785518862 58-59 22.217841682512084 27.983226334262078 27.597400173872455 22.201531809353384 60-61 22.293680750474785 27.95468992943362 27.588754757682622 22.162874562408973 62-63 22.257886929316868 27.997145776966004 27.5624959471522 22.182471346564924 64-65 22.196984409569673 27.945298424586497 27.549942490991413 22.307774674852418 66-67 22.22792805005363 28.001487899326015 27.445439893281705 22.32514415733865 68-69 22.182592881500828 27.980838314509597 27.543366875821235 22.293201928168337 70-71 22.15229864806234 27.780316559891972 27.587363923635245 22.480020868410445 72-73 22.22252522737849 27.875868366349653 27.529580840786977 22.372025565484876 74-75 22.10424723653738 27.965272758221726 27.546679472873294 22.383800532367605 76-77 22.212034195395898 27.851429830445362 27.4569428603023 22.479593113856442 78-79 22.15203873818841 27.87581075287876 27.46740547473377 22.50474503419906 80-81 22.190872797145694 27.87207532345932 27.509166871333957 22.427885008061025 82-83 22.206060072784666 27.918447250798845 27.547910156169443 22.32758252024705 84-85 22.291404517852513 27.868862323741883 27.514366556123555 22.32536660228205 86-87 22.120448249554265 27.926051763586802 27.576871695329203 22.376628291529734 88-89 22.207729611798342 27.84727492376949 27.542965393269576 22.40203007116259 90-91 22.25509626502724 27.85834379587819 27.52998794951735 22.35657198957722 92-93 22.258795883798577 27.864012611007215 27.57049729274573 22.306694212448473 94-95 22.106123692113826 27.884931823373314 27.6399592109135 22.368985273599357 96-97 22.06962725087884 27.88804968612987 27.66567760042477 22.37664546256652 98-99 22.316235023343655 28.4540935593211 27.726164290302435 21.503507127032805 100-101 26.38079695426518 35.515780127939976 28.339464898514212 9.763958019280635 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1751.0 1 1603.5 2 2271.5 3 3270.0 4 4328.0 5 6943.5 6 9290.5 7 10928.5 8 11990.0 9 11639.5 10 10355.0 11 9107.0 12 9704.0 13 12789.5 14 19981.0 15 29735.5 16 37418.0 17 41842.0 18 43326.5 19 42719.5 20 41452.0 21 40634.0 22 41826.5 23 47061.5 24 56881.0 25 71241.5 26 88957.5 27 107613.5 28 127601.5 29 149038.5 30 168681.5 31 187338.5 32 206925.0 33 224171.0 34 240419.0 35 257099.5 36 275220.0 37 293531.0 38 309324.0 39 321917.0 40 333259.0 41 344914.0 42 354488.0 43 362685.5 44 370361.0 45 377672.5 46 382516.5 47 384949.5 48 384465.5 49 379888.5 50 374843.5 51 366079.5 52 352153.5 53 337441.5 54 319387.0 55 296442.0 56 272878.0 57 248056.0 58 220166.0 59 190248.5 60 158439.5 61 128873.5 62 103334.0 63 80534.5 64 60764.5 65 45521.5 66 34311.5 67 26021.0 68 19964.5 69 14936.0 70 10972.5 71 8077.0 72 5823.5 73 4047.0 74 2751.5 75 1881.0 76 1292.0 77 871.0 78 593.5 79 388.5 80 269.0 81 179.5 82 130.0 83 103.5 84 78.0 85 57.5 86 40.0 87 28.0 88 19.0 89 12.0 90 9.5 91 9.0 92 6.0 93 3.5 94 1.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 4.0863785320668065E-4 3 2.208853260576652E-5 4 0.0 5 0.0 6 0.0 7 1.104426630288326E-5 8 0.0010823380976825595 9 0.0 10-11 2.153631929062236E-4 12-13 4.1968211950956386E-4 14-15 5.52213315144163E-6 16-17 5.52213315144163E-6 18-19 3.699829211465892E-4 20-21 5.5223926671903E-6 22-23 0.0 24-25 2.265015923061939E-4 26-27 0.0 28-29 4.811911239153427E-4 30-31 3.43454969757405E-4 32-33 0.0010718434446582517 34-35 0.00121455477876049 36-37 3.918132743314784E-5 38-39 0.0017527582835863713 40-41 3.975980759433909E-4 42-43 1.4887729058447906E-4 44-45 1.6184126343000708E-4 46-47 4.6741042181511944E-5 48-49 0.0 50-51 0.0 52-53 5.423060480079442E-5 54-55 3.346987622900625E-4 56-57 5.781832277410837E-4 58-59 6.033745807246454E-4 60-61 6.103286739458113E-4 62-63 1.0181825123971675E-4 64-65 5.791437591178945E-5 66-67 1.2370931306497312E-4 68-69 1.1867909377435188E-4 70-71 1.6032043780305155E-4 72-73 0.0 74-75 6.852635780695097E-6 76-77 8.607570649933364E-4 78-79 2.8134343459422787E-5 80-81 8.559995474615726E-5 82-83 0.0 84-85 7.338392812719372E-6 86-87 7.445362209426126E-6 88-89 6.049436600845772E-5 90-91 9.229952025016862E-5 92-93 9.399499648967853E-5 94-95 3.1159786426030025E-4 96-97 9.004898910595516E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 276.0 20-21 860.0 22-23 1747.0 24-25 3532.0 26-27 5655.0 28-29 11333.0 30-31 21807.0 32-33 26562.0 34-35 36794.0 36-37 56993.0 38-39 69011.0 40-41 69587.0 42-43 77674.0 44-45 91077.0 46-47 92257.0 48-49 88550.0 50-51 83175.0 52-53 80055.0 54-55 86285.0 56-57 90408.0 58-59 91142.0 60-61 90755.0 62-63 86967.0 64-65 89163.0 66-67 95035.0 68-69 97982.0 70-71 97576.0 72-73 92763.0 74-75 94097.0 76-77 92062.0 78-79 98809.0 80-81 100520.0 82-83 96300.0 84-85 97112.0 86-87 101569.0 88-89 109708.0 90-91 116294.0 92-93 121964.0 94-95 139451.0 96-97 209169.0 98-99 764214.0 100-101 5178182.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.72929987527242 #Duplication Level Percentage of deduplicated Percentage of total 1 89.43626879944927 75.77872438834005 2 7.265176542566984 12.311466438439055 3 1.8579348000879374 4.722645444760655 4 0.6874521274109855 2.329893498131975 5 0.3002670036441302 1.2720706497206513 6 0.15808473806373072 0.8036645506263438 7 0.08883816285205187 0.5269036738461853 8 0.058308105638730234 0.3952323974258429 9 0.03257367258583635 0.24839500253078417 >10 0.11287639957685373 1.4494620554141744 >50 0.001958434840845155 0.10784203541129524 >100 2.4031818492187545E-4 0.04467068764719017 >500 2.0895097725849523E-5 0.009029177705796797 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.313279890864978E-5 0.0 2.208853260576652E-5 0.0 3 0.0 3.313279890864978E-5 0.0 2.208853260576652E-5 0.0 4 0.0 3.313279890864978E-5 0.0 2.208853260576652E-5 0.0 5 0.0 3.313279890864978E-5 0.0 2.208853260576652E-5 0.0 6 2.0984105975478196E-4 3.313279890864978E-5 0.0 2.208853260576652E-5 0.0 7 2.0984105975478196E-4 3.313279890864978E-5 0.0 3.313279890864978E-5 0.0 8 2.0984105975478196E-4 4.417706521153304E-5 0.0 3.313279890864978E-5 1.104426630288326E-5 9 2.0984105975478196E-4 1.104426630288326E-4 0.0 7.730986412018283E-5 1.104426630288326E-5 10-11 2.153631929062236E-4 1.104426630288326E-4 0.0 1.1596479618027423E-4 1.104426630288326E-5 12-13 2.208853260576652E-4 1.104426630288326E-4 0.0 1.3253119563459912E-4 1.104426630288326E-5 14-15 2.208853260576652E-4 1.656639945432489E-4 0.0 1.3253119563459912E-4 2.761066575720815E-5 16-17 4.196821195095639E-4 1.656639945432489E-4 0.0 1.4357546193748239E-4 3.313279890864978E-5 18-19 4.196821195095639E-4 1.822303939975738E-4 0.0 1.822303939975738E-4 3.313279890864978E-5 20-21 4.196821195095639E-4 1.987967934518987E-4 0.0 2.3192959236054847E-4 4.417706521153304E-5 22-23 4.3072638581244713E-4 2.208853260576652E-4 0.0 2.7058452442063987E-4 5.52213315144163E-5 24-25 4.3072638581244713E-4 2.3192959236054847E-4 0.0 3.202837227836145E-4 5.52213315144163E-5 26-27 4.3072638581244713E-4 2.3192959236054847E-4 0.0 4.252042526610055E-4 5.52213315144163E-5 28-29 4.3072638581244713E-4 2.3192959236054847E-4 0.0 9.056298368364273E-4 5.52213315144163E-5 30-31 4.3072638581244713E-4 2.4297385866343173E-4 0.0 0.0023634729888170176 5.52213315144163E-5 32-33 4.3624851896388876E-4 2.4297385866343173E-4 0.0 0.005085884632477741 5.52213315144163E-5 34-35 4.583370515696553E-4 2.9819519017784804E-4 0.0 0.008349465324979745 6.626559781729956E-5 36-37 4.749034510239802E-4 3.534165216922643E-4 0.0 0.013324907294428654 6.626559781729956E-5 38-39 4.749034510239802E-4 3.644607879951476E-4 0.0 0.02045950332609124 7.178773096874119E-5 40-41 4.8042558417542183E-4 3.865493206009141E-4 0.0 0.028300932401138353 7.730986412018283E-5 42-43 4.8594771732686346E-4 3.975935869037974E-4 0.0 0.03519255457413751 7.730986412018283E-5 44-45 4.914698504783051E-4 4.4177065211533045E-4 0.0 0.04261430152967506 8.283199727162445E-5 46-47 4.969919836297467E-4 4.749034510239802E-4 0.0 0.05143314817252734 8.835413042306608E-5 48-49 5.025141167811884E-4 4.749034510239802E-4 0.0 0.05952307323938934 1.104426630288326E-4 50-51 5.908682472042545E-4 5.466911819927214E-4 0.0 0.06748046711061673 1.104426630288326E-4 52-53 6.184789129614626E-4 5.52213315144163E-4 0.0 0.07469789513955094 1.4357546193748239E-4 54-55 6.240010461129042E-4 5.577354482956046E-4 0.0 0.0822963503559346 1.7670826084613216E-4 56-57 6.295231792643459E-4 5.963903803556961E-4 0.0 0.08941437998814288 1.822303939975738E-4 58-59 6.295231792643459E-4 6.019125135071377E-4 0.0 0.0961292939002959 1.987967934518987E-4 60-61 6.460895787186707E-4 6.12956779810021E-4 0.0 0.1033191112634729 1.987967934518987E-4 62-63 7.841429075047115E-4 6.240010461129042E-4 0.0 0.10965299798817646 1.987967934518987E-4 64-65 7.841429075047115E-4 7.178773096874119E-4 0.0 0.11585987565039685 1.987967934518987E-4 66-67 8.06231440110478E-4 7.178773096874119E-4 0.0 0.12234285997018932 1.987967934518987E-4 68-69 8.172757064133613E-4 7.399658422931784E-4 0.0 0.12920134934427982 1.987967934518987E-4 70-71 8.393642390191278E-4 7.399658422931784E-4 0.0 0.1355518024684377 1.987967934518987E-4 72-73 9.387626357450771E-4 7.510101085960617E-4 0.0 0.14086409456012455 2.3192959236054847E-4 74-75 9.387626357450771E-4 7.786207743532699E-4 0.0 0.14554686347254703 2.3192959236054847E-4 76-77 9.498069020479604E-4 7.896650406561531E-4 0.0 0.14941235667855618 2.3192959236054847E-4 78-79 9.498069020479604E-4 8.06231440110478E-4 0.0 0.15295204402863027 2.3192959236054847E-4 80-81 9.498069020479604E-4 8.06231440110478E-4 0.0 0.15461972824036563 2.429738586634317E-4 82-83 9.498069020479604E-4 8.06231440110478E-4 0.0 0.15526581781908433 2.6506239126919824E-4 84-85 9.498069020479604E-4 8.172757064133613E-4 0.0 0.15619905832167796 2.6506239126919824E-4 86-87 9.55329035199402E-4 8.614527716248943E-4 0.0 0.15660217404173318 2.6506239126919824E-4 88-89 9.829397009566102E-4 9.277183694421939E-4 0.0 0.15671813883791347 2.6506239126919824E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9335 0.0 43.80255 1 GTATCAA 15930 0.0 32.957214 1 TCAACGC 18670 0.0 27.270332 4 ATCAACG 18805 0.0 27.007929 3 CAACGCA 19080 0.0 26.640701 5 AACGCAG 19735 0.0 25.90479 6 TATCAAC 20040 0.0 25.59376 2 ACGCAGA 23395 0.0 21.727179 7 CGCAGAG 23945 0.0 21.210678 8 GTACATG 23370 0.0 21.196152 1 TACATGG 23250 0.0 20.748775 2 ACATGGG 23500 0.0 20.030283 3 CATGGGG 18215 0.0 17.633081 4 GCAGAGT 28790 0.0 17.554043 9 AGAGTAC 25320 0.0 16.982283 10-11 GAGTACT 16495 0.0 16.965033 12-13 CAGAGTA 28070 0.0 16.114597 10-11 GTGGTAT 5490 0.0 15.215586 1 AGTACTT 18305 0.0 15.002314 12-13 GAGTACA 17145 0.0 14.738352 1 >>END_MODULE