##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140105_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6974677 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.762102245021524 34.0 31.0 34.0 31.0 34.0 2 32.95010966099218 34.0 33.0 34.0 31.0 34.0 3 33.053630870648206 34.0 33.0 34.0 31.0 34.0 4 36.43422340561434 37.0 37.0 37.0 35.0 37.0 5 36.30368245009769 37.0 37.0 37.0 35.0 37.0 6 36.336168112157736 37.0 37.0 37.0 35.0 37.0 7 36.33075352450013 37.0 37.0 37.0 35.0 37.0 8 36.337322144093555 37.0 37.0 37.0 35.0 37.0 9 38.21528452141941 39.0 39.0 39.0 37.0 39.0 10-11 38.12040213475119 39.0 38.0 39.0 37.0 39.0 12-13 38.100578707802526 39.0 38.0 39.0 37.0 39.0 14-15 39.586696057752924 41.0 39.0 41.0 37.0 41.0 16-17 39.55631672979265 41.0 39.0 41.0 37.0 41.0 18-19 39.589728814682026 41.0 39.5 41.0 37.0 41.0 20-21 39.60181045964051 41.0 39.5 41.0 37.0 41.0 22-23 39.549886320362376 41.0 39.0 41.0 37.0 41.0 24-25 39.52406524446481 41.0 39.0 41.0 37.0 41.0 26-27 39.40243354260492 41.0 39.0 41.0 36.5 41.0 28-29 39.331210655384986 40.0 39.0 41.0 36.0 41.0 30-31 39.25952805072174 40.0 39.0 41.0 36.0 41.0 32-33 39.16803940086264 40.0 39.0 41.0 35.5 41.0 34-35 39.126036998686715 40.0 39.0 41.0 35.0 41.0 36-37 39.08701797931627 40.0 39.0 41.0 35.0 41.0 38-39 39.02084839546319 40.0 39.0 41.0 35.0 41.0 40-41 38.95121403129533 40.0 38.0 41.0 35.0 41.0 42-43 38.93577082466882 40.0 38.0 41.0 35.0 41.0 44-45 38.865623401554714 40.0 38.0 41.0 35.0 41.0 46-47 38.74714877091409 40.0 38.0 41.0 35.0 41.0 48-49 38.72716365758242 40.0 38.0 41.0 35.0 41.0 50-51 38.61112739989436 40.0 38.0 41.0 35.0 41.0 52-53 38.431017033817355 40.0 37.5 41.0 34.0 41.0 54-55 38.21860202111222 40.0 37.0 41.0 34.0 41.0 56-57 38.0550108036394 40.0 37.0 41.0 34.0 41.0 58-59 37.8694207494058 39.0 36.0 41.0 34.0 41.0 60-61 37.621281751752804 39.0 36.0 41.0 33.0 41.0 62-63 37.4344723818495 39.0 35.0 40.5 33.0 41.0 64-65 37.13934826329673 38.5 35.0 40.0 33.0 41.0 66-67 36.88454755897207 37.5 35.0 40.0 33.0 41.0 68-69 36.60631813767484 37.0 35.0 40.0 33.0 41.0 70-71 36.15655834129799 36.5 35.0 39.0 32.0 41.0 72-73 35.89762661350643 36.0 35.0 39.0 32.0 40.5 74-75 35.54298772315444 35.5 34.5 38.5 31.5 40.0 76-77 33.756111360402755 34.5 32.0 36.0 29.0 39.0 78-79 34.81999786902573 35.0 34.0 37.0 31.0 39.0 80-81 34.78401659562536 35.0 34.0 36.5 31.5 39.0 82-83 34.54068693418826 35.0 34.0 36.0 31.0 37.5 84-85 34.3177179641326 35.0 34.0 36.0 31.0 37.0 86-87 34.153962314452116 35.0 34.0 35.0 31.0 37.0 88-89 34.006193650334566 35.0 34.0 35.0 31.0 36.0 90-91 33.95408395640192 35.0 34.0 35.0 31.0 36.0 92-93 33.84698281204336 35.0 34.0 35.0 31.0 36.0 94-95 33.70310399695002 35.0 34.0 35.0 31.0 36.0 96-97 33.74061848339258 35.0 34.0 35.0 31.0 35.0 98-99 33.77783487706413 35.0 34.0 35.0 31.0 35.0 100-101 32.52640342266778 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 10.0 20 33.0 21 111.0 22 386.0 23 1105.0 24 2999.0 25 6396.0 26 11965.0 27 20095.0 28 30480.0 29 43464.0 30 59636.0 31 80815.0 32 109389.0 33 157220.0 34 253401.0 35 430496.0 36 883953.0 37 1812764.0 38 2086081.0 39 960486.0 40 23390.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.450771985570086 19.432756527649957 12.485309355544349 24.631162131235612 2 15.786895902865577 20.705498910185586 39.6023589657416 23.905246221207236 3 18.595743155570528 25.9661058260988 29.693862774476138 25.74428824385453 4 12.658421314707477 16.939350739826374 38.35774760608986 32.04448033937629 5 13.346897641281451 37.92754847285401 35.34129250716557 13.38426137869897 6 31.156486266539197 37.28055510790228 18.170948940189636 13.392009685368889 7 27.346413317778012 32.01285163456315 23.041468443628286 17.599266604030554 8 25.866230077751272 35.16614461142788 20.815946028755167 18.15167928206568 9 26.511826499180753 15.50340116157367 20.644471513802216 37.340300825443364 10-11 25.13823636691056 25.921236455230428 28.489337383047864 20.45118979481115 12-13 25.78866855048866 23.49593717993468 28.437023475226464 22.278370794350195 14-15 22.839236856416434 24.69502171928535 25.982880640924304 26.482860783373912 16-17 22.565969721608614 27.680557823681294 26.656453051517655 23.097019403192434 18-19 22.55191889172789 27.083992563383223 28.22272629972685 22.141362245162032 20-21 23.423629774411598 26.464361746666988 27.78425377576969 22.327754703151722 22-23 23.270205595024382 26.310063259180243 27.659883521891572 22.759847623903802 24-25 22.910440451412466 26.460593193418664 27.824615663939767 22.804350691229107 26-27 22.775774650190662 26.718118143778902 27.758621567688955 22.74748563834148 28-29 22.67344469402297 26.889692392491916 27.72899260502486 22.707870308460254 30-31 23.059748853956954 26.66221277908562 27.50692444080399 22.77111392615344 32-33 22.8418987336933 26.900915289371103 27.481777415456747 22.775408561478848 34-35 22.816905426326056 26.969055827172657 27.58371672107295 22.63032202542834 36-37 22.930942559045523 26.766204451210264 27.54485904811434 22.757993941629877 38-39 22.82093634630887 26.8629173254119 27.600868582106212 22.71527774617301 40-41 22.9636762795462 26.68953775010663 27.698396608564956 22.64838936178222 42-43 22.914838561909292 26.82131220514857 27.349945683269166 22.913903549672973 44-45 22.916400755178547 27.226382371746983 27.029580145168016 22.827636727906462 46-47 23.04646663882086 26.94469340196011 26.900191155982593 23.10864880323644 48-49 23.07524917131535 26.876089492205736 26.879469505381586 23.16919183109733 50-51 22.826580579346306 27.037889471606174 26.87059217797683 23.264937771070684 52-53 23.02235805063424 27.118747300123484 26.619872375890534 23.239022273351736 54-55 23.08895913416353 26.90038383738793 26.670923065392632 23.339733963055902 56-57 23.19533057206169 26.932340735244324 26.74243336556844 23.129895327125542 58-59 23.113704341182384 27.049496615442404 26.84674410295208 22.990054940423136 60-61 23.206923489402627 27.1035218652099 26.546532567325205 23.143022078062263 62-63 23.190613023356182 27.074059425724066 26.57322321299949 23.162104337920262 64-65 23.02362493288081 27.056977639187668 26.609652504660065 23.309744923271456 66-67 23.096824505282846 27.099941422210865 26.419564361700115 23.383669710806174 68-69 23.08293415622145 27.043205288022175 26.604175853799607 23.269684701956766 70-71 23.144390459363958 26.73475265017668 26.589849823321554 23.53100706713781 72-73 23.176833108404004 26.89385811394745 26.631647368559513 23.29766140908903 74-75 22.904636091413245 27.146367553981836 26.673860289778244 23.275136064826672 76-77 23.073386607532214 27.003745885097764 26.516281004203517 23.40658650316651 78-79 23.18319166843382 27.03798354415177 26.405690783463605 23.373134003950806 80-81 23.050129887149946 27.08574510183469 26.525128964495504 23.33899604651986 82-83 23.399025193742766 26.86770967875265 26.699909212683725 23.03335591482086 84-85 23.419440284668873 26.89030974035425 26.42144165114911 23.26880832382777 86-87 22.953689181895022 27.155190362595093 26.647941507900125 23.24317894760976 88-89 23.25317884463462 26.872026018215173 26.62491416347169 23.24988097367852 90-91 23.25715049559807 26.89213781178766 26.620164738321563 23.230546954292716 92-93 23.420824495368144 26.901960487153215 26.54884465258477 23.128370364893872 94-95 23.074944928252965 27.056054384982808 26.580887223614862 23.288113463149358 96-97 22.967480342679053 26.98444363625802 26.76395431553706 23.284121705525866 98-99 23.38644922551525 27.54441715493674 26.721561894025324 22.347571725522688 100-101 27.916555012050082 34.72019137673087 27.00897171770611 10.354281893512946 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1123.0 1 1150.0 2 1931.5 3 2877.0 4 4138.5 5 6989.0 6 9186.0 7 10403.5 8 10865.5 9 9989.0 10 8383.0 11 7129.0 12 8018.5 13 11168.0 14 17713.0 15 26033.0 16 32093.5 17 34983.0 18 34682.5 19 31885.5 20 28471.5 21 25626.5 22 24595.0 23 26901.5 24 32319.0 25 40394.0 26 51788.0 27 64691.5 28 76123.5 29 88578.0 30 100164.5 31 110382.0 32 124653.0 33 140523.5 34 156160.5 35 172872.5 36 191240.5 37 206504.5 38 213254.0 39 216049.5 40 221889.0 41 229529.0 42 236403.0 43 245740.5 44 258068.0 45 274264.5 46 286177.0 47 293295.0 48 303092.0 49 310114.5 50 314378.0 51 317524.0 52 312169.5 53 305847.0 54 299424.0 55 284138.5 56 266648.0 57 249682.5 58 229655.0 59 201374.5 60 166875.0 61 133760.0 62 105912.0 63 83058.0 64 63657.5 65 47547.0 66 36239.5 67 28044.5 68 20967.5 69 15672.5 70 11891.5 71 8793.0 72 6499.5 73 4716.5 74 3365.5 75 2394.5 76 1569.0 77 997.5 78 677.0 79 475.5 80 319.0 81 212.5 82 161.5 83 118.0 84 83.5 85 59.5 86 44.5 87 34.0 88 21.5 89 10.5 90 7.0 91 5.5 92 3.0 93 2.5 94 3.0 95 2.5 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0013620702435395934 3 3.871147007954633E-4 4 0.0 5 0.0 6 4.731401898611219E-4 7 0.0 8 0.0 9 1.4337581510943087E-5 10-11 4.1578986381734953E-4 12-13 3.7994591003999185E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 8.607197008195701E-5 28-29 7.177984146417095E-6 30-31 2.1574262422712003E-5 32-33 2.308180299176232E-4 34-35 3.620165567548199E-5 36-37 8.225874656160258E-4 38-39 1.9819206264278547E-4 40-41 6.668814024782646E-5 42-43 0.0 44-45 7.5614635454659085E-6 46-47 0.0 48-49 0.0 50-51 2.35342662839472E-5 52-53 0.0 54-55 6.9737119914661E-4 56-57 1.0542288850929441E-4 58-59 0.0 60-61 9.223655702039026E-4 62-63 8.409641014290166E-6 64-65 8.506867040815693E-6 66-67 0.0 68-69 0.0 70-71 0.0 72-73 6.263775272208015E-5 74-75 2.7175365350140993E-5 76-77 0.0 78-79 5.573149679474229E-5 80-81 0.0 82-83 0.0 84-85 9.670772102839763E-6 86-87 3.8211797608372574E-4 88-89 9.933336386178717E-5 90-91 0.0 92-93 2.0479976931353984E-5 94-95 1.040709430804791E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 114.0 20-21 455.0 22-23 917.0 24-25 1648.0 26-27 3730.0 28-29 10288.0 30-31 20024.0 32-33 24580.0 34-35 32347.0 36-37 52636.0 38-39 64750.0 40-41 62493.0 42-43 68789.0 44-45 80390.0 46-47 82129.0 48-49 77721.0 50-51 70547.0 52-53 66024.0 54-55 70922.0 56-57 74536.0 58-59 73338.0 60-61 73546.0 62-63 68081.0 64-65 68815.0 66-67 72593.0 68-69 74588.0 70-71 73937.0 72-73 68612.0 74-75 67411.0 76-77 68022.0 78-79 71631.0 80-81 73708.0 82-83 68514.0 84-85 66748.0 86-87 68576.0 88-89 72537.0 90-91 76944.0 92-93 78084.0 94-95 82180.0 96-97 125654.0 98-99 551033.0 100-101 4065085.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.35772082051977 #Duplication Level Percentage of deduplicated Percentage of total 1 87.72152402387891 71.3682326148526 2 7.929138517631755 12.901932757294288 3 2.3089714229695786 5.635579572375518 4 0.9295044498475813 3.024894541285214 5 0.42864537469472885 1.7436805362710421 6 0.22719518868968286 1.1090449639908317 7 0.1474997394156259 0.8400169834333137 8 0.08531378782221215 0.5552748265424476 9 0.053085327346906894 0.388701111776 >10 0.16541504531984605 1.997071689706383 >50 0.0026218649381674303 0.14604380657578256 >100 8.977342595646329E-4 0.12994403743740093 >500 1.2501545916617312E-4 0.07623144057600224 >1k 6.250772626953529E-5 0.08335111788315246 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.4337581510943087E-5 2 0.0 0.0 0.0 0.0 1.4337581510943087E-5 3 0.0 0.0 0.0 0.0 1.4337581510943087E-5 4 0.0 0.0 0.0 0.0 1.4337581510943087E-5 5 0.0 0.0 0.0 0.0 1.4337581510943087E-5 6 0.0 0.0 0.0 0.0 4.301274453282926E-5 7 0.0 0.0 0.0 0.0 4.301274453282926E-5 8 0.0 0.0 0.0 0.0 4.301274453282926E-5 9 0.0 0.0 0.0 1.4337581510943087E-5 7.168790755471544E-5 10-11 0.0 0.0 0.0 3.584395377735772E-5 7.168790755471544E-5 12-13 0.0 0.0 0.0 5.0181535288300806E-5 7.168790755471544E-5 14-15 0.0 0.0 0.0 6.45191167992439E-5 1.147006520875447E-4 16-17 0.0 0.0 0.0 7.168790755471544E-5 1.2186944284301625E-4 18-19 0.0 0.0 0.0 1.5771339662037397E-4 1.4337581510943088E-4 20-21 0.0 0.0 0.0 2.580764671969756E-4 1.5054460586490242E-4 22-23 0.0 0.0 0.0 3.0108921172980485E-4 2.1506372266414634E-4 24-25 0.0 0.0 0.0 3.29764374751691E-4 2.580764671969756E-4 26-27 0.0 0.0 0.0 4.1578986381734953E-4 2.580764671969756E-4 28-29 0.0 0.0 0.0 9.176052167003577E-4 2.6524525795244716E-4 30-31 0.0 0.0 0.0 0.002623777416502585 2.795828394633902E-4 32-33 0.0 0.0 0.0 0.004953634412030837 2.8675163021886176E-4 34-35 0.0 0.0 0.0 0.0077566315974202105 2.8675163021886176E-4 36-37 0.0 0.0 0.0 0.01198621814314842 2.8675163021886176E-4 38-39 0.0 0.0 0.0 0.018696206290269787 2.8675163021886176E-4 40-41 0.0 0.0 0.0 0.02739194947665677 2.8675163021886176E-4 42-43 0.0 0.0 0.0 0.03501954284047849 2.9392042097433333E-4 44-45 0.0 0.0 0.0 0.04259695466901191 3.0825800248527636E-4 46-47 0.0 0.0 0.0 0.050948595899136265 3.29764374751691E-4 48-49 7.1687907554715436E-6 0.0 0.0 0.0596801830393006 3.441019562626341E-4 50-51 1.4337581510943087E-5 0.0 0.0 0.06889924795083702 3.441019562626341E-4 52-53 1.4337581510943087E-5 0.0 0.0 0.07699281271376437 3.584395377735772E-4 54-55 1.4337581510943087E-5 0.0 0.0 0.08494300166158232 3.7994591003999185E-4 56-57 1.4337581510943087E-5 0.0 0.0 0.09282867149260102 3.942834915509349E-4 58-59 1.4337581510943087E-5 0.0 0.0 0.1007430164866416 4.0145228230640645E-4 60-61 1.4337581510943087E-5 0.0 0.0 0.10948177241756141 4.0145228230640645E-4 62-63 1.4337581510943087E-5 0.0 0.0 0.11708069061836125 4.0145228230640645E-4 64-65 1.4337581510943087E-5 0.0 0.0 0.1240989367679679 4.0145228230640645E-4 66-67 1.4337581510943087E-5 0.0 0.0 0.13104549501001983 4.08621073061878E-4 68-69 1.4337581510943087E-5 0.0 0.0 0.13830748004531251 4.1578986381734953E-4 70-71 1.4337581510943087E-5 0.0 0.0 0.14473071656221498 4.1578986381734953E-4 72-73 1.4337581510943087E-5 0.0 0.0 0.15016465995486245 4.444650268392357E-4 74-75 1.4337581510943087E-5 0.0 0.0 0.15407165091659442 4.444650268392357E-4 76-77 1.4337581510943087E-5 7.1687907554715436E-6 0.0 0.1575986959682864 4.516338175947072E-4 78-79 1.4337581510943087E-5 1.4337581510943087E-5 0.0 0.1611544161830003 4.588026083501788E-4 80-81 1.4337581510943087E-5 1.4337581510943087E-5 0.0 0.16303980815168934 4.6597139910565036E-4 82-83 1.4337581510943087E-5 1.4337581510943087E-5 0.0 0.16374234964572554 5.01815352883008E-4 84-85 1.4337581510943087E-5 1.4337581510943087E-5 0.0 0.16415097071878743 5.01815352883008E-4 86-87 1.4337581510943087E-5 1.4337581510943087E-5 0.0 0.16431585290616324 5.01815352883008E-4 88-89 1.4337581510943087E-5 1.4337581510943087E-5 0.0 0.16440904718598437 5.161529343939512E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8265 0.0 44.250412 1 GTATCAA 14015 0.0 34.705357 1 ATCAACG 16915 0.0 27.97022 3 CAACGCA 17385 0.0 27.214443 5 TCAACGC 17720 0.0 26.77015 4 TATCAAC 18195 0.0 26.34495 2 AACGCAG 18380 0.0 25.786495 6 ACGCAGA 20240 0.0 23.396133 7 TACATGG 22535 0.0 22.908855 2 GTACATG 23255 0.0 22.770164 1 ACATGGG 22450 0.0 22.348648 3 CGCAGAG 21295 0.0 22.237038 8 CATGGGG 17805 0.0 19.888607 4 GCAGAGT 24980 0.0 18.956675 9 GTACTAG 1925 0.0 18.740454 1 AGAGTAC 22580 0.0 17.656748 10-11 GAGTACT 13520 0.0 17.374165 12-13 CAGAGTA 24190 0.0 17.184381 10-11 GAGTACA 16220 0.0 16.386974 1 CTAGTAC 2685 0.0 16.215384 3 >>END_MODULE