##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140103_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5594631 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.79724346431427 34.0 31.0 34.0 31.0 34.0 2 32.99375812274304 34.0 33.0 34.0 31.0 34.0 3 33.102993745253265 34.0 33.0 34.0 31.0 34.0 4 36.4686684430126 37.0 37.0 37.0 35.0 37.0 5 36.34152815440375 37.0 37.0 37.0 35.0 37.0 6 36.369557706308065 37.0 37.0 37.0 35.0 37.0 7 36.37461612749795 37.0 37.0 37.0 35.0 37.0 8 36.38476514358141 37.0 37.0 37.0 35.0 37.0 9 38.28602190207004 39.0 39.0 39.0 37.0 39.0 10-11 38.19769176912651 39.0 39.0 39.0 37.0 39.0 12-13 38.18269533772647 39.0 39.0 39.0 37.0 39.0 14-15 39.69875913174613 41.0 40.0 41.0 37.5 41.0 16-17 39.67891197828776 41.0 40.0 41.0 37.5 41.0 18-19 39.71852862145868 41.0 40.0 41.0 38.0 41.0 20-21 39.738747067942235 41.0 40.0 41.0 38.0 41.0 22-23 39.691252160573214 41.0 40.0 41.0 37.5 41.0 24-25 39.676297850413164 41.0 40.0 41.0 37.0 41.0 26-27 39.56790707891105 41.0 39.5 41.0 37.0 41.0 28-29 39.504244374675636 41.0 39.0 41.0 37.0 41.0 30-31 39.438208555031665 40.5 39.0 41.0 37.0 41.0 32-33 39.357077619752204 40.0 39.0 41.0 36.0 41.0 34-35 39.32368323374566 40.0 39.0 41.0 36.0 41.0 36-37 39.28857481364595 40.0 39.0 41.0 36.0 41.0 38-39 39.231170375073035 40.0 39.0 41.0 36.0 41.0 40-41 39.174462100685616 40.0 39.0 41.0 35.0 41.0 42-43 39.17138874000172 40.0 39.0 41.0 35.0 41.0 44-45 39.12038306520708 40.0 39.0 41.0 35.0 41.0 46-47 39.02003714208564 40.0 39.0 41.0 35.0 41.0 48-49 39.02437486274542 40.0 39.0 41.0 35.0 41.0 50-51 38.93505889728184 40.0 38.5 41.0 35.0 41.0 52-53 38.79055120770333 40.0 38.0 41.0 35.0 41.0 54-55 38.61512769900102 40.0 38.0 41.0 35.0 41.0 56-57 38.49446079775134 40.0 38.0 41.0 35.0 41.0 58-59 38.36019648158548 40.0 37.0 41.0 34.0 41.0 60-61 38.15250466875182 40.0 37.0 41.0 34.0 41.0 62-63 38.016438416326366 39.5 36.5 41.0 34.0 41.0 64-65 37.76942173224894 39.0 36.0 41.0 34.0 41.0 66-67 37.554160930425525 39.0 35.5 41.0 34.0 41.0 68-69 37.305674271527536 38.5 35.0 40.0 33.5 41.0 70-71 36.86854052389694 37.5 35.0 40.0 33.0 41.0 72-73 36.60680596851334 37.0 35.0 39.5 33.0 41.0 74-75 36.23963659712513 36.5 35.0 39.0 32.5 41.0 76-77 34.40025430070883 34.5 33.0 37.0 30.0 39.0 78-79 35.407387913214954 35.0 34.5 37.5 32.0 39.0 80-81 35.315259712327865 35.0 35.0 37.0 32.0 39.0 82-83 35.015368664483546 35.0 34.5 37.0 32.0 39.0 84-85 34.74751771111151 35.0 34.0 36.0 32.0 37.5 86-87 34.53376369842324 35.0 34.0 36.0 32.0 37.0 88-89 34.34351628454251 35.0 34.0 36.0 32.0 37.0 90-91 34.25391375646089 35.0 34.0 35.0 32.0 36.5 92-93 34.115446594383975 35.0 34.0 35.0 31.5 36.0 94-95 33.95391764030348 35.0 34.0 35.0 31.0 36.0 96-97 33.971063742225624 35.0 34.0 35.0 31.0 36.0 98-99 33.989370351722926 35.0 34.0 35.0 31.0 35.5 100-101 32.7912954967705 34.5 32.0 35.0 28.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 10.0 20 16.0 21 55.0 22 220.0 23 666.0 24 1784.0 25 3889.0 26 7583.0 27 12977.0 28 20140.0 29 28809.0 30 39765.0 31 54223.0 32 73802.0 33 104612.0 34 165612.0 35 275024.0 36 563480.0 37 1284210.0 38 1932893.0 39 1000846.0 40 24010.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.17430961934755 20.414286482879746 13.194328634006425 24.21707526376628 2 14.539412946003653 21.324343624012318 41.56052011378941 22.575723316194615 3 17.937992416266667 26.80321009200648 30.514642139231967 24.744155352494886 4 11.876636725460536 18.027819886601996 40.10602307819765 29.98952030973982 5 12.563491676216001 38.430202099119676 36.30604055924332 12.700265665421009 6 29.19288986061922 38.83652492170131 19.29486673046626 12.675718487213212 7 25.87831083050875 32.84733166494805 24.155963101051707 17.11839440349149 8 24.110776921659355 36.90674148125229 21.81117932532101 17.171302271767342 9 25.467108805089456 16.427186937183315 21.735404034012628 36.37030022371461 10-11 23.8406174793766 26.929506868746667 29.619307205356005 19.610568446520727 12-13 24.626142227135684 24.519539574492043 29.586338273060264 21.26797992531201 14-15 21.67679155247236 25.92753659714108 27.218077474635948 25.177594375750605 16-17 21.32058396702124 28.91795723435558 27.869523477062202 21.891935321560975 18-19 21.193998317315295 28.410658361561293 29.430457522578347 20.96488579854507 20-21 22.160481689954544 27.707289519829402 29.079912842503404 21.052315947712653 22-23 21.851804976289806 27.68552130878635 28.853968184165662 21.608705530758186 24-25 21.51847552967166 27.72409336939152 29.12900027211702 21.628430828819802 26-27 21.659748640426542 27.993849292097195 28.814408666360315 21.53199340111595 28-29 21.441309463325698 28.22906624465785 28.839056407290283 21.49056788472617 30-31 21.788248424273245 27.973077887625376 28.79340945484452 21.445264233256857 32-33 21.503897620435637 28.1058549032528 28.76357132872382 21.626676147587737 34-35 21.57213212810019 28.2046499809748 28.823336689023193 21.399881201901817 36-37 21.680690869851375 28.08049927403146 28.69874052056548 21.540069335551685 38-39 21.46758994840493 28.19406293198807 28.8579807274159 21.480366392191097 40-41 21.7301390024077 28.00185711905638 28.762712889116976 21.505290989418942 42-43 21.695690068597155 28.12215055750792 28.559606936700504 21.62255243719442 44-45 21.766839118232745 28.394357010424017 28.321655640480518 21.51714823086272 46-47 21.74044315643025 28.237998871208557 28.103828608210822 21.917729364150368 48-49 21.84995093204993 28.249617221765433 28.14756553042816 21.752866315756478 50-51 21.658709668986166 28.37414452763996 28.036774459256797 21.93037134411708 52-53 21.79194100803052 28.342922958872652 27.89346840825623 21.9716676248406 54-55 21.8738371041373 28.31875040340285 27.876620882601603 21.93079160985825 56-57 21.928316326967405 28.349091109797946 27.860197328166276 21.86239523506837 58-59 21.853563044275166 28.453147481263088 27.95963329223347 21.733656182228273 60-61 21.903103969128825 28.429401206214433 27.833127453360067 21.834367371296672 62-63 21.865013033575856 28.350927713971565 27.83133576198707 21.952723490465516 64-65 21.79610230067247 28.396051534506928 27.852596465987883 21.955249698832727 66-67 21.893050524203208 28.36684505291481 27.770983261475816 21.969121161406164 68-69 21.91319092285253 28.33470158638264 27.83520653862464 21.916900952140193 70-71 21.868732141550833 28.11676818982337 27.85784865534135 22.15665101328445 72-73 21.967838003547914 28.202805444145962 27.97925932278389 21.850097229522234 74-75 21.896730788364856 28.290145187742382 27.81761146208428 21.995512561808482 76-77 21.803245326654277 28.286523047072652 27.7868269507158 22.123404675557268 78-79 21.889370452189276 28.253154093323037 27.780430796567778 22.07704465791991 80-81 21.78931671948359 28.27468973681983 27.839329880231396 22.096663663465186 82-83 21.92786582864185 28.200542904960855 27.993562003653118 21.878029262744178 84-85 22.160230186006626 28.11718837033258 27.810789689662403 21.911791753998394 86-87 21.791824008081047 28.242793911675673 27.869543886037228 22.09583819420605 88-89 21.98999859896006 28.167706797579967 27.860270592147273 21.982024011312696 90-91 22.063745145024637 28.156563830262016 27.900063136159858 21.87962788855349 92-93 22.006319129194946 28.157579599666395 27.90782736376863 21.92827390737003 94-95 21.824733587816485 28.323654086425552 27.893305003291918 21.95830732246604 96-97 21.81411709824254 28.268762616670408 27.997556411499367 21.91956387358768 98-99 22.145688371408824 28.864989692715987 27.9723365796744 21.01698535620079 100-101 26.058371389296596 35.869851451110485 28.627655488810678 9.444121670782247 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 664.0 1 676.5 2 1256.5 3 1931.5 4 2866.0 5 5043.0 6 6694.5 7 7449.5 8 7501.5 9 6764.0 10 5827.5 11 5096.0 12 5790.0 13 8212.5 14 13326.5 15 19938.5 16 24963.5 17 27926.0 18 28696.5 19 27498.5 20 25724.0 21 24449.5 22 25123.5 23 28688.0 24 34858.5 25 43899.5 26 55920.5 27 69128.0 28 82440.5 29 96890.5 30 110083.5 31 122150.5 32 135959.0 33 149728.0 34 163036.0 35 176582.5 36 189609.5 37 201499.5 38 208952.0 39 213027.5 40 220013.0 41 225434.0 42 227756.0 43 232628.0 44 237949.5 45 242854.5 46 245868.0 47 247664.5 48 246705.0 49 240525.5 50 232756.5 51 223613.5 52 211741.0 53 200060.0 54 186810.5 55 169655.5 56 152787.5 57 134834.5 58 116513.5 59 99788.5 60 82900.0 61 65903.5 62 50718.5 63 38379.0 64 28448.0 65 20800.0 66 15579.5 67 12009.5 68 9100.5 69 6763.5 70 5059.0 71 3878.0 72 2933.5 73 2150.5 74 1509.5 75 995.0 76 663.5 77 419.5 78 262.5 79 168.0 80 113.5 81 87.5 82 75.5 83 56.0 84 40.5 85 26.5 86 15.5 87 11.0 88 6.0 89 3.0 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0015371880647713854 3 4.4685699557307714E-4 4 0.0 5 0.0 6 5.183541148647694E-4 7 0.0 8 0.0 9 5.3622839468769254E-5 10-11 2.6811419734384625E-4 12-13 4.200455758386925E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 6.259439458254457E-5 28-29 8.947941324769557E-6 30-31 4.481459708226499E-5 32-33 2.4271578467046658E-4 34-35 9.023096419906034E-6 36-37 5.443033438822345E-4 38-39 6.401936238178368E-5 40-41 4.615104869027939E-5 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 6.828361619496182E-5 52-53 0.0 54-55 5.17946652291655E-4 56-57 3.0215922985655493E-5 58-59 0.0 60-61 7.9362363604956E-4 62-63 1.0423107278372427E-5 64-65 0.0 66-67 2.13142675788889E-5 68-69 0.0 70-71 0.0 72-73 7.735918721575333E-5 74-75 2.2358929686979458E-5 76-77 1.1312250465895035E-5 78-79 4.579651532025102E-5 80-81 0.0 82-83 0.0 84-85 1.1889280363260317E-5 86-87 4.8147083562633815E-4 88-89 9.754837759367419E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 96.0 20-21 363.0 22-23 736.0 24-25 1371.0 26-27 2840.0 28-29 6893.0 30-31 15799.0 32-33 19408.0 34-35 26166.0 36-37 41071.0 38-39 50750.0 40-41 49055.0 42-43 54036.0 44-45 63390.0 46-47 63303.0 48-49 59737.0 50-51 54472.0 52-53 51713.0 54-55 54963.0 56-57 56957.0 58-59 55955.0 60-61 55303.0 62-63 51897.0 64-65 52895.0 66-67 55520.0 68-69 56379.0 70-71 56158.0 72-73 52099.0 74-75 52394.0 76-77 52224.0 78-79 54725.0 80-81 55848.0 82-83 52047.0 84-85 51004.0 86-87 52886.0 88-89 55311.0 90-91 58213.0 92-93 58668.0 94-95 62673.0 96-97 96240.0 98-99 435570.0 100-101 3347503.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.63757937068273 #Duplication Level Percentage of deduplicated Percentage of total 1 88.61946368456593 74.11917427705218 2 7.634688132879348 12.770936693682122 3 2.1089119670713083 5.291528760951275 4 0.8034979310402904 2.688104879262466 5 0.35654334908072904 1.4910211328914256 6 0.1873770130930579 0.9403055882887251 7 0.09725838890857877 0.5694119355264191 8 0.05824417826458865 0.38971216659877816 9 0.035736514035108316 0.26900239761386 >10 0.0963079642226842 1.121066387486111 >50 8.35201139279752E-4 0.04794266929446639 >100 8.979273394804525E-4 0.16089583746235148 >500 1.6982027361865995E-4 0.07272118567309795 >1k 6.792808600486071E-5 0.06817608821676065 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 3.574855964584617E-5 0.0 0.0 0.0 5 0.0 3.574855964584617E-5 0.0 0.0 0.0 6 0.0 3.574855964584617E-5 0.0 0.0 0.0 7 0.0 3.574855964584617E-5 0.0 1.0724567893753851E-4 0.0 8 0.0 3.574855964584617E-5 0.0 1.6086851840630775E-4 0.0 9 0.0 1.251199587604616E-4 0.0 3.0386275698969246E-4 0.0 10-11 0.0 1.4299423858338468E-4 0.0 3.574855964584617E-4 0.0 12-13 0.0 1.4299423858338468E-4 0.0 3.8429701619284635E-4 0.0 14-15 0.0 1.6086851840630775E-4 0.0 4.647312753960002E-4 0.0 16-17 0.0 1.6086851840630775E-4 0.0 5.183541148647694E-4 0.0 18-19 0.0 1.6086851840630775E-4 0.0 5.362283946876925E-4 0.0 20-21 0.0 1.7874279822923086E-4 1.7874279822923085E-5 6.43474073625231E-4 0.0 22-23 0.0 1.7874279822923086E-4 1.7874279822923085E-5 6.43474073625231E-4 0.0 24-25 0.0 2.2342849778653857E-4 1.7874279822923085E-5 6.702854933596157E-4 0.0 26-27 0.0 2.323656376980001E-4 1.7874279822923085E-5 7.41782612651308E-4 0.0 28-29 0.0 2.323656376980001E-4 1.7874279822923085E-5 0.0010009596700836928 0.0 30-31 0.0 2.502399175209232E-4 1.7874279822923085E-5 0.0022164106980424626 0.0 32-33 0.0 2.502399175209232E-4 1.7874279822923085E-5 0.004432821396084925 0.0 34-35 0.0 2.8598847716676935E-4 1.7874279822923085E-5 0.007113963369523388 0.0 36-37 0.0 3.217370368126155E-4 1.7874279822923085E-5 0.011305481987998852 0.0 38-39 0.0 3.396113166355386E-4 1.7874279822923085E-5 0.017632977045313622 0.0 40-41 0.0 3.396113166355386E-4 1.7874279822923085E-5 0.02490780893324332 0.0 42-43 0.0 3.396113166355386E-4 1.7874279822923085E-5 0.03169109812604263 0.0 44-45 0.0 3.5748559645846167E-4 1.7874279822923085E-5 0.038751438656097245 0.0 46-47 0.0 3.7535987628138477E-4 1.7874279822923085E-5 0.04644631611986563 0.0 48-49 1.7874279822923085E-5 3.7535987628138477E-4 1.7874279822923085E-5 0.054346747801597636 0.0 50-51 1.7874279822923085E-5 4.379198556616156E-4 1.7874279822923085E-5 0.062479545121027644 0.0 52-53 1.7874279822923085E-5 4.4685699557307714E-4 1.7874279822923085E-5 0.07008505118568142 0.0 54-55 1.7874279822923085E-5 4.5579413548453866E-4 1.7874279822923085E-5 0.07778886578936126 0.0 56-57 1.7874279822923085E-5 4.647312753960002E-4 1.7874279822923085E-5 0.08606465734737465 0.0 58-59 1.7874279822923085E-5 4.647312753960002E-4 1.7874279822923085E-5 0.09395615188919519 0.0 60-61 1.7874279822923085E-5 4.647312753960002E-4 1.7874279822923085E-5 0.10140972657535413 0.0 62-63 1.7874279822923085E-5 4.647312753960002E-4 1.7874279822923085E-5 0.1084790042453202 0.0 64-65 1.7874279822923085E-5 5.45165534599154E-4 1.7874279822923085E-5 0.11460988222458282 0.0 66-67 1.7874279822923085E-5 5.541026745106157E-4 1.7874279822923085E-5 0.12039221174729844 0.0 68-69 1.7874279822923085E-5 5.809140942450002E-4 1.7874279822923085E-5 0.12714868952036334 0.0 70-71 1.7874279822923085E-5 5.987883740679234E-4 1.7874279822923085E-5 0.1335566188368813 0.0 72-73 1.7874279822923085E-5 6.077255139793849E-4 1.7874279822923085E-5 0.1388742170842009 0.0 74-75 1.7874279822923085E-5 6.434740736252311E-4 1.7874279822923085E-5 0.14357515267762969 0.0 76-77 1.7874279822923085E-5 6.702854933596157E-4 1.7874279822923085E-5 0.1477041113167249 0.0 78-79 1.7874279822923085E-5 6.792226332710772E-4 1.7874279822923085E-5 0.15162751573785654 0.0 80-81 1.7874279822923085E-5 6.792226332710772E-4 1.7874279822923085E-5 0.1533523837407686 0.0 82-83 2.6811419734384627E-5 6.792226332710772E-4 1.7874279822923085E-5 0.15401373209421676 0.0 84-85 3.574855964584617E-5 6.792226332710772E-4 1.7874279822923085E-5 0.15453208620908154 0.0 86-87 3.574855964584617E-5 6.792226332710772E-4 1.7874279822923085E-5 0.15469295472748784 0.0 88-89 3.574855964584617E-5 7.149711929169234E-4 1.7874279822923085E-5 0.1547018918673993 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6755 0.0 38.604702 1 GTATCAA 11400 0.0 33.9836 1 ATCAACG 13080 0.0 28.88571 3 CAACGCA 13150 0.0 28.731945 5 TCAACGC 13300 0.0 28.501863 4 AACGCAG 13645 0.0 27.87306 6 TATCAAC 14110 0.0 27.161396 2 ACGCAGA 15260 0.0 24.841295 7 CGCAGAG 15540 0.0 24.286482 8 TACATGG 15320 0.0 22.079466 2 GTACATG 16020 0.0 21.894794 1 ACATGGG 15435 0.0 21.266846 3 CATGGGG 10345 0.0 20.415546 4 GCAGAGT 18765 0.0 20.023748 9 GAGTACT 10590 0.0 18.566563 12-13 AGAGTAC 16815 0.0 17.812277 10-11 CAGAGTA 18645 0.0 16.93535 10-11 TATACCG 430 1.8189894E-12 16.468876 5 CTGTGCG 1630 0.0 16.3561 9 GGCGTCG 690 0.0 16.300543 8 >>END_MODULE