##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140101_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5477393 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.74671618414089 34.0 31.0 34.0 31.0 34.0 2 32.95223128959343 34.0 33.0 34.0 31.0 34.0 3 33.06046361836735 34.0 33.0 34.0 31.0 34.0 4 36.43992132753666 37.0 37.0 37.0 35.0 37.0 5 36.303482149263345 37.0 37.0 37.0 35.0 37.0 6 36.32882504505337 37.0 37.0 37.0 35.0 37.0 7 36.331409303659605 37.0 37.0 37.0 35.0 37.0 8 36.34065950717796 37.0 37.0 37.0 35.0 37.0 9 38.24414297093526 39.0 39.0 39.0 37.0 39.0 10-11 38.14847218375603 39.0 38.5 39.0 37.0 39.0 12-13 38.13371178588062 39.0 38.5 39.0 37.0 39.0 14-15 39.629091065767966 41.0 39.5 41.0 37.0 41.0 16-17 39.59958953100499 41.0 39.0 41.0 37.0 41.0 18-19 39.638914899843776 41.0 39.5 41.0 37.0 41.0 20-21 39.657070848914316 41.0 40.0 41.0 37.0 41.0 22-23 39.60318068867349 41.0 39.5 41.0 37.0 41.0 24-25 39.58060545224446 41.0 39.0 41.0 37.0 41.0 26-27 39.46280743937045 41.0 39.0 41.0 37.0 41.0 28-29 39.40068591486819 40.5 39.0 41.0 37.0 41.0 30-31 39.34866109092417 40.0 39.0 41.0 36.0 41.0 32-33 39.25805915835074 40.0 39.0 41.0 36.0 41.0 34-35 39.20674422873871 40.0 39.0 41.0 36.0 41.0 36-37 39.171576335124996 40.0 39.0 41.0 35.5 41.0 38-39 39.09502883003981 40.0 39.0 41.0 35.0 41.0 40-41 39.04476925339195 40.0 39.0 41.0 35.0 41.0 42-43 39.03812679498178 40.0 39.0 41.0 35.0 41.0 44-45 38.97377943183921 40.0 38.0 41.0 35.0 41.0 46-47 38.86382668040552 40.0 38.0 41.0 35.0 41.0 48-49 38.8545648897929 40.0 38.0 41.0 35.0 41.0 50-51 38.714662258993044 40.0 38.0 41.0 35.0 41.0 52-53 38.551961912941564 40.0 38.0 41.0 35.0 41.0 54-55 38.337908261848625 40.0 37.5 41.0 34.0 41.0 56-57 38.16124503491706 40.0 37.0 41.0 34.0 41.0 58-59 37.986062337400185 39.5 36.5 41.0 34.0 41.0 60-61 37.71687087978381 39.0 36.0 41.0 33.5 41.0 62-63 37.53854389708526 39.0 35.5 41.0 33.0 41.0 64-65 37.27124607494241 38.5 35.0 40.0 33.0 41.0 66-67 37.031872246464474 38.0 35.0 40.0 33.0 41.0 68-69 36.767835547215896 37.0 35.0 40.0 33.0 41.0 70-71 36.316234341501264 37.0 35.0 39.0 32.5 41.0 72-73 36.05273210456231 36.0 35.0 39.0 32.0 41.0 74-75 35.69752520965863 36.0 35.0 38.5 32.0 40.0 76-77 33.93460284484899 34.5 32.0 36.5 29.0 39.0 78-79 34.942637922975024 35.0 34.0 37.0 31.5 39.0 80-81 34.88592208388806 35.0 34.0 36.5 32.0 39.0 82-83 34.63767492794533 35.0 34.0 36.0 32.0 37.5 84-85 34.41546844091444 35.0 34.0 36.0 31.0 37.0 86-87 34.247325589344655 35.0 34.0 35.5 31.0 37.0 88-89 34.09587210358727 35.0 34.0 35.0 31.0 36.0 90-91 34.048685051406295 35.0 34.0 35.0 31.0 36.0 92-93 33.94312957003682 35.0 34.0 35.0 31.0 36.0 94-95 33.80299997575235 35.0 34.0 35.0 31.0 36.0 96-97 33.837552585259346 35.0 34.0 35.0 31.0 35.0 98-99 33.87685645415857 35.0 34.0 35.0 31.0 35.0 100-101 32.65216730314023 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 7.0 20 25.0 21 61.0 22 234.0 23 816.0 24 2151.0 25 4800.0 26 9049.0 27 14755.0 28 22625.0 29 32368.0 30 43367.0 31 57830.0 32 78372.0 33 112020.0 34 179061.0 35 304589.0 36 634658.0 37 1387562.0 38 1737109.0 39 836022.0 40 19911.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.487950015637 19.83085749005047 12.747652030811008 24.933540463501526 2 15.41447558559215 20.575668497671945 40.348097308190376 23.66175860854553 3 18.360123891688794 26.019755849756226 30.17586010791685 25.444260150638126 4 12.48294581016918 17.504641350365034 37.81171079015145 32.20070204931433 5 13.199290246290527 37.878950807437036 35.59030728669643 13.331451659576008 6 30.70348879879679 37.338914126117004 18.255023681125095 13.702573393961103 7 27.064481223092812 31.98386531694914 22.66591058921644 18.28574287074161 8 25.41141378754455 35.620303308526516 21.090106187377827 17.878176716551103 9 25.918794930141935 15.80011070962239 20.34008155706219 37.94101280317348 10-11 24.753632121062306 26.060954712272917 28.53889214876169 20.64652101790309 12-13 25.49749866564769 23.346386723644066 28.42874686448887 22.727367746219382 14-15 22.71349709615505 24.759689509224554 25.54376689786546 26.983046496754937 16-17 22.708595129106126 28.14564337450316 26.13972559573505 23.006035900655657 18-19 22.69951234099872 27.107996450136042 27.65237951704397 22.540111691821274 20-21 23.208446947324795 26.40293614764357 27.431080771446233 22.957536133585407 22-23 22.949499497607817 26.663595528554374 27.3235706928703 23.063334280967506 24-25 22.851757475960042 26.838309180230485 27.58836366863708 22.721569675172397 26-27 22.72236059392973 26.992200950426394 27.566968709727213 22.718469745916664 28-29 22.25365447118765 26.672098403027466 27.64371441192786 23.430532713857026 30-31 22.63950432486827 26.526414264478444 27.691217125080943 23.142864285572347 32-33 22.44657661340327 26.880412266963067 27.714554732389317 22.95845638724434 34-35 22.45689489013479 27.34471674786215 27.856254757511913 22.342133604491146 36-37 22.74004737923355 26.912621456469505 27.275139461570614 23.072191702726332 38-39 22.773896780044776 26.710899718384546 27.58259689284626 22.932606608724416 40-41 22.739871196071835 26.575441099702218 27.862630177951353 22.82205752627459 42-43 23.04233001587974 26.482107672779243 27.69297855156833 22.78258375977268 44-45 22.627885228008797 27.15183014262336 27.354727560972197 22.865557068395646 46-47 23.182002075291805 26.567095907458516 26.88094935465381 23.369952662595868 48-49 23.063463828786187 26.540471522351762 27.06716286575252 23.328901783109533 50-51 22.60722967388423 26.85249214371619 27.23291063610487 23.307367546294717 52-53 22.732380391343384 27.042426594755074 27.32552580487283 22.899667209028706 54-55 22.780626324201915 26.945150435073696 26.94588795228755 23.328335288436836 56-57 23.253605929171226 27.098937366994413 26.6219181784834 23.02553852535096 58-59 22.674633753684777 27.397956649099864 27.274278263842174 22.65313133337319 60-61 23.211570884629378 27.867706594876402 26.259087663496807 22.661634856997416 62-63 22.80282796543598 28.032136955873987 26.344177479210117 22.820857599479915 64-65 22.677683393026708 27.78620164707278 26.494119853117652 23.04199510678286 66-67 22.879075356597376 27.50844788466848 26.428871290085134 23.18360546864901 68-69 22.94394132832967 27.32998446669439 26.582256451508695 23.14381775346724 70-71 23.00573426965715 26.944707392266455 26.60564225170649 23.443916086369903 72-73 23.06235144195197 27.02444927931651 26.639151887105477 23.27404739162604 74-75 22.8229406422648 27.145634339818674 26.723612464593533 23.307812553322993 76-77 23.038356548826478 27.10354358416101 26.474820903822767 23.38327896318975 78-79 23.05144112942594 27.0710864084025 26.486141341734015 23.391331120437545 80-81 22.972855104967195 27.112066375818667 26.527775498866664 23.387303020347474 82-83 23.244015592927045 26.971794351662275 26.66487633241101 23.119313722999667 84-85 23.29180545263175 26.956401749556075 26.444565155769823 23.30722764204236 86-87 22.933918216389504 27.195146612220196 26.638083296983833 23.232851874406467 88-89 23.173961528647773 26.90132766883549 26.633861637634247 23.290849164882495 90-91 23.206560863202917 26.848323922432684 26.63001591473451 23.31509929962989 92-93 23.272837759481707 26.96141653605464 26.59472547532445 23.17102022913921 94-95 23.013315293775367 27.048249072774745 26.682677321235015 23.255758312214876 96-97 22.899427271630795 27.006436474114686 26.791659853777528 23.30247640047699 98-99 23.332878504499618 27.564973892245543 26.75300302910209 22.349144574152742 100-101 27.8903034293443 34.65967979392855 27.108698652782547 10.34131812394461 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 610.0 1 628.5 2 1202.0 3 1853.0 4 2724.0 5 4757.5 6 6259.5 7 6957.0 8 7100.0 9 6422.0 10 5434.5 11 4693.0 12 5202.0 13 7187.5 14 11680.5 15 17436.5 16 21687.0 17 23806.0 18 23751.5 19 22219.5 20 20264.5 21 18683.5 22 18414.5 23 20461.5 24 24949.0 25 31672.0 26 40803.0 27 51088.5 28 60444.5 29 70390.5 30 80034.5 31 87745.5 32 97255.0 33 108140.5 34 119408.0 35 132184.0 36 146836.5 37 159585.5 38 167860.0 39 173389.5 40 179114.5 41 185776.0 42 192122.0 43 200774.0 44 212661.5 45 228483.0 46 245539.0 47 262194.0 48 270181.5 49 271096.0 50 273648.5 51 270546.5 52 259404.0 53 248373.5 54 236326.0 55 220235.5 56 205032.5 57 189365.5 58 169486.0 59 145799.5 60 120154.5 61 95698.0 62 75104.0 63 57829.5 64 43671.5 65 31937.0 66 23474.0 67 17861.5 68 13622.0 69 10233.0 70 7494.0 71 5511.5 72 4016.5 73 2822.5 74 2029.0 75 1442.5 76 929.0 77 585.5 78 403.5 79 282.0 80 199.5 81 147.0 82 107.5 83 67.0 84 43.0 85 28.0 86 21.0 87 17.0 88 10.0 89 4.5 90 3.0 91 3.0 92 3.0 93 2.5 94 1.5 95 1.0 96 0.5 97 0.0 98 1.0 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0013510076782878278 3 5.111920944872862E-4 4 0.0 5 0.0 6 6.389901181091078E-4 7 0.0 8 0.0 9 1.8256860517403078E-5 10-11 2.738529077610462E-4 12-13 3.0123819853715075E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 5.4800646209220104E-5 28-29 9.140233112505301E-6 30-31 5.4943932921516344E-5 32-33 1.9290529241181313E-4 34-35 1.8444433377784415E-5 36-37 5.379126891655759E-4 38-39 2.1518027616423754E-4 40-41 8.502026930453703E-5 42-43 0.0 44-45 9.646163296425827E-6 46-47 3.907901317285146E-5 48-49 2.967775889392971E-5 50-51 2.002940115795977E-5 52-53 0.0 54-55 7.579980574763294E-4 56-57 8.303921880024522E-5 58-59 0.0 60-61 9.181530603856456E-4 62-63 1.0835115438945153E-5 64-65 0.0 66-67 5.5959195450024963E-5 68-69 0.0 70-71 0.0 72-73 1.05297973961683E-4 74-75 2.3699102917857248E-5 76-77 2.400712243308345E-5 78-79 6.082276659409295E-5 80-81 0.0 82-83 0.0 84-85 0.0 86-87 5.527921660865349E-4 88-89 1.3038202323955258E-4 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 87.0 20-21 346.0 22-23 764.0 24-25 1317.0 26-27 2988.0 28-29 7882.0 30-31 16332.0 32-33 20182.0 34-35 26364.0 36-37 43090.0 38-39 52842.0 40-41 50756.0 42-43 55413.0 44-45 64412.0 46-47 64526.0 48-49 62700.0 50-51 57675.0 52-53 53554.0 54-55 61795.0 56-57 66979.0 58-59 66451.0 60-61 69645.0 62-63 70064.0 64-65 73389.0 66-67 75645.0 68-69 65186.0 70-71 59793.0 72-73 54510.0 74-75 53824.0 76-77 54400.0 78-79 57081.0 80-81 58226.0 82-83 53714.0 84-85 52758.0 86-87 53776.0 88-89 57158.0 90-91 59595.0 92-93 59891.0 94-95 63330.0 96-97 96412.0 98-99 422458.0 100-101 3090083.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.79651358428694 #Duplication Level Percentage of deduplicated Percentage of total 1 88.3154427808607 73.1221075790785 2 7.775740761628719 12.876084511961716 3 2.0937979285474393 5.200775059011897 4 0.8436291679130653 2.793982154448592 5 0.3935334040455016 1.6291596916962021 6 0.2083464897097537 1.0350217779295272 7 0.11895478056104819 0.6894328773247088 8 0.07216491124783657 0.47800024435522886 9 0.04715689389225151 0.35139837651683214 >10 0.12868219919126533 1.540623136783854 >50 0.0014670268545422952 0.07706752584496411 >100 0.0010836555478069194 0.20634706504790798 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.8256860517403078E-5 0.0 0.0 0.0 5 0.0 1.8256860517403078E-5 0.0 0.0 0.0 6 0.0 1.8256860517403078E-5 0.0 0.0 0.0 7 0.0 1.8256860517403078E-5 0.0 0.0 0.0 8 0.0 1.8256860517403078E-5 0.0 0.0 0.0 9 0.0 1.2779802362182155E-4 0.0 0.0 0.0 10-11 0.0 1.2779802362182155E-4 0.0 9.128430258701539E-6 0.0 12-13 0.0 1.2779802362182155E-4 0.0 3.6513721034806156E-5 0.0 14-15 0.0 1.825686051740308E-4 0.0 4.564215129350769E-5 0.0 16-17 0.0 1.825686051740308E-4 0.0 1.0954116310441848E-4 0.0 18-19 0.0 1.9169703543273233E-4 0.0 1.369264538805231E-4 0.0 20-21 0.0 2.0082546569143386E-4 0.0 1.643117446566277E-4 0.0 22-23 0.0 2.1908232620883693E-4 0.0 2.099538959501354E-4 0.0 24-25 0.0 2.2821075646753847E-4 0.0 2.9210976827844925E-4 0.0 26-27 0.0 2.4646761698494154E-4 0.0 4.8380680371118163E-4 0.0 28-29 0.0 2.555960472436431E-4 0.0 0.0014422919808748432 0.0 30-31 0.0 3.103666287958523E-4 0.0 0.004454673966246351 0.0 32-33 0.0 3.286234893132554E-4 0.0 0.008589852873438148 0.0 34-35 0.0 4.290362221589723E-4 0.0 0.0142403512035744 0.0 36-37 0.0 5.294489550046892E-4 0.0 0.021753049306485767 0.0 38-39 0.0 5.477058155220923E-4 0.0 0.037663903247402555 0.0 40-41 0.0 5.842195365568985E-4 0.0 0.07446060562022846 0.0 42-43 0.0 5.842195365568985E-4 0.0 0.08868269996328546 0.0 44-45 0.0 6.116048273330031E-4 0.0 0.10731382612129531 0.0 46-47 0.0 6.389901181091078E-4 0.0 0.12767935402845842 0.0 48-49 0.0 6.389901181091078E-4 0.0 0.1469494703045774 0.0 50-51 0.0 7.1201756017872E-4 0.0 0.16737889722355143 0.0 52-53 0.0 7.1201756017872E-4 0.0 0.19293850194791573 0.0 54-55 0.0 7.1201756017872E-4 0.0 0.24034244028135282 0.0 56-57 0.0 7.1201756017872E-4 0.0 0.29167160362603156 0.0 58-59 0.0 7.1201756017872E-4 0.0 0.34311943656407345 0.0 60-61 0.0 7.1201756017872E-4 0.0 0.37644733543859277 0.0 62-63 0.0 7.394028509548247E-4 0.0 0.39247685897287266 0.0 64-65 0.0 7.485312812135262E-4 0.0 0.4074748698879193 0.0 66-67 0.0 7.576597114722277E-4 0.0 0.41605559433109873 0.0 68-69 0.0 7.850450022483324E-4 0.0 0.4239151727838408 0.0 70-71 0.0 8.033018627657355E-4 0.0 0.43199383356279164 0.0 72-73 0.0 8.033018627657355E-4 0.0 0.4376625887534453 0.0 74-75 0.0 8.12430293024437E-4 0.0 0.44233634504590047 0.0 76-77 0.0 8.215587232831386E-4 0.0 0.4462980837781769 0.0 78-79 0.0 8.215587232831386E-4 0.0 0.4503876205340752 0.0 80-81 0.0 8.215587232831386E-4 0.0 0.4520489948411589 0.0 82-83 0.0 8.306871535418401E-4 0.0 0.45273362711056153 0.0 84-85 0.0 8.945861653527509E-4 0.0 0.4533726172286706 0.0 86-87 0.0 9.128430258701539E-4 0.0 0.4535643142641034 0.0 88-89 0.0 9.493567469049601E-4 0.0 0.45357344269436206 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6050 0.0 40.000492 1 CTTATAC 8535 0.0 34.11138 1 GTATCAA 10545 0.0 33.705936 1 TATACAC 9420 0.0 32.210728 3 TTATACA 10175 0.0 29.01577 2 ATCAACG 12330 0.0 27.896484 3 CAACGCA 12460 0.0 27.605932 5 TCAACGC 12650 0.0 27.22367 4 TATCAAC 13290 0.0 26.405176 2 AACGCAG 13070 0.0 26.317757 6 TACACAT 12550 0.0 24.14511 5 ACGCAGA 14630 0.0 23.48307 7 ATACACA 13915 0.0 22.747698 4 GTACATG 16960 0.0 22.502113 1 TACATGG 16720 0.0 22.433264 2 ACACATC 13060 0.0 22.230448 6 ACATGGG 16570 0.0 22.191523 3 CGCAGAG 15570 0.0 22.012737 8 CACATCT 14860 0.0 19.509748 7 CATGGGG 12550 0.0 19.120316 4 >>END_MODULE