##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140100_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6549236 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.73585926663812 34.0 31.0 34.0 31.0 34.0 2 32.94699305384628 34.0 31.0 34.0 31.0 34.0 3 33.05666325049212 34.0 33.0 34.0 31.0 34.0 4 36.44263056026688 37.0 37.0 37.0 35.0 37.0 5 36.29452519347295 37.0 37.0 37.0 35.0 37.0 6 36.318350720603135 37.0 37.0 37.0 35.0 37.0 7 36.32751621715877 37.0 37.0 37.0 35.0 37.0 8 36.33706053652671 37.0 37.0 37.0 35.0 37.0 9 38.2451146973479 39.0 39.0 39.0 37.0 39.0 10-11 38.149203968218586 39.0 38.5 39.0 37.0 39.0 12-13 38.13778798015524 39.0 38.5 39.0 37.0 39.0 14-15 39.645541479952776 41.0 40.0 41.0 37.0 41.0 16-17 39.62251658055993 41.0 39.5 41.0 37.0 41.0 18-19 39.65343461435807 41.0 40.0 41.0 37.5 41.0 20-21 39.66759313031805 41.0 40.0 41.0 37.5 41.0 22-23 39.62039819005004 41.0 40.0 41.0 37.0 41.0 24-25 39.60215081930994 41.0 39.5 41.0 37.0 41.0 26-27 39.49172737709442 41.0 39.0 41.0 37.0 41.0 28-29 39.42323838009279 40.5 39.0 41.0 37.0 41.0 30-31 39.3652550376992 40.0 39.0 41.0 36.5 41.0 32-33 39.28380546214025 40.0 39.0 41.0 36.0 41.0 34-35 39.24597407449406 40.0 39.0 41.0 36.0 41.0 36-37 39.20893712665277 40.0 39.0 41.0 36.0 41.0 38-39 39.14490166214759 40.0 39.0 41.0 35.0 41.0 40-41 39.075368212502106 40.0 39.0 41.0 35.0 41.0 42-43 39.064673021663566 40.0 39.0 41.0 35.0 41.0 44-45 39.003160696650546 40.0 39.0 41.0 35.0 41.0 46-47 38.88873405647462 40.0 38.0 41.0 35.0 41.0 48-49 38.87602758201217 40.0 38.0 41.0 35.0 41.0 50-51 38.76175687042319 40.0 38.0 41.0 35.0 41.0 52-53 38.588648452382586 40.0 38.0 41.0 35.0 41.0 54-55 38.387977780813834 40.0 37.5 41.0 34.5 41.0 56-57 38.23188645920406 40.0 37.0 41.0 34.0 41.0 58-59 38.054952322444535 39.5 37.0 41.0 34.0 41.0 60-61 37.81248450979515 39.0 36.0 41.0 34.0 41.0 62-63 37.632541593851265 39.0 36.0 41.0 34.0 41.0 64-65 37.33594587328341 39.0 35.0 40.0 33.0 41.0 66-67 37.07639539603424 38.0 35.0 40.0 33.0 41.0 68-69 36.79225439463431 37.0 35.0 40.0 33.0 41.0 70-71 36.33082616354503 37.0 35.0 39.0 32.5 41.0 72-73 36.05897541507022 36.0 35.0 39.0 32.0 41.0 74-75 35.70303848127776 36.0 35.0 39.0 32.0 40.0 76-77 33.92884841108558 34.5 32.0 36.5 29.0 39.0 78-79 34.9280005902174 35.0 34.0 37.0 31.0 39.0 80-81 34.870647168199255 35.0 34.0 36.5 32.0 39.0 82-83 34.62323263323664 35.0 34.0 36.0 31.5 37.5 84-85 34.40263036725073 35.0 34.0 36.0 31.0 37.0 86-87 34.23159776496732 35.0 34.0 35.5 31.0 37.0 88-89 34.084523886186375 35.0 34.0 35.0 31.0 36.0 90-91 34.03284728542445 35.0 34.0 35.0 31.0 36.0 92-93 33.92650246378966 35.0 34.0 35.0 31.0 36.0 94-95 33.78746506862025 35.0 34.0 35.0 31.0 36.0 96-97 33.8199263400975 35.0 34.0 35.0 31.0 35.0 98-99 33.85775108427781 35.0 34.0 35.0 31.0 35.0 100-101 32.63674973523466 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 8.0 20 35.0 21 74.0 22 260.0 23 887.0 24 2467.0 25 5623.0 26 10460.0 27 17525.0 28 26691.0 29 38370.0 30 53039.0 31 71061.0 32 96355.0 33 135804.0 34 217047.0 35 368191.0 36 765269.0 37 1684673.0 38 2092143.0 39 944254.0 40 18998.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.5161597474881 19.431289390090694 12.637122864407392 24.415427998013815 2 15.846708258940534 20.612774240498705 39.63127638421757 23.909241116343185 3 18.877674808568425 25.413336301631634 29.49315848468372 26.215830405116225 4 12.756098573940534 16.891435886567532 38.227497069887235 32.124968469604696 5 13.501193116265775 37.62962580673532 35.41405440268147 13.455126674317434 6 31.421071701833096 37.1105988510642 18.111702651518332 13.35662679558437 7 27.748595408685837 31.678046111027303 22.77743541384064 17.795923066446225 8 25.667833622120202 35.514737902253025 20.659905979873074 18.157522495753703 9 26.136216846122768 15.954232204865484 20.58602578561096 37.32352516340079 10-11 25.06275183377051 26.08087447480315 28.446701442356947 20.40967224906939 12-13 25.640183887771535 23.408083293074036 28.577896088872983 22.373836730281443 14-15 22.701296761942917 24.744359494756335 25.901540271262174 26.65280347203857 16-17 22.54755363831751 28.01741302344273 26.528697393100508 22.90633594513925 18-19 22.670560352383088 27.301161540063607 28.031315408392675 21.996962699160637 20-21 23.40469342300381 26.588546018863447 27.690413925574003 22.31634663255874 22-23 23.13851371239307 26.53684376011919 27.652433328159127 22.67220919932861 24-25 22.874092458071228 26.6523839978618 27.681698341940226 22.791825202126745 26-27 22.83644028186763 26.891153822386542 27.672642702688126 22.599763193057694 28-29 22.729489009529598 26.982964436469675 27.602114970467227 22.6854315835335 30-31 22.97146933793916 26.804044148975958 27.471949043349277 22.752537469735607 32-33 22.854878775388404 26.89564286327904 27.44718761158162 22.802290749750938 34-35 22.829234570351122 27.1504244640689 27.444133986760693 22.57620697881928 36-37 22.913935053199495 26.8461113488746 27.426563081613025 22.813390516312882 38-39 22.85947844867906 26.952482247537198 27.47403824946857 22.714001054315176 40-41 22.935772235647864 26.819638707021028 27.62522440337741 22.619364653953703 42-43 22.978968889236064 26.824926715875748 27.284509427824165 22.91159496706402 44-45 22.975930346537137 27.206571975731354 27.0201490966123 22.79734858111921 46-47 22.97245952282918 27.12099596536028 26.94773410484224 22.9588104069683 48-49 23.00958359801791 26.978847515847242 26.923976301212623 23.087592584922227 50-51 22.885916614149725 27.178214866164712 26.86244983249859 23.073418687186972 52-53 22.94385695565922 27.250900078606378 26.675611963413065 23.12963100232134 54-55 23.117054262319918 26.989742610611472 26.719030366112488 23.17417276095612 56-57 23.171749884231 27.001264372780025 26.90617772454803 22.920808018440944 58-59 23.050712333404224 26.999886616147574 26.970628220056003 22.9787728303922 60-61 23.144025925450336 27.191885980641985 26.55304804934569 23.111040044561992 62-63 23.14167233085736 27.267979980689578 26.577125583730005 23.01322210472306 64-65 22.956652961187093 27.104593130659786 26.726802389138314 23.2119515190148 66-67 23.0872528229535 27.092680326528708 26.548917712296216 23.271149138221574 68-69 23.041608996286662 27.09727542203013 26.705814856865285 23.155300724817916 70-71 23.11812212697908 26.85762847967225 26.643743277040805 23.380506116307863 72-73 23.089948721368618 27.015984156712474 26.643158496940778 23.25090862497813 74-75 22.79585861734838 27.151363828273407 26.787135709123728 23.265641845254486 76-77 23.11668526218337 27.043985560181195 26.56787133608189 23.27145784155355 78-79 23.073836054307463 27.07664902628527 26.559567144386463 23.289947775020806 80-81 23.014956718703182 27.14197553408017 26.600198469966983 23.242869277249664 82-83 23.31868363257568 26.967173926680843 26.78421753309405 22.929924907649422 84-85 23.300405559282318 26.929440211071537 26.619880162449093 23.15027406719705 86-87 22.99504356057018 27.10826906338918 26.806845520536132 23.089841855504503 88-89 23.20481229313153 26.840746474791054 26.758891282979054 23.195549949098364 90-91 23.260318253058994 27.04072882903571 26.563930650731844 23.135022267173454 92-93 23.274847831872098 27.002250742855495 26.63153391330035 23.09136751197206 94-95 23.116024263167215 27.024192509507554 26.73152311734909 23.128260109976136 96-97 22.986700903303237 26.976966868799728 26.862003393345706 23.174328834551332 98-99 23.37129652732834 27.549362268676557 26.846428029270765 22.23291317472434 100-101 27.9297590281335 34.70684379885548 27.090494360993837 10.272902812017183 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 798.0 1 783.5 2 1325.5 3 2018.0 4 2965.5 5 5114.0 6 6791.5 7 7680.0 8 7994.5 9 7432.0 10 6418.0 11 5540.5 12 6031.5 13 8346.0 14 13517.5 15 20037.5 16 24918.5 17 27499.5 18 27936.0 19 26488.0 20 24137.0 21 22200.0 22 21881.5 23 24512.5 24 30104.5 25 37740.5 26 47723.5 27 59369.5 28 70781.0 29 82158.5 30 93159.0 31 103930.0 32 116476.0 33 128604.0 34 139603.5 35 153093.5 36 169562.0 37 183562.5 38 191387.5 39 197845.0 40 206623.0 41 215265.5 42 223899.5 43 235588.0 44 251586.0 45 268921.5 46 277661.0 47 283910.5 48 298252.0 49 308427.0 50 312836.5 51 312565.5 52 302881.5 53 293018.5 54 280275.5 55 263116.0 56 246035.0 57 228323.5 58 206617.5 59 175976.5 60 142351.0 61 112730.0 62 88308.0 63 67681.0 64 51650.5 65 39491.0 66 29630.0 67 22379.0 68 16943.5 69 12916.0 70 9775.0 71 7160.5 72 5200.5 73 3848.5 74 2797.0 75 1956.5 76 1272.5 77 783.0 78 516.5 79 371.5 80 255.0 81 164.0 82 114.5 83 82.5 84 58.0 85 39.0 86 32.0 87 24.5 88 12.5 89 3.5 90 2.0 91 2.0 92 1.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001572702525912946 3 4.4279974030558676E-4 4 0.0 5 0.0 6 6.871030453017726E-4 7 0.0 8 0.0 9 3.053791312452323E-5 10-11 3.8172391405654035E-4 12-13 3.6645495749427874E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 5.34690571510892E-5 28-29 7.643550074348812E-6 30-31 3.062518638297025E-5 32-33 2.3031199060265662E-4 34-35 5.39241364434721E-5 36-37 7.432204360845908E-4 38-39 1.3262789854371447E-4 40-41 8.656619374505738E-5 42-43 0.0 44-45 8.017498029098547E-6 46-47 0.0 48-49 8.201974608983164E-6 50-51 8.29214830573582E-6 52-53 0.0 54-55 6.006204155108953E-4 56-57 1.1117232240178737E-4 58-59 1.7297304777212877E-5 60-61 9.18452846062317E-4 62-63 8.843388280547297E-6 64-65 8.93777254620158E-6 66-67 3.6152012343020054E-5 68-69 0.0 70-71 0.0 72-73 9.366293444849672E-5 74-75 0.0 76-77 1.9165692490488787E-5 78-79 5.817531382915442E-5 80-81 0.0 82-83 0.0 84-85 3.0185265082973255E-5 86-87 5.907035482951074E-4 88-89 1.2377281829263238E-4 90-91 0.0 92-93 2.1221406542092768E-5 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 134.0 20-21 430.0 22-23 816.0 24-25 1464.0 26-27 3254.0 28-29 8430.0 30-31 17066.0 32-33 20807.0 34-35 27980.0 36-37 45745.0 38-39 56117.0 40-41 54549.0 42-43 59286.0 44-45 69831.0 46-47 70077.0 48-49 67675.0 50-51 61492.0 52-53 58212.0 54-55 62626.0 56-57 65788.0 58-59 64846.0 60-61 63511.0 62-63 59901.0 64-65 60921.0 66-67 64227.0 68-69 65475.0 70-71 65047.0 72-73 60546.0 74-75 60367.0 76-77 60008.0 78-79 63518.0 80-81 64399.0 82-83 60529.0 84-85 59775.0 86-87 60625.0 88-89 65348.0 90-91 69052.0 92-93 69410.0 94-95 74641.0 96-97 118082.0 98-99 532717.0 100-101 3934512.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.41053624395063 #Duplication Level Percentage of deduplicated Percentage of total 1 88.59791224565738 73.01401458259106 2 7.548011674063184 12.44071379270293 3 2.0564404176586377 5.0841707271894645 4 0.7702696041635203 2.539133245261252 5 0.37682508243698515 1.5527178556901422 6 0.20538062651835592 1.0155316539297754 7 0.12816589227735853 0.7393553937533069 8 0.0772873903060482 0.5095436224013554 9 0.060592396151219564 0.4494106673215105 >10 0.17439181439216223 2.2004028383667165 >50 0.0034869739547958687 0.1845318496304985 >100 0.0010669605914048366 0.1806280362414456 >500 1.689218289631755E-4 0.08984573492058773 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 6.107582624904646E-5 0.0 0.0 0.0 5 0.0 6.107582624904646E-5 0.0 0.0 0.0 6 0.0 6.107582624904646E-5 0.0 0.0 0.0 7 0.0 6.107582624904646E-5 0.0 0.0 0.0 8 0.0 6.107582624904646E-5 0.0 0.0 0.0 9 0.0 1.2215165249809291E-4 0.0 0.0 3.053791312452323E-5 10-11 0.0 1.2215165249809291E-4 0.0 0.0 3.053791312452323E-5 12-13 1.5268956562261614E-5 1.2215165249809291E-4 0.0 0.0 3.053791312452323E-5 14-15 2.290343484339242E-5 1.2978613077922372E-4 0.0 7.634478281130807E-6 9.161373937356969E-5 16-17 3.053791312452323E-5 1.3742060906035453E-4 0.0 1.5268956562261614E-5 1.068826959358313E-4 18-19 3.053791312452323E-5 1.3742060906035453E-4 0.0 5.344134796791565E-5 1.2215165249809291E-4 20-21 3.053791312452323E-5 1.3742060906035453E-4 0.0 7.634478281130807E-5 1.2215165249809291E-4 22-23 3.053791312452323E-5 1.5268956562261614E-4 0.0 9.161373937356969E-5 1.5268956562261614E-4 24-25 3.053791312452323E-5 2.137653918716626E-4 0.0 1.2215165249809291E-4 1.6795852218487776E-4 26-27 3.053791312452323E-5 2.4430330499618583E-4 0.0 1.6032404390374695E-4 1.6795852218487776E-4 28-29 3.053791312452323E-5 2.4430330499618583E-4 0.0 6.183927407715954E-4 1.6795852218487776E-4 30-31 3.053791312452323E-5 2.9011017468297067E-4 0.0 0.002015502266218533 1.6795852218487776E-4 32-33 3.053791312452323E-5 2.9011017468297067E-4 0.0 0.004344018141963429 1.8322747874713937E-4 34-35 3.053791312452323E-5 3.206480878074939E-4 0.0 0.00700845106207808 1.8322747874713937E-4 36-37 3.053791312452323E-5 3.511860009320171E-4 0.0 0.011398276073728293 1.9086195702827018E-4 38-39 3.053791312452323E-5 3.511860009320171E-4 0.0 0.018025003221749835 2.061309135905318E-4 40-41 3.053791312452323E-5 3.9699287061880197E-4 0.0 0.02611755019974849 2.137653918716626E-4 42-43 3.053791312452323E-5 3.9699287061880197E-4 0.0 0.03337793904510389 2.137653918716626E-4 44-45 3.053791312452323E-5 4.046273488999328E-4 0.0 0.04143231363169689 2.137653918716626E-4 46-47 3.053791312452323E-5 4.122618271810636E-4 0.0 0.049746260479848335 2.290343484339242E-4 48-49 3.053791312452323E-5 4.122618271810636E-4 0.0 0.05847246915518085 2.290343484339242E-4 50-51 3.053791312452323E-5 4.504342185867176E-4 0.0 0.0670383537866096 2.290343484339242E-4 52-53 3.053791312452323E-5 4.580686968678484E-4 0.0 0.07511563180804601 2.3666882671505502E-4 54-55 3.053791312452323E-5 4.580686968678484E-4 0.0 0.08311656504667109 2.4430330499618583E-4 56-57 3.053791312452323E-5 4.580686968678484E-4 0.0 0.09059835376217928 2.4430330499618583E-4 58-59 3.053791312452323E-5 4.7333765343011004E-4 0.0 0.09743121182379136 2.5193778327731663E-4 60-61 3.053791312452323E-5 4.886066099923717E-4 0.0 0.10421826301571664 2.7484121812070906E-4 62-63 3.053791312452323E-5 4.886066099923717E-4 0.0 0.1103563835537458 2.9011017468297067E-4 64-65 3.053791312452323E-5 4.886066099923717E-4 0.0 0.11687622800583153 2.9011017468297067E-4 66-67 3.053791312452323E-5 4.886066099923717E-4 0.0 0.12290746584792486 2.9011017468297067E-4 68-69 3.053791312452323E-5 4.886066099923717E-4 0.0 0.1291830069950144 2.9011017468297067E-4 70-71 3.053791312452323E-5 4.886066099923717E-4 0.0 0.1356570445774133 3.206480878074939E-4 72-73 3.053791312452323E-5 4.886066099923717E-4 0.0 0.1408103174171766 3.9699287061880197E-4 74-75 3.053791312452323E-5 5.038755665546333E-4 0.0 0.1447039013405533 3.9699287061880197E-4 76-77 3.053791312452323E-5 5.420479579602873E-4 0.0 0.1481241476104999 3.9699287061880197E-4 78-79 3.053791312452323E-5 5.573169145225489E-4 0.0 0.15142987670622954 3.9699287061880197E-4 80-81 3.053791312452323E-5 5.649513928036797E-4 0.0 0.15281935175339537 4.198963054621944E-4 82-83 3.053791312452323E-5 5.649513928036797E-4 0.0 0.15355989614666504 4.427997403055868E-4 84-85 3.053791312452323E-5 5.802203493659413E-4 0.0 0.15395688901728383 4.427997403055868E-4 86-87 3.053791312452323E-5 5.95489305928203E-4 0.0 0.15408667514806307 4.427997403055868E-4 88-89 3.053791312452323E-5 6.565651321772494E-4 0.0 0.15415538545259325 4.427997403055868E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7660 0.0 38.058975 1 GTATCAA 12320 0.0 32.18479 1 ATCAACG 13780 0.0 27.92469 3 CAACGCA 13805 0.0 27.874123 5 TCAACGC 14070 0.0 27.408583 4 AACGCAG 14605 0.0 26.519127 6 TATCAAC 14865 0.0 26.308723 2 ACGCAGA 16310 0.0 23.516272 7 CGCAGAG 17190 0.0 22.312412 8 TACATGG 17770 0.0 21.984293 2 GTACATG 18445 0.0 21.76936 1 ACATGGG 17720 0.0 21.40885 3 CATGGGG 13315 0.0 18.973415 4 GCAGAGT 21290 0.0 17.917286 9 GTACTAG 1840 0.0 17.048908 1 GAGTACT 11825 0.0 16.253145 12-13 AGAGTAC 18405 0.0 16.23751 10-11 CAGAGTA 20490 0.0 16.197874 10-11 GTACTTT 12130 0.0 15.862138 14-15 GAGTACA 13295 0.0 15.635837 1 >>END_MODULE