##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140098_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6721723 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.67051245640441 34.0 31.0 34.0 31.0 34.0 2 32.896131542463145 34.0 31.0 34.0 31.0 34.0 3 33.00803796883626 34.0 33.0 34.0 31.0 34.0 4 36.41711135671613 37.0 37.0 37.0 35.0 37.0 5 36.25098044058049 37.0 37.0 37.0 35.0 37.0 6 36.27148143415014 37.0 37.0 37.0 35.0 37.0 7 36.28780269582665 37.0 37.0 37.0 35.0 37.0 8 36.30702886744961 37.0 37.0 37.0 35.0 37.0 9 38.244668963597576 39.0 39.0 39.0 37.0 39.0 10-11 38.14443023016569 39.0 38.5 39.0 37.0 39.0 12-13 38.1322045701675 39.0 39.0 39.0 37.0 39.0 14-15 39.60685005912919 41.0 39.0 41.0 37.0 41.0 16-17 39.58856025456568 41.0 39.0 41.0 37.0 41.0 18-19 39.64158534947066 41.0 39.5 41.0 37.0 41.0 20-21 39.66926553040621 41.0 40.0 41.0 37.0 41.0 22-23 39.62108478830362 41.0 40.0 41.0 37.0 41.0 24-25 39.594647059642355 41.0 39.5 41.0 37.0 41.0 26-27 39.47836470136761 41.0 39.0 41.0 37.0 41.0 28-29 39.414235532372246 40.0 39.0 41.0 36.5 41.0 30-31 39.334861822759244 40.0 39.0 41.0 36.0 41.0 32-33 39.240150579115294 40.0 39.0 41.0 35.5 41.0 34-35 39.204768644562634 40.0 39.0 41.0 35.0 41.0 36-37 39.16600308585927 40.0 39.0 41.0 35.0 41.0 38-39 39.10171223557019 40.0 39.0 41.0 35.0 41.0 40-41 39.03708325583557 40.0 39.0 41.0 35.0 41.0 42-43 39.0255650584146 40.0 39.0 41.0 35.0 41.0 44-45 38.96020960182058 40.0 38.0 41.0 35.0 41.0 46-47 38.8457880287591 40.0 38.0 41.0 35.0 41.0 48-49 38.83178603021048 40.0 38.0 41.0 35.0 41.0 50-51 38.72022165148684 40.0 38.0 41.0 35.0 41.0 52-53 38.5503747845725 40.0 38.0 41.0 35.0 41.0 54-55 38.350391615901 40.0 37.0 41.0 34.5 41.0 56-57 38.19276700817943 40.0 37.0 41.0 34.0 41.0 58-59 38.02393636923031 39.5 36.5 41.0 34.0 41.0 60-61 37.79161525341027 39.0 36.0 41.0 34.0 41.0 62-63 37.624295378209105 39.0 35.0 41.0 34.0 41.0 64-65 37.35741803458673 39.0 35.0 40.5 33.5 41.0 66-67 37.1250226970273 38.0 35.0 40.0 33.0 41.0 68-69 36.867711657565046 37.0 35.0 40.0 33.0 41.0 70-71 36.434858332079784 37.0 35.0 39.5 33.0 41.0 72-73 36.18874177099708 36.0 35.0 39.0 33.0 41.0 74-75 35.83959176291258 36.0 35.0 39.0 32.5 40.0 76-77 34.05765693985353 34.5 33.0 36.5 30.0 39.0 78-79 35.03387710821442 35.0 34.0 37.0 31.5 39.0 80-81 34.97903491817103 35.0 34.0 37.0 32.0 39.0 82-83 34.727327004268666 35.0 34.0 36.0 32.0 38.0 84-85 34.50319035064774 35.0 34.0 36.0 32.0 37.0 86-87 34.3349936548429 35.0 34.0 35.5 32.0 37.0 88-89 34.18882185265275 35.0 34.0 35.0 31.5 36.5 90-91 34.132680232569946 35.0 34.0 35.0 32.0 36.0 92-93 34.02465375204847 35.0 34.0 35.0 31.5 36.0 94-95 33.88702366209612 35.0 34.0 35.0 31.0 36.0 96-97 33.91743496286694 35.0 34.0 35.0 31.0 35.5 98-99 33.952210943048016 35.0 34.0 35.0 31.0 35.0 100-101 32.733341558718834 34.0 32.0 35.0 28.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 6.0 19 19.0 20 24.0 21 79.0 22 241.0 23 816.0 24 2219.0 25 4874.0 26 9391.0 27 15822.0 28 24078.0 29 34714.0 30 48470.0 31 66222.0 32 91208.0 33 131084.0 34 219324.0 35 370123.0 36 776503.0 37 1654956.0 38 2150798.0 39 1100142.0 40 20608.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.233156141661894 20.064498343653852 12.772662604513755 23.929682910170502 2 15.478195901035594 21.15776946996191 40.4389012279576 22.925133401044892 3 18.374149784346972 26.740648204309732 30.216819403848177 24.668382607495122 4 12.362023844183998 17.473287726971197 39.197063014944234 30.967625413900574 5 12.888897682930404 38.49197594128767 35.516384712669655 13.102741663112273 6 29.83921886241603 37.920467549500984 18.891798543341224 13.348515044741763 7 26.61216476787276 32.80148557148219 23.412538719611028 17.173810941034017 8 25.436305542492605 35.53132135912176 21.298675949603993 17.733697148781644 9 26.649421085846754 15.513896587808897 21.224814117572848 36.611868208771504 10-11 24.932749502636796 26.269926607081022 28.553880920704927 20.243442969577252 12-13 25.62581922297958 24.0388818912269 28.681144822295053 21.65415406349847 14-15 22.733724671486762 25.163585289069484 26.66179489990885 25.44089513953491 16-17 21.98893051677375 28.03878559113489 27.261722924315684 22.710560967775674 18-19 21.711323123550315 27.583582364224174 29.20864932994115 21.49644518228436 20-21 22.943791922032652 26.693389945860886 28.77848860827611 21.584329523830352 22-23 22.718322672904538 26.727096221798814 28.514599308260586 22.03998179703606 24-25 22.26914597919035 26.78663215356011 28.887985087575967 22.056236779673576 26-27 22.281500392626803 27.068741324064117 28.546529067408997 22.103229215900082 28-29 22.032489374462205 27.54673560383972 28.414584086092 22.006190935606075 30-31 22.476556400973912 27.090218450928923 28.46022786638286 21.97299728171431 32-33 22.14413921906748 27.284239054425008 28.287811994866125 22.283809731641387 34-35 22.246443068364698 27.43316737459814 28.463367844207337 21.85702171282983 36-37 22.426386296144717 27.227769203295082 28.341690827570016 22.00415367299018 38-39 22.234844222336843 27.322304851131623 28.391511758264933 22.05133916826661 40-41 22.346191146381557 27.11869602809076 28.42865764045846 22.106455185069223 42-43 22.375426502799215 27.279059924382203 27.98362008561189 22.36189348720669 44-45 22.36327296129889 27.757061792105866 27.72310327269731 22.156561973897936 46-47 22.361028385068302 27.487534134663893 27.50836482347619 22.643072656791617 48-49 22.610109951717153 27.54836868645124 27.400741009360285 22.440780352471318 50-51 22.433791062924172 27.54317506315821 27.311104580176544 22.711929293741072 52-53 22.470786845276105 27.51994617732705 27.150819396120596 22.858447581276252 54-55 22.455147526087423 27.612085552448807 27.138253251401025 22.79451367006275 56-57 22.727279912656392 27.575036322912805 26.979756826178352 22.717926938252454 58-59 22.486129853213097 27.697905816383656 27.264562148562355 22.551402181840892 60-61 22.655976223423533 27.761036632048086 27.056080501564807 22.526906642963574 62-63 22.724522486330617 27.46261314597095 27.006581942062745 22.80628242563569 64-65 22.46162915021512 27.611186599174264 27.0753329350553 22.85185131555531 66-67 22.64981805951975 27.573002698629622 26.881823360958435 22.895355880892193 68-69 22.57298707399339 27.550196721899468 27.063535880173095 22.813280323934045 70-71 22.58245269599447 27.23825947065478 27.032175528338282 23.14711230501247 72-73 22.701965852191215 27.437441232642882 27.250751155712344 22.60984175945356 74-75 22.64061656043528 27.544218764044853 27.12506974344938 22.690094932070487 76-77 22.632259790091993 27.31342953474078 26.984541080195555 23.069769594971675 78-79 22.609812272298903 27.412203037725906 27.004676698036 22.973307991939187 80-81 22.500604070756253 27.500427528950727 27.13277390142076 22.866194498872257 82-83 22.918683359864332 27.149235494983202 27.42586620477878 22.506214940373685 84-85 23.11016121214694 27.27003972205887 27.027376292957577 22.59242277283661 86-87 22.551388885317674 27.46326179189465 27.175893872976115 22.809455449811562 88-89 22.878319201908813 27.075936735609098 27.14521801144886 22.900526051033225 90-91 22.96384876961867 27.015492987429734 27.19770007983068 22.822958163120912 92-93 23.09757320666637 27.083678300320557 27.077623797759315 22.741124695253752 94-95 22.593419045648545 27.09877686729828 27.41295644935451 22.89484763769866 96-97 22.680376167727122 27.14773936034689 27.304502517333646 22.867381954592343 98-99 22.866931879111785 27.777549185527235 27.289118537491202 22.06640039786978 100-101 27.154146514855803 34.60481229553911 28.017002126757955 10.224039062847122 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 843.0 1 1001.0 2 2169.5 3 3427.0 4 5276.5 5 9291.5 6 12178.5 7 13355.0 8 13383.5 9 12068.5 10 10252.5 11 8799.5 12 9878.5 13 14352.5 14 23814.5 15 35377.0 16 43655.5 17 47553.0 18 47015.5 19 43146.5 20 38077.5 21 33358.0 22 30950.5 23 32329.5 24 37147.5 25 45271.0 26 56987.5 27 69164.0 28 80918.0 29 96176.5 30 110526.0 31 123073.5 32 138510.5 33 154151.0 34 169853.0 35 187319.0 36 203582.5 37 220344.5 38 230977.5 39 234478.5 40 240274.0 41 244976.0 42 251995.5 43 265854.0 44 281023.5 45 298300.0 46 312661.0 47 322679.0 48 325910.0 49 320755.0 50 314793.0 51 309664.5 52 302993.5 53 295053.0 54 283453.0 55 264423.0 56 244995.5 57 217536.5 58 185603.0 59 159436.0 60 132182.5 61 105989.0 62 84307.0 63 65363.5 64 48837.0 65 35627.0 66 25989.5 67 19813.0 68 15235.0 69 11237.5 70 8347.0 71 5850.0 72 4094.5 73 2848.0 74 2014.0 75 1412.5 76 922.0 77 582.5 78 383.5 79 270.0 80 193.5 81 137.5 82 102.0 83 71.5 84 46.5 85 29.0 86 22.0 87 18.5 88 13.5 89 7.5 90 4.5 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0011009082046374123 3 6.843483434232562E-4 4 0.0 5 0.0 6 5.802083781197172E-4 7 0.0 8 0.0 9 1.487713790050557E-5 10-11 3.79367016462892E-4 12-13 4.983841196669366E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 1.0420416155694117E-4 28-29 7.449982123767894E-6 30-31 5.9747431177867576E-5 32-33 3.149607007785604E-4 34-35 2.2613599984863965E-5 36-37 7.974040776054913E-4 38-39 2.688430148823812E-4 40-41 1.1671270723605558E-4 42-43 0.0 44-45 0.0 46-47 0.0 48-49 8.273702005082039E-6 50-51 8.406522620901558E-6 52-53 0.0 54-55 8.131572300058477E-4 56-57 3.5128530022071256E-5 58-59 0.0 60-61 9.789576675137068E-4 62-63 0.0 64-65 0.0 66-67 9.487183573966257E-6 68-69 0.0 70-71 0.0 72-73 4.983449465978539E-5 74-75 1.012241543101498E-5 76-77 1.0287085818778993E-5 78-79 4.182436631118395E-5 80-81 0.0 82-83 0.0 84-85 2.1996317596471177E-5 86-87 5.254316756597466E-4 88-89 1.1370621543188918E-4 90-91 1.157973125528108E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 133.0 20-21 511.0 22-23 972.0 24-25 1820.0 26-27 4417.0 28-29 12687.0 30-31 26233.0 32-33 32136.0 34-35 43392.0 36-37 68403.0 38-39 85274.0 40-41 81191.0 42-43 89008.0 44-45 103937.0 46-47 103119.0 48-49 98350.0 50-51 87674.0 52-53 81104.0 54-55 86193.0 56-57 89041.0 58-59 87422.0 60-61 86410.0 62-63 80052.0 64-65 80702.0 66-67 84637.0 68-69 85527.0 70-71 85229.0 72-73 77770.0 74-75 78587.0 76-77 77878.0 78-79 80168.0 80-81 81141.0 82-83 76063.0 84-85 73634.0 86-87 74319.0 88-89 78255.0 90-91 81930.0 92-93 79745.0 94-95 81445.0 96-97 113996.0 98-99 472940.0 100-101 3508278.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.83425573921413 #Duplication Level Percentage of deduplicated Percentage of total 1 88.49756779967105 72.42132595616721 2 7.3946047393995755 12.102639506688593 3 2.0982782555298076 5.151331181251751 4 0.8601646114528014 2.8156372316580125 5 0.42966306690464 1.758057864938469 6 0.25139742085461175 1.2343752498237084 7 0.14256294900129565 0.8166572979255999 8 0.0870953097849622 0.570190388370294 9 0.05731856207591491 0.42215596807719974 >10 0.17599161902923996 2.056887952238176 >50 0.003246083777636282 0.17674101086968708 >100 0.001812808095334102 0.28502589068692064 >500 2.9677442313569865E-4 0.18897450130432733 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 1.487713790050557E-5 5.950855160202228E-5 0.0 0.0 0.0 3 1.487713790050557E-5 7.438568950252785E-5 0.0 0.0 0.0 4 1.487713790050557E-5 7.438568950252785E-5 0.0 0.0 0.0 5 4.463141370151671E-5 7.438568950252785E-5 0.0 0.0 0.0 6 4.463141370151671E-5 7.438568950252785E-5 0.0 0.0 0.0 7 1.487713790050557E-4 7.438568950252785E-5 0.0 0.0 0.0 8 1.487713790050557E-4 7.438568950252785E-5 0.0 0.0 0.0 9 1.487713790050557E-4 7.438568950252785E-5 0.0 0.0 0.0 10-11 1.487713790050557E-4 7.438568950252785E-5 0.0 0.0 0.0 12-13 1.7852565480606683E-4 7.438568950252785E-5 0.0 0.0 0.0 14-15 2.380342064080891E-4 7.438568950252785E-5 0.0 0.0 0.0 16-17 2.6034991325884745E-4 8.926282740303343E-5 0.0 7.438568950252785E-6 0.0 18-19 3.7192844751263924E-4 1.4133281005480292E-4 0.0 4.463141370151671E-5 0.0 20-21 4.3143699911466155E-4 1.487713790050557E-4 0.0 7.438568950252785E-5 0.0 22-23 4.6119127491567265E-4 1.6364851690556126E-4 0.0 1.1901710320404456E-4 0.0 24-25 5.50454102318706E-4 2.2315706850758354E-4 0.0 1.8596422375631962E-4 0.0 26-27 5.653312402192117E-4 2.2315706850758354E-4 0.0 3.1241989591061694E-4 0.0 28-29 6.992254813237618E-4 2.2315706850758354E-4 0.0 0.0014505209452992931 0.0 30-31 7.438568950252785E-4 2.2315706850758354E-4 0.0 0.004269738577445099 0.0 32-33 7.512954639755313E-4 2.2315706850758354E-4 0.0 0.009142001239860673 0.0 34-35 8.256811534780591E-4 2.6034991325884745E-4 0.0 0.015211873503266946 0.0 36-37 8.777511361298286E-4 2.6778848220910026E-4 0.0 0.02430180476047585 0.0 38-39 9.744525324831149E-4 2.975427580101114E-4 0.0 0.03861361142076221 0.0 40-41 9.893296703836203E-4 3.421741717116281E-4 0.0 0.05401888771673573 0.0 42-43 0.0010860310667369067 3.942441543633976E-4 0.0 0.0684869043249774 0.0 44-45 0.00117529389413994 4.3143699911466155E-4 0.0 0.08346074362183625 0.0 46-47 0.0013240652731449957 4.3143699911466155E-4 0.0 0.099490859709631 0.0 48-49 0.0013984509626475236 5.430155333684533E-4 0.0 0.11535732728052019 0.0 50-51 0.0013984509626475236 7.066640502740145E-4 0.0 0.1316775475573748 0.0 52-53 0.0013984509626475236 7.661726018760368E-4 0.0 0.1468299125090397 0.0 54-55 0.001413328100548029 7.736111708262896E-4 0.0 0.16208641742600818 0.0 56-57 0.0015025909279510626 8.256811534780591E-4 0.0 0.1741368991254177 0.0 58-59 0.0015323452037520737 8.703125671795759E-4 0.0 0.18399300298450263 0.0 60-61 0.0015323452037520737 9.298211187815981E-4 0.0 0.19337303843077142 0.0 62-63 0.0015472223416525793 9.521368256323564E-4 0.0 0.20258198679118433 0.0 64-65 0.0015472223416525793 9.670139635328621E-4 0.0 0.21117353392872631 0.0 66-67 0.001695993720657635 9.670139635328621E-4 0.0 0.21986178246262156 0.0 68-69 0.0017108708585581406 9.670139635328621E-4 0.0 0.22881781947872593 0.0 70-71 0.0017480637033094044 0.0010190839461846316 0.0 0.23702999959980497 0.0 72-73 0.0017852565480606683 0.0010860310667369067 0.0 0.2433602217764701 0.0 74-75 0.001800133685961174 0.0011157853425379177 0.0 0.249065604161314 0.0 76-77 0.001800133685961174 0.0011529781872891818 0.0 0.25383372685842603 0.0 78-79 0.001800133685961174 0.0011976096009906983 0.0 0.25833406107332896 0.0 80-81 0.0018893965133642073 0.001205048169940951 0.0 0.2603499132588475 0.0 82-83 0.0019265893581154713 0.001205048169940951 0.0 0.2611235244296738 0.0 84-85 0.001971220771816988 0.001205048169940951 0.0 0.26172604851464426 0.0 86-87 0.0020307293234190105 0.001205048169940951 0.0 0.2618525041867985 0.0 88-89 0.0020530450302697688 0.001205048169940951 0.0 0.26191201273840053 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10860 0.0 38.791416 1 GTATCAA 18535 0.0 33.565094 1 ATCAACG 21905 0.0 27.50759 3 CAACGCA 22010 0.0 27.321936 5 AACGCAG 23120 0.0 26.45964 6 TATCAAC 23425 0.0 26.38787 2 TCAACGC 23160 0.0 26.15493 4 ACGCAGA 26055 0.0 23.080763 7 TACATGG 26475 0.0 23.07642 2 CGCAGAG 26320 0.0 22.848375 8 GTACATG 27390 0.0 22.626257 1 ACATGGG 26660 0.0 22.197016 3 GCAGAGT 30445 0.0 19.700178 9 CATGGGG 18760 0.0 19.667341 4 GTACTAG 2745 0.0 18.765509 1 CGACGAG 1115 0.0 18.517004 24-25 ACGGTAC 735 0.0 18.471329 3 GGTTCAC 2525 0.0 17.712084 6 GAGTACT 16455 0.0 17.678337 12-13 GGCGTCG 1665 0.0 17.267698 8 >>END_MODULE