##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140096_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6515863 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.73076336933419 34.0 31.0 34.0 31.0 34.0 2 32.93965158567637 34.0 31.0 34.0 31.0 34.0 3 33.04933498448325 34.0 33.0 34.0 31.0 34.0 4 36.434547503531 37.0 37.0 37.0 35.0 37.0 5 36.2955722058613 37.0 37.0 37.0 35.0 37.0 6 36.320789893832945 37.0 37.0 37.0 35.0 37.0 7 36.32468592418226 37.0 37.0 37.0 35.0 37.0 8 36.334708541293764 37.0 37.0 37.0 35.0 37.0 9 38.23681790117441 39.0 39.0 39.0 37.0 39.0 10-11 38.14322860993241 39.0 38.5 39.0 37.0 39.0 12-13 38.12979454908736 39.0 38.5 39.0 37.0 39.0 14-15 39.62305683836508 41.0 39.0 41.0 37.0 41.0 16-17 39.59475859145596 41.0 39.0 41.0 37.0 41.0 18-19 39.63581393592837 41.0 39.5 41.0 37.0 41.0 20-21 39.65360569770922 41.0 40.0 41.0 37.0 41.0 22-23 39.60374857938598 41.0 39.5 41.0 37.0 41.0 24-25 39.58295356743686 41.0 39.0 41.0 37.0 41.0 26-27 39.46445476163316 41.0 39.0 41.0 37.0 41.0 28-29 39.39319830380314 40.5 39.0 41.0 37.0 41.0 30-31 39.31970745346861 40.0 39.0 41.0 36.0 41.0 32-33 39.23212097789627 40.0 39.0 41.0 36.0 41.0 34-35 39.18357741922726 40.0 39.0 41.0 36.0 41.0 36-37 39.13244765507551 40.0 39.0 41.0 35.0 41.0 38-39 39.05624193440697 40.0 39.0 41.0 35.0 41.0 40-41 39.00830304674448 40.0 39.0 41.0 35.0 41.0 42-43 38.99933821326744 40.0 39.0 41.0 35.0 41.0 44-45 38.9285831079879 40.0 38.0 41.0 35.0 41.0 46-47 38.81039890828448 40.0 38.0 41.0 35.0 41.0 48-49 38.79657644471847 40.0 38.0 41.0 35.0 41.0 50-51 38.645953082904214 40.0 38.0 41.0 35.0 41.0 52-53 38.48512447117666 40.0 38.0 41.0 34.5 41.0 54-55 38.280242455403965 40.0 37.0 41.0 34.0 41.0 56-57 38.111650247324775 40.0 37.0 41.0 34.0 41.0 58-59 37.94481362341508 39.5 36.5 41.0 34.0 41.0 60-61 37.70320506032314 39.0 36.0 41.0 33.5 41.0 62-63 37.54344203405426 39.0 35.5 41.0 33.0 41.0 64-65 37.278485251086295 38.5 35.0 40.0 33.0 41.0 66-67 37.04083317159261 38.0 35.0 40.0 33.0 41.0 68-69 36.77798584737218 37.0 35.0 40.0 33.0 41.0 70-71 36.33537589609796 37.0 35.0 39.0 32.5 41.0 72-73 36.07835607845213 36.0 35.0 39.0 32.0 41.0 74-75 35.72437301999 36.0 35.0 39.0 32.0 40.0 76-77 33.9537597113642 34.5 32.0 36.5 29.0 39.0 78-79 34.96224150273859 35.0 34.0 37.0 31.5 39.0 80-81 34.90871955526755 35.0 34.0 37.0 32.0 39.0 82-83 34.66045280591162 35.0 34.0 36.0 31.5 38.0 84-85 34.43547486879572 35.0 34.0 36.0 31.0 37.0 86-87 34.26465914341132 35.0 34.0 35.5 31.0 37.0 88-89 34.113652682787105 35.0 34.0 35.0 31.0 36.5 90-91 34.06027271242348 35.0 34.0 35.0 31.0 36.0 92-93 33.94782029303218 35.0 34.0 35.0 31.0 36.0 94-95 33.80834742378484 35.0 34.0 35.0 31.0 36.0 96-97 33.8405198943447 35.0 34.0 35.0 31.0 35.5 98-99 33.875709694676544 35.0 34.0 35.0 31.0 35.0 100-101 32.6628079816125 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 6.0 20 25.0 21 72.0 22 357.0 23 1032.0 24 2644.0 25 5767.0 26 10962.0 27 17887.0 28 27632.0 29 39188.0 30 53537.0 31 71773.0 32 97233.0 33 138577.0 34 220653.0 35 373301.0 36 773887.0 37 1656250.0 38 2037797.0 39 966483.0 40 20799.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.47923874396991 19.979210735400667 12.818424819551916 24.723125701077507 2 15.273657656396686 20.64605549567535 40.56914383481228 23.511143013115685 3 18.481408889030085 26.2220509470092 30.049499457398284 25.247040706562434 4 12.423005210514708 17.490591806488258 38.143128546441204 31.943274436555836 5 13.072005964520738 38.02289888538172 35.65555322449229 13.249541925605248 6 30.544821011236024 37.524532568999675 18.29053805594623 13.640108363818074 7 26.881765316428535 32.04247848673307 22.849037802053235 18.22671839478516 8 25.351822160779008 35.78720117350534 21.04556219183859 17.81541447387706 9 25.88808321358703 15.954688399488079 20.631063379364104 37.526165007560785 10-11 24.81680796336313 26.170355625675278 28.545943424025143 20.46689298693645 12-13 25.51818369891446 23.497176724521612 28.510923233795328 22.4737163427686 14-15 22.666560055053335 24.905948759205035 25.724842588004076 26.702648597737554 16-17 22.529525252449293 28.17607583216529 26.35073819078148 22.94366072460394 18-19 22.483974877924844 27.214200175786385 27.987451547093606 22.314373399195166 20-21 23.192432420818058 26.64937251465309 27.640173181965377 22.518021882563474 22-23 23.081220721338127 26.779735133104953 27.457235752042493 22.681808393514423 24-25 22.90829873843432 26.90658279664739 27.708199938994877 22.476918525923416 26-27 22.83031268090517 27.222793782313403 27.675753448426764 22.27114008835466 28-29 22.47390815122217 27.042399840075404 27.814472407859352 22.66921960084308 30-31 22.869248807683164 27.310801232298033 27.372277604145424 22.447672355873387 32-33 23.173064795965704 26.95462403693073 27.47249591956105 22.399815247542513 34-35 22.752394233928424 27.004264257698974 27.685369473839888 22.557972034532717 36-37 22.634534850691303 27.23248434407754 27.524919832595362 22.608060972635794 38-39 22.566625075078473 26.835087467989556 27.836529037462586 22.761758419469384 40-41 22.701271860738117 26.714989030243743 28.005184881434918 22.578554227583222 42-43 22.90836055637019 26.688621137346143 27.723927399011366 22.6790909072723 44-45 22.626568112225442 27.333636406059973 27.421120955538004 22.61867452617658 46-47 23.021435990699622 26.811770490742816 27.045246206623514 23.121547311934055 48-49 22.94477421089586 26.701036644483583 27.13923604091607 23.214953103704485 50-51 22.51743184513376 26.92028736335899 27.425538303093532 23.136742488413713 52-53 22.7201070834066 27.10996379966355 27.352695457484316 22.817233659445534 54-55 22.795745838949617 27.02670315376225 27.026968878107528 23.150582129180606 56-57 23.117783932171672 27.205032446539366 26.781278993371828 22.89590462791713 58-59 22.64076016039717 27.485589412822925 27.31164495739148 22.56200546938842 60-61 23.010786559679055 27.836683002537953 26.504151176023182 22.648379261759807 62-63 22.760673584557566 27.9269203435467 26.52500753051099 22.787398541384743 64-65 22.68064850122709 27.731126158733225 26.64285441393539 22.945370926104296 66-67 22.84568357604161 27.56661306481832 26.51877378705984 23.06892957208023 68-69 22.840761322539795 27.3768069870212 26.77911808474591 23.003313605693094 70-71 22.904697810942835 27.0149093555259 26.821201364487813 23.25919146904345 72-73 22.94505031204229 27.176126974925307 26.837623016719142 23.04119969631326 74-75 22.739262892324465 27.370498239448704 26.876622173239035 23.0136166949878 76-77 22.887738380131754 27.318489652865523 26.702048781262498 23.09172318574022 78-79 22.95389072165363 27.261005132411388 26.673652616363807 23.111451529571173 80-81 22.830076624839812 27.345094971202016 26.687794015479803 23.137034388478362 82-83 23.073469689504254 27.155946270883263 26.918807049396243 22.851776990216237 84-85 23.210877418515473 27.1379184195703 26.648363888048156 23.00284027386607 86-87 22.82630077051193 27.309377504873495 26.9057800523646 22.95854167224997 88-89 23.059693913809692 27.06600449117642 26.815928110259907 23.058373484753982 90-91 23.073799578870688 27.14199324955767 26.82701762809132 22.957189543480318 92-93 23.147565001148457 27.12409999324307 26.79606275693052 22.932272248677947 94-95 22.864593957551353 27.26263830766148 26.87453889957738 22.998228835209787 96-97 22.817047739803648 27.22610286110948 26.939156223695367 23.0176931753915 98-99 23.196561730365776 27.778332041107966 26.929786554775152 22.095319673751103 100-101 27.647448733423047 34.85436638780855 27.27876716657649 10.21941771219191 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 848.0 1 901.0 2 1647.5 3 2500.0 4 3533.5 5 5797.0 6 7533.5 7 8501.5 8 8956.5 9 8462.0 10 7381.0 11 6427.0 12 7001.5 13 9592.5 14 15366.0 15 22649.0 16 27996.5 17 30632.0 18 30691.5 19 28723.0 20 25977.0 21 23671.0 22 23056.0 23 25417.5 24 30681.5 25 38175.0 26 48672.0 27 61025.0 28 72004.0 29 83744.5 30 95330.0 31 105449.0 32 118705.0 33 134204.5 34 147994.0 35 161899.5 36 178670.0 37 193429.0 38 201336.5 39 206500.5 40 214626.0 41 222443.0 42 227983.5 43 236586.5 44 250921.0 45 269039.5 46 285968.0 47 301456.0 48 308977.0 49 308538.0 50 308138.5 51 306007.5 52 296505.5 53 285049.0 54 273642.0 55 255789.5 56 236953.5 57 218348.0 58 197403.5 59 172740.0 60 143167.5 61 113311.5 62 88621.0 63 68729.0 64 52136.5 65 38772.5 66 28755.5 67 21725.5 68 16526.0 69 12281.5 70 9338.0 71 7113.5 72 5231.0 73 3888.0 74 2851.0 75 1962.5 76 1282.5 77 828.0 78 541.5 79 377.5 80 285.5 81 209.0 82 142.5 83 98.5 84 67.0 85 44.0 86 27.5 87 20.0 88 15.5 89 9.5 90 5.0 91 2.5 92 2.0 93 2.0 94 1.5 95 1.0 96 1.0 97 0.5 98 0.0 99 0.5 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001166384253321471 3 5.218034817490792E-4 4 0.0 5 0.0 6 5.371506429769932E-4 7 0.0 8 0.0 9 6.138864491165637E-5 10-11 3.5298470824202414E-4 12-13 4.143733531536805E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 8.445433020767857E-5 28-29 7.682772190054881E-6 30-31 5.387260529535387E-5 32-33 2.933060157372571E-4 34-35 1.54942755237007E-5 36-37 8.17809491824086E-4 38-39 1.4136093829736406E-4 40-41 6.341582860667419E-5 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 1.6773483002003926E-5 52-53 0.0 54-55 5.485891871871167E-4 56-57 6.0753146340356316E-5 58-59 0.0 60-61 8.913475026091969E-4 62-63 0.0 64-65 0.0 66-67 2.789179582350109E-5 68-69 0.0 70-71 0.0 72-73 5.8125538569443305E-5 74-75 1.961070399289622E-5 76-77 0.0 78-79 3.0155169455466994E-5 80-81 0.0 82-83 0.0 84-85 5.229163378830192E-5 86-87 5.402314605803696E-4 88-89 7.514631255434019E-5 90-91 2.1784048195028226E-5 92-93 2.2117598608272223E-5 94-95 1.1232652151608903E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 92.0 20-21 409.0 22-23 858.0 24-25 1553.0 26-27 3202.0 28-29 8576.0 30-31 18144.0 32-33 22374.0 34-35 30025.0 36-37 48687.0 38-39 60157.0 40-41 58174.0 42-43 63232.0 44-45 74790.0 46-47 74953.0 48-49 72112.0 50-51 65484.0 52-53 63015.0 54-55 70177.0 56-57 74923.0 58-59 76133.0 60-61 76184.0 62-63 76285.0 64-65 76846.0 66-67 82722.0 68-69 71925.0 70-71 67992.0 72-73 62465.0 74-75 61628.0 76-77 62251.0 78-79 65592.0 80-81 66643.0 82-83 62216.0 84-85 60522.0 86-87 61623.0 88-89 66235.0 90-91 69144.0 92-93 69584.0 94-95 73271.0 96-97 112872.0 98-99 505377.0 100-101 3777416.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.66758970651907 #Duplication Level Percentage of deduplicated Percentage of total 1 87.9685261808102 71.84177503221588 2 7.829408304607501 12.788178101309969 3 2.2033786646479205 5.398338742576928 4 0.8986350078407207 2.935574204650021 5 0.41659098519645776 1.7010990827229435 6 0.23715579599244008 1.162076534618012 7 0.13401509784654356 0.7661283017787369 8 0.08998297493285162 0.5878954141910493 9 0.05519737888071031 0.4057053202174617 >10 0.16365902893353085 1.9358868038520394 >50 0.0020217432717715713 0.10624413015053712 >100 0.0011268564153456158 0.18862672112958373 >500 2.3487382795808368E-4 0.10922539235724063 >1k 6.710679618995976E-5 0.07324621822957046 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.5347161227914094E-5 2 0.0 0.0 0.0 0.0 1.5347161227914094E-5 3 0.0 1.5347161227914094E-5 0.0 0.0 1.5347161227914094E-5 4 0.0 3.069432245582819E-5 0.0 0.0 1.5347161227914094E-5 5 0.0 3.069432245582819E-5 0.0 0.0 1.5347161227914094E-5 6 2.455545796466255E-4 3.069432245582819E-5 0.0 0.0 4.604148368374228E-5 7 2.455545796466255E-4 3.069432245582819E-5 0.0 0.0 4.604148368374228E-5 8 2.455545796466255E-4 3.069432245582819E-5 0.0 0.0 4.604148368374228E-5 9 2.455545796466255E-4 3.069432245582819E-5 0.0 0.0 4.604148368374228E-5 10-11 2.5322816026058256E-4 3.069432245582819E-5 0.0 0.0 4.604148368374228E-5 12-13 2.609017408745396E-4 3.836790306978523E-5 0.0 0.0 4.604148368374228E-5 14-15 2.9159606333036773E-4 6.138864491165637E-5 0.0 2.3020741841871142E-5 6.138864491165637E-5 16-17 4.604148368374228E-4 7.673580613957046E-5 0.0 3.069432245582819E-5 7.673580613957046E-5 18-19 4.604148368374228E-4 7.673580613957046E-5 0.0 3.069432245582819E-5 7.673580613957046E-5 20-21 4.604148368374228E-4 9.208296736748456E-5 0.0 4.604148368374228E-5 7.673580613957046E-5 22-23 4.7576199806533687E-4 9.208296736748456E-5 0.0 6.138864491165637E-5 7.673580613957046E-5 24-25 4.91109159293251E-4 9.208296736748456E-5 0.0 9.208296736748456E-5 7.673580613957046E-5 26-27 4.91109159293251E-4 9.208296736748456E-5 0.0 1.5347161227914093E-4 9.208296736748456E-5 28-29 4.91109159293251E-4 9.208296736748456E-5 0.0 7.750316420096616E-4 9.975654798144161E-5 30-31 4.91109159293251E-4 9.975654798144161E-5 0.0 0.0032305774384759163 1.0743012859539865E-4 32-33 4.91109159293251E-4 1.0743012859539865E-4 0.0 0.007213165777119623 1.2277728982331275E-4 34-35 5.06456320521165E-4 1.0743012859539865E-4 0.0 0.01202450082207069 1.3812445105122683E-4 36-37 5.06456320521165E-4 1.304508704372698E-4 0.0 0.01851635002147835 1.3812445105122683E-4 38-39 5.06456320521165E-4 1.6114519289309797E-4 0.0 0.029105891268739074 1.3812445105122683E-4 40-41 5.06456320521165E-4 1.7649235412101207E-4 0.0 0.04053185280292112 1.3812445105122683E-4 42-43 5.985392878886496E-4 2.148602571907973E-4 0.0 0.05005476634484181 1.4579803166518386E-4 44-45 6.445807715723919E-4 2.148602571907973E-4 0.0 0.06088986217174916 1.6114519289309797E-4 46-47 6.67601513414263E-4 2.148602571907973E-4 0.0 0.07205492196505667 1.7649235412101207E-4 48-49 6.7527509402822E-4 2.2253383780475436E-4 0.0 0.08283630272766632 2.302074184187114E-4 50-51 6.906222552561342E-4 2.3788099903266843E-4 0.0 0.09372511361887137 2.302074184187114E-4 52-53 7.059694164840483E-4 2.455545796466255E-4 0.0 0.10359333828842013 2.839224827164107E-4 54-55 7.366637389398764E-4 2.609017408745396E-4 0.0 0.11353829876410845 3.453111276280671E-4 56-57 7.673580613957046E-4 2.609017408745396E-4 0.0 0.12318398959585247 3.5298470824202414E-4 58-59 8.594410287631892E-4 2.609017408745396E-4 0.0 0.1327145767183871 3.5298470824202414E-4 60-61 8.747881899911033E-4 2.7624890210245365E-4 0.0 0.14185381122960994 3.683318694699382E-4 62-63 8.747881899911033E-4 2.7624890210245365E-4 0.0 0.15008756322838585 3.683318694699382E-4 64-65 8.747881899911033E-4 2.7624890210245365E-4 0.0 0.15732374974734736 3.683318694699382E-4 66-67 9.208296736748456E-4 3.0694322455828186E-4 0.0 0.16498965678069044 3.683318694699382E-4 68-69 9.208296736748456E-4 3.0694322455828186E-4 0.0 0.17291646555490808 3.683318694699382E-4 70-71 9.208296736748456E-4 3.1461680517223887E-4 0.0 0.18056702542702324 3.913526113118093E-4 72-73 9.438504155167167E-4 3.2229038578619594E-4 0.0 0.18620710717828168 4.143733531536805E-4 74-75 9.822183185865018E-4 3.2229038578619594E-4 0.0 0.1904199029353441 4.143733531536805E-4 76-77 9.97565479814416E-4 3.3763754701411E-4 0.0 0.19471710807916004 4.143733531536805E-4 78-79 9.97565479814416E-4 3.3763754701411E-4 0.0 0.19835438529017568 4.143733531536805E-4 80-81 9.97565479814416E-4 3.3763754701411E-4 0.0 0.1999965315415625 4.297205143815946E-4 82-83 9.97565479814416E-4 3.3763754701411E-4 0.0 0.20068715379681862 4.527412562234657E-4 84-85 0.0010743012859539863 3.3763754701411E-4 0.0 0.20113989505304208 4.604148368374228E-4 86-87 0.0010743012859539863 3.3763754701411E-4 0.0 0.20129336666532122 4.7576199806533687E-4 88-89 0.0010819748665679436 3.3763754701411E-4 0.0 0.20141614395514454 4.7576199806533687E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7540 0.0 42.061844 1 CTTATAC 7390 0.0 38.047737 1 TATACAC 8265 0.0 36.07088 3 GTATCAA 12785 0.0 34.63802 1 TTATACA 10170 0.0 28.541744 2 ATCAACG 15535 0.0 27.920845 3 CAACGCA 15715 0.0 27.49579 5 TCAACGC 15830 0.0 27.348286 4 TATCAAC 16335 0.0 27.00907 2 AACGCAG 16550 0.0 26.383368 6 TACACAT 11745 0.0 25.735268 5 ATACACA 12945 0.0 24.212046 4 ACGCAGA 18325 0.0 23.669504 7 TACATGG 20500 0.0 23.377275 2 GTACATG 21010 0.0 23.301826 1 ACACATC 12430 0.0 22.88662 6 ACATGGG 20475 0.0 22.77978 3 ACATCTC 12595 0.0 22.619276 8 CGCAGAG 19415 0.0 22.340647 8 GTACTAG 1845 0.0 21.066666 1 >>END_MODULE