##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140094_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3728213 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.74392584329275 34.0 31.0 34.0 31.0 34.0 2 32.93927331941603 34.0 31.0 34.0 31.0 34.0 3 33.054383158902134 34.0 33.0 34.0 31.0 34.0 4 36.390145359184146 37.0 37.0 37.0 35.0 37.0 5 36.23890882843872 37.0 37.0 37.0 35.0 37.0 6 36.32101679812822 37.0 37.0 37.0 35.0 37.0 7 36.32601731714363 37.0 37.0 37.0 35.0 37.0 8 36.35535791544099 37.0 37.0 37.0 35.0 37.0 9 38.220403984429 39.0 39.0 39.0 37.0 39.0 10-11 38.144706056225864 39.0 38.0 39.0 37.0 39.0 12-13 38.136109846728175 39.0 38.5 39.0 37.0 39.0 14-15 39.57507510971074 41.0 39.0 41.0 37.0 41.0 16-17 39.57077143929277 41.0 39.0 41.0 37.0 41.0 18-19 39.60928372386449 41.0 39.5 41.0 37.0 41.0 20-21 39.6324904984611 41.0 39.5 41.0 37.0 41.0 22-23 39.58723285083779 41.0 39.0 41.0 37.0 41.0 24-25 39.55406213951498 41.0 39.0 41.0 37.0 41.0 26-27 39.43125070413094 41.0 39.0 41.0 37.0 41.0 28-29 39.365865328571324 40.0 39.0 41.0 36.0 41.0 30-31 39.31770866776425 40.0 39.0 41.0 36.0 41.0 32-33 39.230866598809854 40.0 39.0 41.0 36.0 41.0 34-35 39.18564528252863 40.0 39.0 41.0 35.5 41.0 36-37 39.14279240051974 40.0 39.0 41.0 35.0 41.0 38-39 39.077772810769275 40.0 39.0 41.0 35.0 41.0 40-41 39.0335137927789 40.0 39.0 41.0 35.0 41.0 42-43 39.01502444391471 40.0 38.0 41.0 35.0 41.0 44-45 38.95541923209025 40.0 38.0 41.0 35.0 41.0 46-47 38.84617907010106 40.0 38.0 41.0 35.0 41.0 48-49 38.83226274897268 40.0 38.0 41.0 35.0 41.0 50-51 38.72110554527151 40.0 38.0 41.0 35.0 41.0 52-53 38.56764315062749 40.0 38.0 41.0 35.0 41.0 54-55 38.37769092986877 40.0 37.5 41.0 34.5 41.0 56-57 38.22087098737582 40.0 37.0 41.0 34.0 41.0 58-59 38.06064002959572 39.5 36.5 41.0 34.0 41.0 60-61 37.80216059583347 39.0 36.0 41.0 34.0 41.0 62-63 37.640618005072106 39.0 35.5 41.0 34.0 41.0 64-65 37.35163493812184 39.0 35.0 40.0 33.0 41.0 66-67 37.097186755285044 38.0 35.0 40.0 33.0 41.0 68-69 36.82090902914781 37.0 35.0 40.0 33.0 41.0 70-71 36.35172887466798 37.0 35.0 39.0 33.0 41.0 72-73 36.08164846279574 36.0 35.0 39.0 33.0 41.0 74-75 35.73135629329076 36.0 35.0 38.5 32.0 40.0 76-77 33.97708302500952 34.5 33.0 36.5 30.0 39.0 78-79 34.97592552668209 35.0 34.0 37.0 31.5 39.0 80-81 34.9264951279575 35.0 34.0 36.5 32.0 39.0 82-83 34.6741617402068 35.0 34.0 36.0 32.0 37.5 84-85 34.45941640763401 35.0 34.0 36.0 32.0 37.0 86-87 34.31823662190122 35.0 34.0 35.5 32.0 37.0 88-89 34.173790779495434 35.0 34.0 35.0 31.0 36.5 90-91 34.12456824871902 35.0 34.0 35.0 32.0 36.0 92-93 34.02445044793532 35.0 34.0 35.0 31.5 36.0 94-95 33.891559386698106 35.0 34.0 35.0 31.0 36.0 96-97 33.928608078202515 35.0 34.0 35.0 31.0 35.5 98-99 33.965554169064625 35.0 34.0 35.0 31.0 35.0 100-101 32.73509742778117 34.0 32.0 35.0 28.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 6.0 19 12.0 20 27.0 21 89.0 22 214.0 23 607.0 24 1420.0 25 3058.0 26 5615.0 27 9628.0 28 14375.0 29 20295.0 30 28057.0 31 38273.0 32 51887.0 33 73371.0 34 118355.0 35 200978.0 36 415223.0 37 921486.0 38 1188273.0 39 620562.0 40 16402.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.904435449369444 19.21408460299881 12.398889226554385 23.48259072107736 2 15.293300022906731 21.53385502024858 39.09028094809185 24.08256400875284 3 20.433331151755223 25.752698093551075 30.188257673701003 23.625713080992696 4 12.430298376192562 16.963328007278555 39.60546245614186 31.00091116038703 5 12.763997121409105 38.6733000501849 35.34540542613848 13.21729740226752 6 29.7342439085101 37.48931452851287 18.376570097095296 14.399871465881727 7 26.372286132793377 32.961421463848765 23.078670666080505 17.587621737277352 8 24.905283040427143 33.66232025906245 20.93815455286487 20.494242147645533 9 25.272758094228546 16.971057439866616 21.940866023713244 35.81531844219159 10-11 25.10453433170583 25.47031396644119 28.125495379675076 21.29965632217791 12-13 27.01389880766778 23.29345481294915 28.031884040478005 21.66076233890506 14-15 23.256490441935586 24.835504301926957 27.150071629491123 24.75793362664633 16-17 21.85733486793807 27.774754285766395 27.625956456886986 22.741954389408544 18-19 21.520806348778894 28.70969282066234 28.04312682778586 21.72637400277291 20-21 23.05856493353953 26.703899432090537 27.221767496946867 23.015768137423063 22-23 22.51409222547346 26.443926179668427 27.715784098030444 23.32619749682767 24-25 23.412243228949567 26.4932338862762 27.568147084137255 22.526375800636977 26-27 23.05268060756002 25.957631567097017 28.79504897325206 22.194638852090897 28-29 22.025329077908104 27.785824636863865 28.14897761320233 22.0398686720257 30-31 22.317815167182694 27.0418886834323 27.73927437562662 22.90102177375838 32-33 22.326486523488192 26.96947138542537 27.763269963908616 22.94077212717782 34-35 23.153238511191596 26.86295821354363 27.38333095963612 22.60047231562865 36-37 22.91987415397427 26.314062827666618 28.385983660518853 22.38007935784026 38-39 22.77603755916716 26.906617479254813 28.085422931674398 22.231922029903632 40-41 22.48246351798681 27.184788992945858 28.24867408120813 22.084073407859204 42-43 22.275527438238914 27.437351501445622 27.001545816276874 23.28557524403859 44-45 22.38465192562753 27.23462425167751 26.871884864746292 23.50883895794867 46-47 23.31858321412689 27.157313930431126 26.879967745906796 22.644135109535192 48-49 23.140048332516177 26.900629332141246 27.191096097828282 22.7682262375143 50-51 22.226780722793002 27.034009568577606 27.88643900008883 22.852770708540564 52-53 22.595613878156055 27.494789766799954 26.813846557760986 23.09574979728301 54-55 22.44241351320983 27.103659997909872 26.935412772236848 23.518513716643447 56-57 23.089654026611374 27.034217130770816 26.25598867682791 23.6201401657899 58-59 23.318694987429062 26.93435613882265 26.731470191391082 23.01547868235721 60-61 23.31664999874495 27.09791226023624 27.2140867938537 22.371350947165112 62-63 22.84632022653738 27.283325669619124 27.01895268385955 22.85140141998395 64-65 22.427961722093904 27.753030680292824 26.775795948745174 23.043211648868102 66-67 22.639023213966237 27.415193700362746 26.306724435813067 23.639058649857954 68-69 22.688640986999065 27.24245712854626 26.685108458297268 23.38379342615741 70-71 23.341760404728216 26.582614017489508 26.418600710533674 23.6570248672486 72-73 22.971960928593766 26.689047426845608 27.378243509528055 22.960748135032567 74-75 22.716877167451564 27.475665183649607 26.89533328742178 22.912124361477055 76-77 22.510776135000228 27.140325680831285 26.803050244227787 23.545847939940696 78-79 22.622606861207025 27.050479726514805 26.836996172506634 23.489917239771536 80-81 22.96466085341523 27.102161934343442 26.524011408369617 23.40916580387171 82-83 22.982879170649102 26.69336384439359 27.32267429178779 23.001082693169515 84-85 23.213254923139363 26.914724871737246 26.745857028055305 23.12616317706809 86-87 22.670277227213056 27.38220288810523 27.146624108728666 22.800895775953048 88-89 22.902877379222737 27.00558700962541 26.59500959854047 23.496526012611387 90-91 22.686660246002667 26.939204364509532 26.830194425330227 23.543940964157574 92-93 23.188986700236974 26.986507369526375 26.869890352013705 22.95461557822295 94-95 22.736757869762165 26.74651335554925 27.237434143887835 23.27929463080074 96-97 22.60871194413637 26.95693837626792 27.42014569107296 23.01420398852275 98-99 23.177429093818237 26.621552367147633 27.450465402799402 22.75055313623473 100-101 26.483691968783056 34.40563603697243 28.738992317286282 10.371679676958227 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 456.0 1 514.5 2 1006.5 3 1537.0 4 2283.0 5 4021.5 6 5322.5 7 5857.5 8 5841.5 9 5218.5 10 4398.5 11 3702.0 12 4074.0 13 5773.0 14 9449.0 15 14078.0 16 17587.0 17 19510.5 18 19607.0 19 18240.5 20 16237.0 21 14476.5 22 13612.5 23 14445.0 24 17096.0 25 21139.5 26 27112.0 27 33803.0 28 40064.5 29 47087.0 30 53158.5 31 58366.0 32 65533.5 33 73483.5 34 81939.5 35 90943.0 36 99367.5 37 107170.5 38 112331.0 39 115899.5 40 120409.0 41 123999.0 42 128391.5 43 139933.0 44 157656.0 45 184348.5 46 220591.5 47 258155.0 48 273199.0 49 250502.5 50 213479.0 51 184098.5 52 165365.0 53 155537.0 54 148498.5 55 138656.5 56 129281.0 57 117137.0 58 103627.0 59 90192.0 60 74302.0 61 59920.5 62 48007.0 63 37196.0 64 27309.0 65 20064.0 66 14906.0 67 11570.0 68 9022.5 69 6707.0 70 4984.5 71 3373.0 72 2365.5 73 1649.0 74 1084.5 75 722.5 76 479.5 77 295.0 78 204.0 79 166.5 80 131.5 81 88.0 82 63.0 83 49.5 84 37.5 85 26.5 86 17.5 87 13.0 88 9.5 89 8.0 90 9.0 91 8.0 92 6.5 93 6.0 94 3.5 95 1.0 96 1.0 97 2.0 98 3.0 99 4.0 100 3.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0013679475931230325 3 6.705625456485453E-4 4 0.0 5 0.0 6 5.364500365188363E-4 7 0.0 8 0.0 9 2.6822501825941812E-5 10-11 3.2187002191130175E-4 12-13 4.157487783020981E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 8.06530639897377E-5 28-29 0.0 30-31 5.405563919914949E-5 32-33 2.1731114133848725E-4 34-35 2.7336236806165304E-5 36-37 7.302477289640086E-4 38-39 1.9517300902270878E-4 40-41 2.825160426734832E-5 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 1.5262834402978207E-5 52-53 0.0 54-55 6.600351987342411E-4 56-57 7.987558578757728E-5 58-59 0.0 60-61 0.0010238446821011803 62-63 0.0 64-65 0.0 66-67 6.91431555449613E-5 68-69 0.0 70-71 0.0 72-73 1.272114344906545E-4 74-75 0.0 76-77 3.752298048035794E-5 78-79 7.643515604428194E-5 80-81 0.0 82-83 0.0 84-85 0.0 86-87 3.088873055554411E-4 88-89 1.0494785036367578E-4 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 524.0 20-21 2519.0 22-23 2618.0 24-25 2252.0 26-27 7932.0 28-29 8699.0 30-31 17163.0 32-33 21903.0 34-35 26153.0 36-37 39623.0 38-39 48479.0 40-41 45589.0 42-43 49364.0 44-45 57748.0 46-47 55514.0 48-49 52269.0 50-51 50648.0 52-53 44519.0 54-55 51730.0 56-57 52602.0 58-59 50468.0 60-61 47194.0 62-63 43395.0 64-65 44941.0 66-67 46944.0 68-69 48267.0 70-71 47306.0 72-73 43726.0 74-75 42324.0 76-77 45955.0 78-79 50878.0 80-81 46033.0 82-83 47077.0 84-85 47032.0 86-87 45579.0 88-89 46384.0 90-91 48494.0 92-93 45861.0 94-95 50004.0 96-97 74123.0 98-99 314733.0 100-101 1813647.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.18887463481258 #Duplication Level Percentage of deduplicated Percentage of total 1 89.21217902759199 75.10672956052396 2 7.220704917053805 12.158060420736348 3 1.9930468823123388 5.033771223488927 4 0.7581945223515056 2.5532617436421 5 0.329834758080378 1.3884208549116337 6 0.173353923156657 0.8756683022453237 7 0.1002789150402661 0.5909658304787988 8 0.0602389506357054 0.4057159570561652 9 0.04157721221970464 0.315030483650674 >10 0.10896713832630764 1.3383039678573327 >50 7.132659543050377E-4 0.03506038277473037 >100 8.59962999787835E-4 0.17625460869609128 >500 5.052427726240549E-5 0.02275666393785654 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 5.3645003651883624E-5 0.0 0.0 0.0 0.0 3 5.3645003651883624E-5 0.0 0.0 0.0 0.0 4 5.3645003651883624E-5 0.0 0.0 0.0 0.0 5 5.3645003651883624E-5 0.0 0.0 0.0 0.0 6 5.3645003651883624E-5 0.0 0.0 0.0 0.0 7 5.3645003651883624E-5 0.0 0.0 0.0 0.0 8 5.3645003651883624E-5 0.0 0.0 0.0 0.0 9 5.3645003651883624E-5 0.0 0.0 2.6822501825941812E-5 0.0 10-11 5.3645003651883624E-5 0.0 0.0 8.046750547782544E-5 0.0 12-13 5.3645003651883624E-5 0.0 0.0 1.3411250912970905E-4 0.0 14-15 5.3645003651883624E-5 0.0 0.0 2.145800146075345E-4 0.0 16-17 6.705625456485454E-5 0.0 0.0 4.962162837799234E-4 0.0 18-19 9.387875639079634E-5 0.0 0.0 8.985538111690506E-4 0.0 20-21 1.0729000730376725E-4 0.0 0.0 0.0013813588440360033 0.0 22-23 1.6093501095565087E-4 0.0 0.0 0.002186033898814258 0.0 24-25 1.6093501095565087E-4 0.0 0.0 0.0027761289389849775 0.0 26-27 1.7434626186862176E-4 0.0 0.0 0.003285756473677872 0.0 28-29 2.279912655205054E-4 0.0 0.0 0.004720760321365759 0.0 30-31 2.682250182594181E-4 0.0 0.0 0.006893382969267045 0.0 32-33 2.81636269172389E-4 0.0 0.0 0.011064282003200997 0.0 34-35 2.950475200853599E-4 0.0 0.0 0.015758219822740817 0.0 36-37 3.4869252373724357E-4 2.6822501825941812E-5 0.0 0.020948373926060554 0.0 38-39 3.4869252373724357E-4 2.6822501825941812E-5 0.0 0.0297327432740565 0.0 40-41 3.4869252373724357E-4 2.6822501825941812E-5 0.0 0.039952116469740326 0.0 42-43 3.8892627647615626E-4 2.6822501825941812E-5 0.0 0.0482134470321304 0.0 44-45 4.559825310410108E-4 2.6822501825941812E-5 0.0 0.05701122763103932 0.0 46-47 5.498612874318071E-4 2.6822501825941812E-5 0.0 0.06611746700094656 0.0 48-49 5.900950401707198E-4 2.6822501825941812E-5 0.0 0.07510300511263707 0.0 50-51 5.900950401707198E-4 2.6822501825941812E-5 0.0 0.085282144555582 0.0 52-53 5.900950401707198E-4 2.6822501825941812E-5 0.0 0.09467002019466163 0.0 54-55 5.900950401707198E-4 2.6822501825941812E-5 0.0 0.10415177459013206 0.0 56-57 6.169175419966617E-4 2.6822501825941812E-5 0.0 0.1137676414947322 0.0 58-59 6.437400438226035E-4 2.6822501825941812E-5 0.0 0.12287388086463945 0.0 60-61 6.705625456485453E-4 2.6822501825941812E-5 0.0 0.13181918522359104 0.0 62-63 6.705625456485453E-4 2.6822501825941812E-5 0.0 0.13991958077502548 0.0 64-65 6.705625456485453E-4 2.6822501825941812E-5 0.0 0.14693366500250926 0.0 66-67 6.973850474744871E-4 2.6822501825941812E-5 0.0 0.15421597424825245 0.0 68-69 6.973850474744871E-4 2.6822501825941812E-5 0.0 0.16200791102868856 0.0 70-71 7.510300511263707E-4 2.6822501825941812E-5 0.0 0.16965232404908195 0.0 72-73 7.912638038652834E-4 2.6822501825941812E-5 0.0 0.17595561197817827 0.0 74-75 8.046750547782543E-4 2.6822501825941812E-5 0.0 0.18099824232145534 0.0 76-77 8.180863056912252E-4 2.6822501825941812E-5 0.0 0.1854910113773006 0.0 78-79 8.314975566041962E-4 2.6822501825941812E-5 0.0 0.1896753216621475 0.0 80-81 8.58320058430138E-4 2.6822501825941812E-5 0.0 0.191298083022617 0.0 82-83 8.58320058430138E-4 2.6822501825941812E-5 0.0 0.19200887932100447 0.0 84-85 8.717313093431089E-4 2.6822501825941812E-5 0.0 0.19269285311756595 0.0 86-87 8.985538111690507E-4 2.6822501825941812E-5 0.0 0.19294766688491244 0.0 88-89 9.119650620820216E-4 2.6822501825941812E-5 0.0 0.1930147231394773 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACATGG 13100 0.0 22.432455 2 ACATGGG 13085 0.0 21.974548 3 GTACATG 13640 0.0 21.950317 1 GTACTAG 1305 0.0 20.609035 1 CATGGGG 9095 0.0 19.003948 4 AGAGTAC 12785 0.0 16.720804 10-11 GAGTACT 7140 0.0 16.535046 12-13 ATGGGGG 6180 0.0 16.191874 5 GTCTAGA 1415 0.0 15.93227 1 GAGTACA 9755 0.0 15.56909 1 AGTACAT 9495 0.0 15.245631 2 CGACGAG 580 0.0 15.11038 24-25 AGTACTT 7890 0.0 15.038466 12-13 CAATGCG 580 0.0 15.025541 18-19 TGCGACG 570 0.0 14.983025 22-23 ATGGGCG 555 0.0 14.965505 5 GTACTTT 7875 0.0 14.946462 14-15 CATGGGC 3085 0.0 14.743744 4 TATACTG 1585 0.0 14.722712 5 GGTTCAC 1190 0.0 14.624156 6 >>END_MODULE