##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140093_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4414041 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.809285867530456 34.0 31.0 34.0 31.0 34.0 2 33.007989051302424 34.0 33.0 34.0 31.0 34.0 3 33.11575810011733 34.0 33.0 34.0 31.0 34.0 4 36.47494710629104 37.0 37.0 37.0 35.0 37.0 5 36.341577253133806 37.0 37.0 37.0 35.0 37.0 6 36.36928361109469 37.0 37.0 37.0 35.0 37.0 7 36.37375525057425 37.0 37.0 37.0 35.0 37.0 8 36.385349841562416 37.0 37.0 37.0 35.0 37.0 9 38.283975160176354 39.0 39.0 39.0 37.0 39.0 10-11 38.19528771934832 39.0 39.0 39.0 37.0 39.0 12-13 38.180425374390495 39.0 39.0 39.0 37.0 39.0 14-15 39.706059821374566 41.0 40.0 41.0 38.0 41.0 16-17 39.68086080306006 41.0 40.0 41.0 38.0 41.0 18-19 39.71319308089798 41.0 40.0 41.0 38.0 41.0 20-21 39.727373558120945 41.0 40.0 41.0 38.0 41.0 22-23 39.68084176476869 41.0 40.0 41.0 37.5 41.0 24-25 39.66197024869244 41.0 40.0 41.0 37.0 41.0 26-27 39.55435286774518 41.0 39.5 41.0 37.0 41.0 28-29 39.48856431734424 41.0 39.0 41.0 37.0 41.0 30-31 39.432370351471704 40.5 39.0 41.0 37.0 41.0 32-33 39.35242404131025 40.0 39.0 41.0 36.0 41.0 34-35 39.319300456311 40.0 39.0 41.0 36.0 41.0 36-37 39.28145282124704 40.0 39.0 41.0 36.0 41.0 38-39 39.21992987537945 40.0 39.0 41.0 36.0 41.0 40-41 39.1571279830071 40.0 39.0 41.0 35.0 41.0 42-43 39.1453197590327 40.0 39.0 41.0 35.0 41.0 44-45 39.0861856307822 40.0 39.0 41.0 35.0 41.0 46-47 38.97658843315083 40.0 38.5 41.0 35.0 41.0 48-49 38.963081102968445 40.0 38.5 41.0 35.0 41.0 50-51 38.85856679836982 40.0 38.0 41.0 35.0 41.0 52-53 38.69594298553838 40.0 38.0 41.0 35.0 41.0 54-55 38.496966395757454 40.0 38.0 41.0 34.5 41.0 56-57 38.354550778861935 40.0 37.0 41.0 34.0 41.0 58-59 38.196495634094106 40.0 37.0 41.0 34.0 41.0 60-61 37.96225227625963 39.5 36.5 41.0 34.0 41.0 62-63 37.79584687987713 39.0 36.0 41.0 34.0 41.0 64-65 37.51546927768901 39.0 35.5 40.5 33.5 41.0 66-67 37.26404915194499 38.5 35.0 40.0 33.0 41.0 68-69 36.98762996068092 37.5 35.0 40.0 33.0 41.0 70-71 36.529725965197116 37.0 35.0 39.5 33.0 41.0 72-73 36.255465176209555 36.5 35.0 39.0 33.0 41.0 74-75 35.88623411665341 36.0 35.0 39.0 32.5 40.5 76-77 34.096067962301305 34.5 33.0 36.5 30.0 39.0 78-79 35.10140029220899 35.0 34.0 37.0 31.5 39.0 80-81 35.02630494487357 35.0 34.0 37.0 32.0 39.0 82-83 34.76128905870369 35.0 34.0 36.0 32.0 38.5 84-85 34.52399775356952 35.0 34.0 36.0 32.0 37.0 86-87 34.33900946490126 35.0 34.0 36.0 31.5 37.0 88-89 34.178949041506655 35.0 34.0 35.0 31.0 36.5 90-91 34.11880515375867 35.0 34.0 35.0 31.5 36.0 92-93 33.99932378983377 35.0 34.0 35.0 31.0 36.0 94-95 33.8530960256208 35.0 34.0 35.0 31.0 36.0 96-97 33.88296916966879 35.0 34.0 35.0 31.0 35.5 98-99 33.91681517556715 35.0 34.0 35.0 31.0 35.0 100-101 32.68226229248198 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 12.0 20 18.0 21 46.0 22 185.0 23 523.0 24 1581.0 25 3578.0 26 6715.0 27 11352.0 28 16942.0 29 24462.0 30 33991.0 31 45353.0 32 61258.0 33 86291.0 34 135973.0 35 230703.0 36 485024.0 37 1096262.0 38 1471141.0 39 685134.0 40 17495.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.37284134877768 19.30910927198003 12.511347311907613 24.806702067334673 2 15.343652829932203 20.740760878799723 40.071364246512495 23.84422204475558 3 18.7592814989863 25.437089929073775 29.915883990636203 25.887744581303725 4 12.473354914465 17.11882603718452 38.741710826881764 31.66610822146872 5 13.27223738972973 37.69797335366844 35.69339297029638 13.336396286305451 6 30.911546723685063 37.527520302382364 18.3563531968861 13.20457977704647 7 27.090573014614044 32.18937023919805 22.92108297136343 17.798973774824475 8 25.272964161411277 35.85317852734037 20.95392861099387 17.919928700254484 9 25.96268406328082 15.994965155495908 20.635975350467 37.40637543075628 10-11 24.68506090129016 26.13958271220753 28.80021377299827 20.37514261350404 12-13 25.432681029161742 23.529664968630065 28.88358331901343 22.154070683194764 14-15 22.38334442294487 25.02930987727572 26.316667652158195 26.270678047621214 16-17 22.401649644849243 28.065643250708366 26.897835792644425 22.634871311797966 18-19 22.23758229703802 27.60496560861125 28.236620366688935 21.920831727661795 20-21 23.06842763205966 26.951935205959206 27.97392877028283 22.005708391698306 22-23 22.82997425740779 26.718839226634515 27.735105100477686 22.716081415479998 24-25 22.581799661688244 26.819366319371646 27.99053787851829 22.608296140421817 26-27 22.617224977476845 27.009690482503927 27.848038124808483 22.525046415210745 28-29 22.4694470783985 27.27241786090862 27.86154621460527 22.39658884608761 30-31 22.813073622827904 27.095885416808724 27.66657620529549 22.424464755067884 32-33 22.524686275906276 27.254263941314722 27.698038601239226 22.523011181539776 34-35 22.59123053027719 27.284455290290733 27.652315029271552 22.471999150160528 36-37 22.6558732575464 27.108482059330424 27.69788108264159 22.537763600481586 38-39 22.491916036312215 27.27423460984331 27.800683676327438 22.433165677517035 40-41 22.787132077965413 27.12091149415652 27.694436589411282 22.39751983846679 42-43 22.65055960415211 27.28528180806199 27.48665736818412 22.57750121960178 44-45 22.71733268109343 27.48566034892458 27.26872640414011 22.528280565841882 46-47 22.723574144441013 27.26972821515872 27.137565449161787 22.869132191238478 48-49 22.73436004015257 27.204411780241045 27.349076635338804 22.712151544267577 50-51 22.587764197926298 27.429538939173554 27.20918002267257 22.77351684022758 52-53 22.782897284607635 27.413302659637772 26.99308739637813 22.81071265937646 54-55 22.855692190282625 27.274710650723932 27.020593896796967 22.84900326219648 56-57 22.832070908825646 27.300188400515623 27.04741718240492 22.82032350825381 58-59 22.754408913602937 27.429125065333555 27.138376398367804 22.67808962269571 60-61 22.907129599842257 27.335709526801473 27.030729856843827 22.726431016512443 62-63 22.782646204496178 27.366044953419756 27.019164116545287 22.832144725538786 64-65 22.691128759248695 27.463963507082163 26.988833725652402 22.856074008016744 66-67 22.760927895706462 27.447245639979013 26.859212486124985 22.932613978189544 68-69 22.800713201416382 27.43249644463008 26.997234607557445 22.76955574639609 70-71 22.8178643413366 27.108860625683505 26.909142228487326 23.164132804492567 72-73 22.878464119451987 27.197384011203035 27.034484165186868 22.889667704158114 74-75 22.642119335586315 27.42981027997863 26.985010077112726 22.94306030732233 76-77 22.735995996058055 27.262341330978163 26.910404190161312 23.091258482802466 78-79 22.856677367962906 27.293009169057626 26.887587641421103 22.96272582155837 80-81 22.733607845960872 27.33871902155492 26.86887214673213 23.058800985752075 82-83 22.89805661128807 27.254091594564038 26.986831451520764 22.86102034262712 84-85 23.101250194072115 27.176261838398926 26.849392646700032 22.87309532082893 86-87 22.67877712360385 27.298707327647552 26.966429010023724 23.056086538724873 88-89 22.900716156982874 27.116470155680105 27.000621677729658 22.98219200960736 90-91 22.94808433071685 27.245605169642133 26.90407311050757 22.902237389133447 92-93 22.957968042077315 27.238642025972887 26.900549703951015 22.902840227998787 94-95 22.75161507538706 27.377378945289955 26.925211630567958 22.945794348755026 96-97 22.715839405732392 27.301598439654835 27.048455966100892 22.93410618851188 98-99 23.136436980716475 27.80626394957555 27.071673347421832 21.985625722286148 100-101 27.355520480585398 35.03792195040927 27.51741274221769 10.08914482678764 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 527.0 1 510.0 2 808.0 3 1212.0 4 1761.5 5 3033.5 6 4054.0 7 4586.0 8 4789.5 9 4457.5 10 3853.5 11 3407.5 12 3827.5 13 5314.5 14 8358.5 15 12203.5 16 15188.5 17 16810.0 18 17103.5 19 16399.0 20 15320.5 21 14572.0 22 14999.0 23 17222.0 24 21296.0 25 27361.5 26 35543.5 27 44487.5 28 52428.0 29 60086.0 30 66087.5 31 71647.0 32 79172.5 33 87017.0 34 96554.5 35 107796.0 36 119789.0 37 129644.0 38 135780.5 39 141139.5 40 149853.5 41 158684.5 42 165320.0 43 172469.5 44 180916.5 45 190589.0 46 197103.0 47 200354.0 48 201917.0 49 202081.5 50 201332.0 51 199580.5 52 192603.5 53 182979.5 54 174748.5 55 163236.0 56 149805.0 57 136606.5 58 123714.0 59 109131.5 60 91390.0 61 73915.0 62 58597.5 63 44956.5 64 33842.5 65 25233.0 66 18505.5 67 13580.0 68 9732.0 69 6963.5 70 5076.5 71 3639.0 72 2467.5 73 1684.5 74 1116.0 75 760.5 76 561.5 77 384.0 78 258.0 79 175.0 80 115.0 81 75.5 82 53.0 83 38.0 84 26.0 85 14.0 86 7.5 87 6.5 88 5.0 89 4.0 90 4.0 91 3.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 1.0 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0014952285218918448 3 4.07789596879594E-4 4 0.0 5 0.0 6 6.11684395319391E-4 7 0.0 8 0.0 9 4.5309955208843774E-5 10-11 2.945147088574846E-4 12-13 4.870820184950706E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 3.401003477412689E-5 28-29 1.1345098730154444E-5 30-31 4.545795480115554E-5 32-33 3.0766944723879206E-4 34-35 6.860916753409618E-5 36-37 7.929845006007719E-4 38-39 1.38944289708107E-4 40-41 4.670207462290994E-5 42-43 0.0 44-45 0.0 46-47 1.2013703310544138E-5 48-49 0.0 50-51 1.8401033598324575E-4 52-53 0.0 54-55 6.001245258391117E-4 56-57 1.1368439242134366E-4 58-59 0.0 60-61 8.516749930801408E-4 62-63 0.0 64-65 0.0 66-67 3.9942461552717925E-5 68-69 0.0 70-71 0.0 72-73 1.5158578715123038E-4 74-75 0.0 76-77 1.409044686020459E-5 78-79 1.2828425510321892E-4 80-81 0.0 82-83 0.0 84-85 0.0 86-87 6.285457650905981E-4 88-89 9.093278854489352E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 177.0 20-21 744.0 22-23 969.0 24-25 1236.0 26-27 2515.0 28-29 5924.0 30-31 11388.0 32-33 14178.0 34-35 19321.0 36-37 30201.0 38-39 36429.0 40-41 34538.0 42-43 38573.0 44-45 44436.0 46-47 44725.0 48-49 42823.0 50-51 39135.0 52-53 37599.0 54-55 40237.0 56-57 42160.0 58-59 41571.0 60-61 40985.0 62-63 38592.0 64-65 39739.0 66-67 41944.0 68-69 42697.0 70-71 42840.0 72-73 40106.0 74-75 39889.0 76-77 40017.0 78-79 42404.0 80-81 43198.0 82-83 41335.0 84-85 40196.0 86-87 41273.0 88-89 44122.0 90-91 46211.0 92-93 47223.0 94-95 50476.0 96-97 78288.0 98-99 361590.0 100-101 2682037.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.59959740507004 #Duplication Level Percentage of deduplicated Percentage of total 1 89.96766264507458 77.01195701893543 2 7.117499650080101 12.185102091551672 3 1.6916042366667388 4.344019248821509 4 0.5840654830779222 1.9998308083867156 5 0.25734790455167716 1.1014438511330982 6 0.14103165315019722 0.7243351638617015 7 0.0702951215345036 0.42120638720257836 8 0.04367998020354669 0.29911909760680205 9 0.032132867090554164 0.24755044377798543 >10 0.09023866082257179 1.191643728262747 >50 0.002865986417725528 0.16580927726435998 >100 0.001534632353974695 0.2657897852942658 >500 0.0 0.0 >1k 4.1178975812924155E-5 0.04219309790113891 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 2.265497760442189E-5 0.0 0.0 0.0 0.0 3 2.265497760442189E-5 0.0 0.0 0.0 2.265497760442189E-5 4 2.265497760442189E-5 0.0 0.0 0.0 2.265497760442189E-5 5 2.265497760442189E-5 2.265497760442189E-5 0.0 0.0 2.265497760442189E-5 6 2.265497760442189E-5 2.265497760442189E-5 0.0 0.0 2.265497760442189E-5 7 2.265497760442189E-5 2.265497760442189E-5 0.0 0.0 2.265497760442189E-5 8 2.265497760442189E-5 2.265497760442189E-5 0.0 0.0 2.265497760442189E-5 9 2.265497760442189E-5 2.265497760442189E-5 0.0 0.0 2.265497760442189E-5 10-11 2.265497760442189E-5 2.265497760442189E-5 0.0 2.265497760442189E-5 2.265497760442189E-5 12-13 2.265497760442189E-5 2.265497760442189E-5 0.0 5.663744401105472E-5 2.265497760442189E-5 14-15 2.265497760442189E-5 2.265497760442189E-5 0.0 1.1327488802210945E-4 2.265497760442189E-5 16-17 2.265497760442189E-5 2.265497760442189E-5 0.0 1.5858484323095324E-4 2.265497760442189E-5 18-19 2.265497760442189E-5 2.265497760442189E-5 0.0 2.265497760442189E-4 2.265497760442189E-5 20-21 2.265497760442189E-5 4.530995520884378E-5 0.0 3.8513461927517213E-4 2.265497760442189E-5 22-23 2.265497760442189E-5 4.530995520884378E-5 0.0 6.569943505282348E-4 2.265497760442189E-5 24-25 2.265497760442189E-5 4.530995520884378E-5 0.0 9.515090593857193E-4 2.265497760442189E-5 26-27 2.265497760442189E-5 4.530995520884378E-5 0.0 0.0012346962794409929 2.265497760442189E-5 28-29 2.265497760442189E-5 4.530995520884378E-5 0.0 0.0018916906299692277 2.265497760442189E-5 30-31 2.265497760442189E-5 4.530995520884378E-5 0.0 0.0032849717526411736 2.265497760442189E-5 32-33 2.265497760442189E-5 4.530995520884378E-5 0.0 0.006060206509182855 2.265497760442189E-5 34-35 2.265497760442189E-5 4.530995520884378E-5 0.0 0.009617037993077091 2.265497760442189E-5 36-37 2.265497760442189E-5 4.530995520884378E-5 0.0 0.014691752976467593 2.265497760442189E-5 38-39 2.265497760442189E-5 4.530995520884378E-5 0.0 0.02171479603383838 2.265497760442189E-5 40-41 2.265497760442189E-5 4.530995520884378E-5 0.0 0.029440143396946245 2.265497760442189E-5 42-43 2.265497760442189E-5 4.530995520884378E-5 0.0 0.03704088838322979 2.265497760442189E-5 44-45 2.265497760442189E-5 4.530995520884378E-5 0.0 0.04510606041040398 2.265497760442189E-5 46-47 2.265497760442189E-5 4.530995520884378E-5 0.0 0.05429265382899706 2.265497760442189E-5 48-49 2.265497760442189E-5 4.530995520884378E-5 0.0 0.06275428796424863 2.265497760442189E-5 50-51 2.265497760442189E-5 4.530995520884378E-5 0.0 0.07112530218908253 2.265497760442189E-5 52-53 2.265497760442189E-5 5.663744401105472E-5 0.0 0.07993808847720263 2.265497760442189E-5 54-55 2.265497760442189E-5 9.061991041768756E-5 0.0 0.08795795054916798 2.265497760442189E-5 56-57 2.265497760442189E-5 1.1327488802210945E-4 0.0 0.09590984768832006 2.265497760442189E-5 58-59 2.265497760442189E-5 1.3592986562653133E-4 0.0 0.10356723011861466 2.265497760442189E-5 60-61 2.265497760442189E-5 1.3592986562653133E-4 0.0 0.11057894568718324 2.265497760442189E-5 62-63 2.265497760442189E-5 1.3592986562653133E-4 0.0 0.1172621640804877 2.265497760442189E-5 64-65 2.265497760442189E-5 1.3592986562653133E-4 0.0 0.12318644072404403 2.265497760442189E-5 66-67 2.265497760442189E-5 1.3592986562653133E-4 0.0 0.1297790392069308 2.265497760442189E-5 68-69 2.265497760442189E-5 1.3592986562653133E-4 0.0 0.13626969029059766 2.265497760442189E-5 70-71 2.265497760442189E-5 1.4725735442874227E-4 0.0 0.14291892621749547 2.265497760442189E-5 72-73 2.265497760442189E-5 1.5858484323095321E-4 0.0 0.14817488102172138 4.530995520884378E-5 74-75 2.265497760442189E-5 1.5858484323095321E-4 0.0 0.1525472916993748 4.530995520884378E-5 76-77 2.265497760442189E-5 1.5858484323095321E-4 0.0 0.15561704116477396 4.530995520884378E-5 78-79 2.265497760442189E-5 1.5858484323095321E-4 0.0 0.15881139300699745 4.530995520884378E-5 80-81 2.265497760442189E-5 1.8123982083537512E-4 0.0 0.16043122390571363 5.663744401105472E-5 82-83 2.265497760442189E-5 1.8123982083537512E-4 0.0 0.16086166848019762 6.796493281326567E-5 84-85 2.265497760442189E-5 1.8123982083537512E-4 0.0 0.161258130588275 7.929242161547662E-5 86-87 2.265497760442189E-5 1.8123982083537512E-4 0.0 0.1613827329650993 9.061991041768756E-5 88-89 2.265497760442189E-5 1.8123982083537512E-4 0.0 0.16139406045390153 9.061991041768756E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACATGG 11260 0.0 23.173574 2 GGTATCA 8100 0.0 23.136072 1 CAACGCA 10145 0.0 22.614412 5 ATCAACG 10170 0.0 22.60014 3 TCAACGC 10275 0.0 22.328295 4 ACATGGG 11315 0.0 22.16994 3 GTACATG 11990 0.0 22.11312 1 AACGCAG 10570 0.0 21.904144 6 GTATCAA 11415 0.0 21.276087 1 CATGGGG 8710 0.0 19.007404 4 ACGCAGA 12170 0.0 18.920593 7 TATCAAC 13240 0.0 18.21645 2 CGCAGAG 12600 0.0 18.174845 8 ATTATAC 2415 0.0 17.573124 3 ACTATCG 375 0.0 17.367619 10-11 AGAGTAC 10595 0.0 17.132574 10-11 GAGTACT 6685 0.0 16.907845 12-13 GAGTACA 7815 0.0 16.34498 1 GTATAAT 2555 0.0 16.281115 1 CAGAGTA 11695 0.0 16.11395 10-11 >>END_MODULE