##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140092_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6189112 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.76972560845562 34.0 31.0 34.0 31.0 34.0 2 32.9797171225856 34.0 33.0 34.0 31.0 34.0 3 33.08614547612 34.0 33.0 34.0 31.0 34.0 4 36.45565034208462 37.0 37.0 37.0 35.0 37.0 5 36.31543151909353 37.0 37.0 37.0 35.0 37.0 6 36.342206604113805 37.0 37.0 37.0 35.0 37.0 7 36.34804993026463 37.0 37.0 37.0 35.0 37.0 8 36.36387190924966 37.0 37.0 37.0 35.0 37.0 9 38.27406161013082 39.0 39.0 39.0 37.0 39.0 10-11 38.18286872171646 39.0 39.0 39.0 37.0 39.0 12-13 38.16621495943198 39.0 39.0 39.0 37.0 39.0 14-15 39.66167812119089 41.0 40.0 41.0 37.5 41.0 16-17 39.63176066291901 41.0 40.0 41.0 37.0 41.0 18-19 39.6815837231577 41.0 40.0 41.0 37.5 41.0 20-21 39.70526108251205 41.0 40.0 41.0 37.5 41.0 22-23 39.64620059512824 41.0 40.0 41.0 37.0 41.0 24-25 39.62014232416558 41.0 40.0 41.0 37.0 41.0 26-27 39.50750535949882 41.0 39.0 41.0 37.0 41.0 28-29 39.4456978654909 41.0 39.0 41.0 37.0 41.0 30-31 39.384104638248154 40.0 39.0 41.0 36.5 41.0 32-33 39.28639626925953 40.0 39.0 41.0 36.0 41.0 34-35 39.22489761940207 40.0 39.0 41.0 36.0 41.0 36-37 39.20004807787498 40.0 39.0 41.0 35.5 41.0 38-39 39.11362485577829 40.0 39.0 41.0 35.0 41.0 40-41 39.074881210247455 40.0 39.0 41.0 35.0 41.0 42-43 39.067734342820856 40.0 39.0 41.0 35.0 41.0 44-45 39.0023458344412 40.0 39.0 41.0 35.0 41.0 46-47 38.89559618775636 40.0 38.0 41.0 35.0 41.0 48-49 38.88529047453849 40.0 38.0 41.0 35.0 41.0 50-51 38.74003370195693 40.0 38.0 41.0 35.0 41.0 52-53 38.57863653738602 40.0 38.0 41.0 35.0 41.0 54-55 38.347297094417684 40.0 37.5 41.0 34.5 41.0 56-57 38.17615169395566 40.0 37.0 41.0 34.0 41.0 58-59 38.00723267568813 39.5 36.5 41.0 34.0 41.0 60-61 37.73236861409454 39.0 36.0 41.0 33.5 41.0 62-63 37.560133168429715 39.0 35.5 41.0 33.5 41.0 64-65 37.30720589796629 38.5 35.0 40.0 33.0 41.0 66-67 37.07803440359359 38.0 35.0 40.0 33.0 41.0 68-69 36.82657494116907 37.0 35.0 40.0 33.0 41.0 70-71 36.387629352638015 37.0 35.0 39.0 33.0 41.0 72-73 36.12754956424356 36.0 35.0 39.0 33.0 41.0 74-75 35.7764629176102 36.0 35.0 39.0 32.5 40.0 76-77 34.016041470412006 34.5 33.0 36.5 30.0 39.0 78-79 35.02798368404767 35.0 34.0 37.0 31.5 39.0 80-81 34.972224185960236 35.0 34.0 37.0 32.0 39.0 82-83 34.724490104279695 35.0 34.0 36.0 32.0 38.0 84-85 34.49966123206832 35.0 34.0 36.0 32.0 37.0 86-87 34.33324117165961 35.0 34.0 35.5 32.0 37.0 88-89 34.1822926064908 35.0 34.0 35.0 31.5 36.5 90-91 34.12859654759558 35.0 34.0 35.0 32.0 36.0 92-93 34.016295138701864 35.0 34.0 35.0 31.5 36.0 94-95 33.87728301258205 35.0 34.0 35.0 31.0 36.0 96-97 33.907886139587625 35.0 34.0 35.0 31.0 35.5 98-99 33.94045247423425 35.0 34.0 35.0 31.0 35.0 100-101 32.68630360952286 34.0 31.5 35.0 28.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 7.0 19 13.0 20 27.0 21 89.0 22 310.0 23 916.0 24 2357.0 25 5263.0 26 9684.0 27 16077.0 28 23853.0 29 34245.0 30 46531.0 31 61940.0 32 84591.0 33 120493.0 34 195253.0 35 332292.0 36 707566.0 37 1573976.0 38 1988835.0 39 960828.0 40 23964.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.437218780335535 19.87808590311502 12.72069401878654 24.964001297762913 2 15.174046273922425 20.463401688313894 40.573580771738314 23.788971266025367 3 18.22460318845244 26.37915400728121 30.40235033164843 24.99389247261792 4 12.274345657341474 17.628991041041107 37.77945850713317 32.31720479448425 5 12.942147435690291 38.019638358459176 35.67041604676083 13.367798159089705 6 30.304021296888887 37.452458550739344 18.21886734895517 14.0246528034166 7 26.687592662727706 32.150880449408575 22.50830167558771 18.65322521227601 8 25.471456971533236 35.36644675358921 21.207436543400735 17.954659731476827 9 25.756380843710836 15.691930553515682 20.32434060400597 38.22734799876751 10-11 24.651592504163375 25.991692800022747 28.47244562164157 20.884269074172305 12-13 25.527412116292414 23.274366110160333 28.374390540254073 22.823831233293177 14-15 22.733228934942527 24.794090008388924 25.460372990503323 27.012308066165225 16-17 22.632051253879393 28.18359887492745 26.057663845798878 23.12668602539427 18-19 22.550779497931206 27.03291683847376 27.812810626144753 22.603493037450285 20-21 23.123910208359355 26.224796131907226 27.39606310421781 23.255230555515606 22-23 22.983014274402773 26.668422284691484 27.376086106842152 22.972477334063594 24-25 22.929659556615142 26.85699202122565 27.594172547168007 22.6191758749912 26-27 22.76326070778481 26.98529527683985 27.67809927193895 22.573344743436394 28-29 22.152552288187227 26.57024769983761 28.202090637442943 23.07510937453222 30-31 22.71470533558835 26.457772292571352 27.397519706976908 23.43000266486339 32-33 22.978443047736096 26.65607722382773 27.941896701451718 22.423583026984456 34-35 22.71449596942931 27.266948503820316 27.78938558547892 22.22916994127145 36-37 22.508418795526104 26.856185612853906 27.46994654033019 23.165449051289798 38-39 22.57691832053753 26.562095295066886 27.895982046973376 22.965004337422208 40-41 22.5714257037182 26.4186360070192 28.28237889957828 22.72755938968432 42-43 22.925148583028815 26.37884822674715 28.033662911542322 22.662340278681715 44-45 22.438696198177222 27.10625827164278 27.649798046557567 22.805247483622434 46-47 23.142088792882777 26.41464255098719 27.03022375188932 23.413044904240714 48-49 23.063561198334373 26.314966487966206 27.190079863013842 23.43139245068558 50-51 22.463275091656996 26.6473681221762 27.57866707836895 23.310689707797856 52-53 22.615527621667724 26.99142324027994 27.69679020340414 22.6962589346482 54-55 22.6497770986623 26.97497448172761 27.10713208025392 23.268116339356165 56-57 23.211550341706204 27.27952515589223 26.57423766326909 22.934686839132475 58-59 22.469714111380885 27.67598567005075 27.43764856928572 22.41665164928264 60-61 23.07187443243373 28.29195081967369 26.112344441152118 22.523830306740464 62-63 22.6520461711841 28.54260490093915 26.18010451140681 22.62524441646994 64-65 22.53579211790703 28.10052365064636 26.45825001263612 22.9054342188105 66-67 22.8071054170412 27.6980656644925 26.449481942079604 23.045346976386693 68-69 22.87754950272699 27.421894702702858 26.68466041371918 23.015895380850974 70-71 22.983038728110117 26.8499013874738 26.76351602967319 23.403543854742892 72-73 23.010386383693067 27.02494273415959 26.795156874267295 23.16951400788005 74-75 22.840315468977526 27.238040504533128 26.786011289539697 23.135632736949653 76-77 22.94116313104352 27.106550397340467 26.68047648828431 23.2718099833317 78-79 22.96682304918124 27.071964825645207 26.699195972728106 23.262016152445444 80-81 22.892659699899333 27.097107837558 26.759348172245716 23.250884290296952 82-83 23.25365440931066 26.907576043115565 26.85342709584173 22.985342451732045 84-85 23.333809207065542 26.851508754636928 26.655608664478557 23.159073373818973 86-87 22.864970277715706 27.070334383909874 26.945795713477157 23.118899624897267 88-89 23.166539963787375 26.858083499496892 26.774906235582236 23.200470301133496 90-91 23.2231260572548 26.768186088958636 26.80507532185143 23.203612531935136 92-93 23.278196763436416 26.840442940883253 26.80698231791432 23.074377977766012 94-95 23.054098939386964 26.855765836288008 26.894432932725515 23.195702291599517 96-97 22.98993832797652 26.810242515269202 27.009892858317407 23.189926298436873 98-99 23.333310811881866 27.38175393425936 26.931385539617008 22.353549714241762 100-101 27.87772692048236 34.3998836324712 27.42529915898781 10.297090288058627 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 504.0 1 575.0 2 1323.0 3 2174.0 4 3270.5 5 5817.5 6 7758.5 7 8669.0 8 8852.5 9 8070.5 10 6882.0 11 5855.5 12 6610.0 13 9456.0 14 15577.0 15 23377.0 16 29150.0 17 32085.0 18 32160.0 19 29845.5 20 26495.5 21 23336.5 22 21919.5 23 23683.0 24 28638.0 25 36507.0 26 47226.0 27 58776.5 28 68814.5 29 80265.5 30 91186.5 31 99684.5 32 110786.5 33 123734.5 34 137122.5 35 152209.0 36 169959.0 37 184155.0 38 189981.5 39 194612.5 40 202241.0 41 207670.0 42 211553.5 43 221024.5 44 234036.0 45 248655.0 46 264003.0 47 279546.0 48 309470.5 49 323526.5 50 311254.0 51 308047.5 52 301750.5 53 286378.0 54 269128.5 55 248460.5 56 229538.5 57 212402.5 58 192497.0 59 167312.0 60 138999.5 61 111438.0 62 86402.0 63 66424.5 64 50490.0 65 37260.0 66 27400.0 67 20594.5 68 15392.0 69 11476.5 70 8510.5 71 6138.5 72 4345.0 73 3031.5 74 2134.5 75 1431.0 76 1011.5 77 715.0 78 483.0 79 310.5 80 215.0 81 167.0 82 135.5 83 98.5 84 62.0 85 32.5 86 19.0 87 13.5 88 11.5 89 9.5 90 6.5 91 4.0 92 3.0 93 1.5 94 0.0 95 0.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0015672684546668406 3 4.524073889759953E-4 4 0.0 5 0.0 6 6.301388632165648E-4 7 0.0 8 0.0 9 1.615740674914269E-5 10-11 3.7162035523028185E-4 12-13 3.877777619794245E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 5.659235443759246E-5 28-29 8.091327787699094E-6 30-31 4.05363904906168E-5 32-33 1.8705396270973527E-4 34-35 1.6330493923137428E-5 36-37 6.569602433117958E-4 38-39 1.6566084305300011E-4 40-41 5.854905243795327E-5 42-43 0.0 44-45 0.0 46-47 4.326849894913797E-5 48-49 0.0 50-51 1.153474891912748E-4 52-53 0.0 54-55 6.808457484042563E-4 56-57 3.6826735915660885E-5 58-59 0.0 60-61 9.778777470532177E-4 62-63 9.647858937496731E-6 64-65 0.0 66-67 1.9995091205109147E-5 68-69 0.0 70-71 0.0 72-73 6.282589624805842E-5 74-75 2.121455445723093E-5 76-77 1.0747499325594417E-5 78-79 4.357574264776453E-5 80-81 0.0 82-83 0.0 84-85 1.1366409509229126E-5 86-87 4.3794639559167767E-4 88-89 9.353633524170841E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 205.0 20-21 859.0 22-23 1253.0 24-25 1617.0 26-27 3800.0 28-29 9575.0 30-31 18577.0 32-33 22810.0 34-35 30758.0 36-37 48144.0 38-39 59630.0 40-41 57693.0 42-43 62934.0 44-45 74252.0 46-47 74300.0 48-49 70951.0 50-51 64836.0 52-53 61870.0 54-55 73123.0 56-57 81627.0 58-59 82551.0 60-61 84792.0 62-63 87021.0 64-65 89160.0 66-67 92684.0 68-69 74867.0 70-71 68690.0 72-73 61815.0 74-75 61284.0 76-77 61673.0 78-79 64439.0 80-81 65957.0 82-83 61528.0 84-85 60224.0 86-87 61245.0 88-89 65503.0 90-91 69310.0 92-93 68190.0 94-95 70579.0 96-97 103745.0 98-99 465397.0 100-101 3449644.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.93880096825397 #Duplication Level Percentage of deduplicated Percentage of total 1 88.36001085831789 72.40113343272469 2 7.472413699105163 12.24561237686865 3 2.1758084627847376 5.348494097314837 4 0.8790062577630647 2.8809887521879003 5 0.43616503801274165 1.7869420119518482 6 0.23032658277488854 1.13236104142138 7 0.13176576766728978 0.7557710307923478 8 0.08438913913774286 0.5531795900551844 9 0.05766128803023072 0.4252227123134016 >10 0.1694209740734785 1.9888422008557862 >50 0.0016512966376100412 0.08870025524260831 >100 9.956324280550569E-4 0.15546391502709175 >500 3.150026771247562E-4 0.16106027416175447 >1k 7.000059004724923E-5 0.07622830908255171 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 3.231481349828537E-5 0.0 0.0 0.0 5 0.0 3.231481349828537E-5 0.0 0.0 0.0 6 0.0 3.231481349828537E-5 0.0 0.0 0.0 7 0.0 3.231481349828537E-5 0.0 0.0 0.0 8 0.0 3.231481349828537E-5 0.0 0.0 0.0 9 0.0 3.231481349828537E-5 0.0 0.0 0.0 10-11 0.0 3.231481349828537E-5 0.0 8.078703374571343E-6 0.0 12-13 0.0 3.231481349828537E-5 0.0 3.231481349828537E-5 0.0 14-15 0.0 6.462962699657075E-5 0.0 7.270833037114209E-5 0.0 16-17 0.0 6.462962699657075E-5 0.0 9.694444049485613E-5 0.0 18-19 0.0 6.462962699657075E-5 0.0 1.3733795736771285E-4 0.0 20-21 0.0 6.462962699657075E-5 0.0 1.9388888098971225E-4 0.0 22-23 0.0 7.270833037114209E-5 0.0 3.796990586048532E-4 0.0 24-25 0.0 8.886573712028478E-5 0.0 6.947684902131356E-4 0.0 26-27 0.0 9.694444049485613E-5 0.0 8.482638543299911E-4 0.0 28-29 0.0 9.694444049485613E-5 0.0 0.001712685115409125 0.0 30-31 0.0 1.454166607422842E-4 0.0 0.003570786891560534 0.0 32-33 0.0 1.454166607422842E-4 0.0 0.006366018259162219 0.0 34-35 0.0 1.9388888098971225E-4 0.0 0.009726758862983898 0.0 36-37 0.0 2.4236110123714033E-4 0.0 0.014662846624846989 0.0 38-39 0.0 2.4236110123714033E-4 0.0 0.022886966660160615 0.0 40-41 0.0 2.58518507986283E-4 0.0 0.031781619075563664 0.0 42-43 0.0 2.746759147354257E-4 0.0 0.03987647985688415 0.0 44-45 0.0 2.9891202485913973E-4 0.0 0.048577243391297494 0.0 46-47 0.0 3.0699072823371106E-4 0.0 0.05771425690793768 0.0 48-49 0.0 3.0699072823371106E-4 0.0 0.06722289077980814 0.0 50-51 0.0 3.393055417319964E-4 0.0 0.0768527052022972 0.0 52-53 0.0 3.393055417319964E-4 0.0 0.0856746492873291 0.0 54-55 0.0 3.393055417319964E-4 0.0 0.09422999616100015 0.0 56-57 0.0 3.393055417319964E-4 0.0 0.10340740319451319 0.0 58-59 0.0 3.393055417319964E-4 0.0 0.11244747227065854 0.0 60-61 0.0 3.7162035523028185E-4 0.0 0.12126941635569044 0.0 62-63 0.0 3.877777619794245E-4 0.0 0.1293723558403855 0.0 64-65 0.0 4.524073889759953E-4 0.0 0.1368209203517403 0.0 66-67 0.0 4.8472220247428065E-4 0.0 0.14531971630178933 0.0 68-69 0.0 4.8472220247428065E-4 0.0 0.15312374376162524 0.0 70-71 0.0 4.8472220247428065E-4 0.0 0.16047536383248517 0.0 72-73 0.0 5.089583125979947E-4 0.0 0.16621932193180539 0.0 74-75 0.0 5.331944227217087E-4 0.0 0.17037985416970963 0.0 76-77 0.0 5.4127312609628E-4 0.0 0.17409605772201248 0.0 78-79 0.0 5.493518294708514E-4 0.0 0.17796575663843212 0.0 80-81 0.0 5.493518294708514E-4 0.0 0.1798884880415801 0.0 82-83 0.0 5.493518294708514E-4 0.0 0.18072867319253555 0.0 84-85 0.0 5.493518294708514E-4 0.0 0.18135073335237753 0.0 86-87 0.0 5.493518294708514E-4 0.0 0.18156077964011638 0.0 88-89 0.0 5.816666429691368E-4 0.0 0.1816092518603638 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 9775 0.0 49.157265 1 TATACAC 10995 0.0 45.15016 3 TTATACA 11825 0.0 41.11863 2 TACACAT 15545 0.0 31.802948 5 GGTATCA 11325 0.0 30.857702 1 ATACACA 16730 0.0 30.62399 4 ACACATC 16770 0.0 28.846909 6 ACATCTC 18035 0.0 26.800909 8 CACATCT 18220 0.0 26.596 7 GTATCAA 16690 0.0 26.54003 1 TACATGG 20635 0.0 24.671185 2 CAACGCA 17425 0.0 24.552881 5 ATCAACG 17510 0.0 24.387457 3 ACATGGG 20685 0.0 24.157215 3 GTACATG 21360 0.0 24.082264 1 TCAACGC 18120 0.0 23.678734 4 CATCTCC 20590 0.0 23.41572 9 AACGCAG 18550 0.0 23.217878 6 CATGGGG 15135 0.0 21.929167 4 TATCAAC 20545 0.0 21.262075 2 >>END_MODULE