##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140091_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5968940 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.76419112941326 34.0 31.0 34.0 31.0 34.0 2 32.9798954253184 34.0 33.0 34.0 31.0 34.0 3 33.09228740781445 34.0 33.0 34.0 31.0 34.0 4 36.463887055323056 37.0 37.0 37.0 35.0 37.0 5 36.31591739906918 37.0 37.0 37.0 35.0 37.0 6 36.34038841067258 37.0 37.0 37.0 35.0 37.0 7 36.35465928623843 37.0 37.0 37.0 35.0 37.0 8 36.370120993007134 37.0 37.0 37.0 35.0 37.0 9 38.293077497847186 39.0 39.0 39.0 37.0 39.0 10-11 38.20389172951981 39.0 39.0 39.0 37.0 39.0 12-13 38.19089159884335 39.0 39.0 39.0 37.0 39.0 14-15 39.713107938762995 41.0 40.0 41.0 38.0 41.0 16-17 39.69761364664413 41.0 40.0 41.0 38.0 41.0 18-19 39.73639800366564 41.0 40.0 41.0 38.0 41.0 20-21 39.76044880817007 41.0 40.0 41.0 38.0 41.0 22-23 39.71608972992646 41.0 40.0 41.0 38.0 41.0 24-25 39.702519032281415 41.0 40.0 41.0 37.5 41.0 26-27 39.600224240971855 41.0 40.0 41.0 37.0 41.0 28-29 39.53987646122327 41.0 39.0 41.0 37.0 41.0 30-31 39.4847577799907 40.5 39.0 41.0 37.0 41.0 32-33 39.40852263984215 40.0 39.0 41.0 36.5 41.0 34-35 39.37765499497026 40.0 39.0 41.0 36.0 41.0 36-37 39.34136641981232 40.0 39.0 41.0 36.0 41.0 38-39 39.28560360640433 40.0 39.0 41.0 36.0 41.0 40-41 39.23065837526278 40.0 39.0 41.0 36.0 41.0 42-43 39.22763865298343 40.0 39.0 41.0 36.0 41.0 44-45 39.17591545396837 40.0 39.0 41.0 35.0 41.0 46-47 39.0753466753833 40.0 39.0 41.0 35.0 41.0 48-49 39.07578408415555 40.0 39.0 41.0 35.0 41.0 50-51 38.98385830717665 40.0 39.0 41.0 35.0 41.0 52-53 38.83823361041806 40.0 38.0 41.0 35.0 41.0 54-55 38.65891070185542 40.0 38.0 41.0 35.0 41.0 56-57 38.53264601925198 40.0 38.0 41.0 35.0 41.0 58-59 38.39522859504237 40.0 37.0 41.0 34.5 41.0 60-61 38.1881186322298 40.0 37.0 41.0 34.0 41.0 62-63 38.04667165195468 39.5 36.5 41.0 34.0 41.0 64-65 37.79541179141263 39.0 36.0 41.0 34.0 41.0 66-67 37.571612915123225 39.0 35.5 41.0 34.0 41.0 68-69 37.31851729758212 38.5 35.0 40.0 34.0 41.0 70-71 36.88136993238538 37.5 35.0 40.0 33.0 41.0 72-73 36.615583619998304 37.0 35.0 39.5 33.0 41.0 74-75 36.247979234234336 36.5 35.0 39.0 33.0 41.0 76-77 34.41814492347556 34.5 33.0 36.5 30.0 39.0 78-79 35.383042920483426 35.0 34.5 37.0 32.0 39.0 80-81 35.28800774892364 35.0 35.0 37.0 32.0 39.0 82-83 34.999015746531654 35.0 34.5 37.0 32.0 39.0 84-85 34.73916348148361 35.0 34.0 36.0 32.0 37.5 86-87 34.53430421708784 35.0 34.0 36.0 32.0 37.0 88-89 34.350182280062846 35.0 34.0 36.0 32.0 37.0 90-91 34.26606962353304 35.0 34.0 35.0 32.0 36.0 92-93 34.13669949086429 35.0 34.0 35.0 32.0 36.0 94-95 33.9835629493913 35.0 34.0 35.0 31.0 36.0 96-97 34.00038401738384 35.0 34.0 35.0 31.5 36.0 98-99 34.0222817662607 35.0 34.0 35.0 32.0 35.5 100-101 32.81253570451939 34.5 32.0 35.0 28.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 6.0 20 22.0 21 48.0 22 203.0 23 687.0 24 1888.0 25 4304.0 26 8097.0 27 13364.0 28 20599.0 29 29711.0 30 41010.0 31 55372.0 32 76100.0 33 106904.0 34 170631.0 35 284434.0 36 596720.0 37 1388773.0 38 2097788.0 39 1049887.0 40 22389.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.58238481204368 20.191172972085496 12.848713506920827 24.37772870895 2 14.79368841764123 21.32125928740545 41.0824321526006 22.802620142352716 3 18.2539480434103 26.328643808429884 30.384680207729858 25.032727940429954 4 12.044550623728837 17.755765680338552 39.89597818038044 30.303705515552178 5 12.713011020382178 38.275254902880576 36.253254346667916 12.758479730069325 6 29.599577008410073 38.53565967538813 19.088617977846216 12.776145338355576 7 26.220266915063643 32.58580250429725 23.894912664560206 17.299017916078903 8 24.323045632892942 36.767382483321995 21.681035493739255 17.228536390045804 9 25.554529130642674 16.267516935173393 21.549629096499242 36.628324837684694 10-11 24.055566166073593 26.73274227163373 29.433967954001726 19.777723608290948 12-13 24.849968545372146 24.23425362900963 29.4721570000578 21.443620825560426 14-15 21.81636940562311 25.775648607625474 26.973323571689445 25.43465841506197 16-17 21.606700687224198 28.735177435189495 27.60291609565517 22.055205781931132 18-19 21.442308014488333 28.374041287062695 29.09744443737079 21.086206261078182 20-21 22.320326586251007 27.590828261663404 28.802072805022945 21.286772347062648 22-23 22.05211186558488 27.496429925153265 28.621108233006492 21.83034997625536 24-25 21.786688515561515 27.571332594030824 28.81288649024807 21.829092400159592 26-27 21.922730038652 27.781405177702872 28.540856701421806 21.755008082223327 28-29 21.667888181443974 28.021009327160805 28.610356303431484 21.700746187963734 30-31 22.01382721194639 27.777445410829355 28.57830784704361 21.630419530180646 32-33 21.7624428226001 27.928084908570504 28.46966243226489 21.8398098365645 34-35 21.822480950131684 28.044609255520815 28.50817845934565 21.62473133500185 36-37 21.902069509569042 27.87863561831465 28.43713743892316 21.78215743319315 38-39 21.811617116896436 27.936517208265943 28.565192158598553 21.686673516239072 40-41 21.96220922949217 27.806423643059443 28.52783464041073 21.703532487037652 42-43 21.874036136466735 27.921340456100552 28.30422332916885 21.900400078263868 44-45 21.919663750070086 28.202521011879778 28.094723095256935 21.783092142793205 46-47 21.946642999130272 28.017855696276904 27.895408242747738 22.14009306184509 48-49 22.0750763515938 28.010912025931905 27.932935547065945 21.98107607540835 50-51 21.958959605795854 28.067644205442395 27.889120665551193 22.08427552321056 52-53 22.004820849600062 28.045745221085816 27.798893824119414 22.150540105194708 54-55 22.037682145610656 28.062740758516686 27.776478621084678 22.12309847478798 56-57 22.162175552573917 28.09533867669768 27.709520083407458 22.032965687320946 58-59 22.013169853265335 28.15080806641177 27.80803054367491 22.02799153664799 60-61 22.152420877253093 28.14638224034197 27.652139195763358 22.04905768664158 62-63 22.12307112526086 28.106226230484204 27.593606143368287 22.177096500886645 64-65 22.02247395957959 28.067903578464097 27.68127874802005 22.228343713936262 66-67 22.14545841814074 28.094471439362973 27.579558325187257 22.18051181730902 68-69 22.071897078674503 28.124001069940004 27.708827426423067 22.09527442496243 70-71 22.039055780565107 27.885732254750085 27.675423147287066 22.39978881739774 72-73 22.09324986694126 28.014841728454094 27.772714910164538 22.119193494440108 74-75 22.049630574435202 28.101765334210064 27.66486380710827 22.183740284246454 76-77 22.04937447978542 28.00371239854829 27.590571265319696 22.356341856346592 78-79 22.10411425933522 27.953238449545754 27.631852381189248 22.31079490992978 80-81 21.997399266344107 28.083823762480282 27.645380159054078 22.273396812121536 82-83 22.18370052277003 27.94361455011916 27.79112720620801 22.0815577209028 84-85 22.406764269445997 27.907392117434078 27.626783296886387 22.059060316233538 86-87 22.033824807286447 28.069222809306726 27.660673997410502 22.236278385996325 88-89 22.227217073261293 27.916460908200175 27.647102305740066 22.20921971279846 90-91 22.31222419781293 27.954273264116004 27.621963297004985 22.111539241066083 92-93 22.298200493106847 27.926677968736396 27.623614196194346 22.15150734196241 94-95 22.07910018819252 28.024061588553717 27.716723978764858 22.1801142444889 96-97 22.070832878654294 27.98349925497017 27.813694739596862 22.131973126778682 98-99 22.33819698320599 28.532630411794813 27.82408890801737 21.30508369698183 100-101 26.35812575633956 35.58256143884975 28.41334011468821 9.645972690122468 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 568.0 1 590.5 2 1136.0 3 1784.5 4 2709.0 5 4795.5 6 6392.5 7 7145.5 8 7208.0 9 6481.0 10 5524.0 11 4828.0 12 5394.0 13 7565.0 14 12375.5 15 18455.0 16 22975.5 17 25519.5 18 26066.5 19 25010.5 20 23602.5 21 22703.0 22 23472.0 23 27097.0 24 33283.5 25 42389.0 26 54581.0 27 67908.0 28 81472.0 29 95741.5 30 108218.5 31 119829.0 32 133409.5 33 146751.5 34 161244.0 35 176928.0 36 192237.5 37 206538.0 38 215981.5 39 222592.0 40 231745.5 41 239167.0 42 244352.0 43 252559.5 44 260933.5 45 268249.0 46 273393.5 47 275243.0 48 272313.0 49 265784.0 50 258720.0 51 248732.0 52 234403.0 53 220029.0 54 204349.0 55 185488.0 56 167674.0 57 148203.0 58 127710.0 59 109217.0 60 90853.0 61 73053.5 62 57693.0 63 44525.5 64 33051.5 65 24109.5 66 17856.5 67 13441.5 68 10071.5 69 7241.0 70 5283.0 71 3913.5 72 2763.0 73 1910.5 74 1293.5 75 849.0 76 581.5 77 389.5 78 250.5 79 167.5 80 112.0 81 79.0 82 57.5 83 40.5 84 27.5 85 18.0 86 15.0 87 14.0 88 11.0 89 9.5 90 8.5 91 10.0 92 12.5 93 10.5 94 8.5 95 6.0 96 3.0 97 1.5 98 1.5 99 2.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0017423529135826461 3 5.696153755943266E-4 4 0.0 5 0.0 6 4.523416217954947E-4 7 0.0 8 0.0 9 3.350678679966627E-5 10-11 3.3506786799666275E-4 12-13 4.1883483499582843E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 1.0059283549324314E-4 28-29 3.355424610110146E-5 30-31 5.881771189521843E-5 32-33 3.201848309065991E-4 34-35 5.073535828295312E-5 36-37 8.753870400563511E-4 38-39 2.5694395315808955E-4 40-41 9.503495083107632E-5 42-43 0.0 44-45 0.0 46-47 0.0 48-49 9.00213251517152E-6 50-51 6.369986661247932E-5 52-53 0.0 54-55 7.240979711981677E-4 56-57 8.445082100273152E-5 58-59 0.0 60-61 8.925432617158539E-4 62-63 0.0 64-65 0.0 66-67 7.932870463563235E-5 68-69 0.0 70-71 0.0 72-73 1.2334514500146883E-4 74-75 3.119313102300368E-5 76-77 4.2090668772322526E-5 78-79 8.52114922609325E-5 80-81 0.0 82-83 0.0 84-85 2.2132646483537463E-5 86-87 5.154315153428835E-4 88-89 1.2490266108525878E-4 90-91 2.3031492571998174E-5 92-93 0.0 94-95 1.1865857431011014E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 215.0 20-21 765.0 22-23 1183.0 24-25 1607.0 26-27 3184.0 28-29 7648.0 30-31 15770.0 32-33 19650.0 34-35 26219.0 36-37 41955.0 38-39 51332.0 40-41 49615.0 42-43 54155.0 44-45 62577.0 46-47 63345.0 48-49 60898.0 50-51 55569.0 52-53 53332.0 54-55 56901.0 56-57 59223.0 58-59 58972.0 60-61 57770.0 62-63 54676.0 64-65 55662.0 66-67 58522.0 68-69 60351.0 70-71 59482.0 72-73 55720.0 74-75 57044.0 76-77 56693.0 78-79 59321.0 80-81 60777.0 82-83 56797.0 84-85 55556.0 86-87 58143.0 88-89 60584.0 90-91 63877.0 92-93 64030.0 94-95 67378.0 96-97 104483.0 98-99 470198.0 100-101 3587761.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.46826679660151 #Duplication Level Percentage of deduplicated Percentage of total 1 88.84594455168624 75.046629481879 2 7.6851883776827306 12.98309084536492 3 2.0306409293213457 5.1457415935804285 4 0.7281906428764209 2.4603600600509714 5 0.3127404111142648 1.320832024203928 6 0.15639986279682702 0.7926495202604553 7 0.08491451003924402 0.5020807042228292 8 0.043324777588356976 0.29276550977894067 9 0.029470018204396303 0.2240353224170685 >10 0.08106343346980197 0.9619376828531294 >50 0.0013085361442098358 0.07294106444352833 >100 6.915057824841248E-4 0.12275409865780797 >500 9.183248667791718E-5 0.046774289118656005 >1k 3.061080695024322E-5 0.027407803168323527 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.6753393399833136E-5 0.0 0.0 0.0 5 0.0 1.6753393399833136E-5 0.0 0.0 0.0 6 6.701357359933255E-5 1.6753393399833136E-5 0.0 0.0 0.0 7 6.701357359933255E-5 1.6753393399833136E-5 0.0 0.0 0.0 8 6.701357359933255E-5 3.350678679966627E-5 0.0 1.6753393399833136E-5 0.0 9 6.701357359933255E-5 6.701357359933255E-5 0.0 1.6753393399833136E-5 3.350678679966627E-5 10-11 6.701357359933255E-5 6.701357359933255E-5 0.0 1.6753393399833136E-5 3.350678679966627E-5 12-13 6.701357359933255E-5 6.701357359933255E-5 0.0 5.026018019949941E-5 3.350678679966627E-5 14-15 6.701357359933255E-5 1.256504504987485E-4 0.0 1.0889705709891538E-4 5.863687689941598E-5 16-17 1.340271471986651E-4 1.340271471986651E-4 0.0 1.9266402409808106E-4 6.701357359933255E-5 18-19 1.340271471986651E-4 1.5078054059849822E-4 0.0 2.7643099109724673E-4 1.0889705709891538E-4 20-21 1.5078054059849822E-4 1.6753393399833135E-4 0.0 3.9370474489607867E-4 1.1727375379883195E-4 22-23 1.591572372984148E-4 1.9266402409808106E-4 0.0 6.114988590939095E-4 1.340271471986651E-4 24-25 1.6753393399833135E-4 2.0941741749791421E-4 0.0 8.795531534912396E-4 1.5078054059849822E-4 26-27 1.6753393399833135E-4 2.1779411419783077E-4 0.0 0.0011141006610889035 1.5078054059849822E-4 28-29 1.6753393399833135E-4 2.1779411419783077E-4 0.0 0.0017926130937821457 1.5078054059849822E-4 30-31 1.7591063069824793E-4 2.1779411419783077E-4 0.0 0.003601979580964124 1.5078054059849822E-4 32-33 1.842873273981645E-4 2.1779411419783077E-4 0.0 0.0063746661886365085 1.6753393399833135E-4 34-35 1.842873273981645E-4 2.345475075976639E-4 0.0 0.010479247571595627 1.6753393399833135E-4 36-37 1.842873273981645E-4 2.51300900997497E-4 0.0 0.01655235267903514 1.6753393399833135E-4 38-39 1.842873273981645E-4 2.51300900997497E-4 0.0 0.02577509574564328 1.6753393399833135E-4 40-41 1.842873273981645E-4 2.51300900997497E-4 0.0 0.036120316170040245 1.6753393399833135E-4 42-43 1.842873273981645E-4 2.51300900997497E-4 0.0 0.045895921218842874 1.842873273981645E-4 44-45 1.842873273981645E-4 2.51300900997497E-4 0.0 0.056408675577238165 2.0104072079799764E-4 46-47 1.842873273981645E-4 2.51300900997497E-4 0.0 0.06801877720332253 2.0104072079799764E-4 48-49 1.842873273981645E-4 2.51300900997497E-4 0.0 0.07989693312380422 2.1779411419783077E-4 50-51 1.842873273981645E-4 2.51300900997497E-4 0.0 0.0912557338488911 2.1779411419783077E-4 52-53 1.842873273981645E-4 2.51300900997497E-4 0.0 0.10228784340268121 2.345475075976639E-4 54-55 1.842873273981645E-4 2.51300900997497E-4 0.0 0.11398171199576473 2.51300900997497E-4 56-57 1.842873273981645E-4 2.51300900997497E-4 0.0 0.12259295620327898 2.51300900997497E-4 58-59 1.842873273981645E-4 2.51300900997497E-4 0.0 0.13026601038040253 2.51300900997497E-4 60-61 2.0104072079799764E-4 2.51300900997497E-4 0.0 0.13748672293573064 2.51300900997497E-4 62-63 2.345475075976639E-4 2.51300900997497E-4 0.0 0.1443974977131618 2.680542943973302E-4 64-65 2.345475075976639E-4 2.8480768779716334E-4 0.0 0.15129989579389305 2.680542943973302E-4 66-67 2.345475075976639E-4 3.0156108119699644E-4 0.0 0.15812690360432505 2.680542943973302E-4 68-69 2.345475075976639E-4 3.4344456469657925E-4 0.0 0.16531410937285346 2.680542943973302E-4 70-71 2.345475075976639E-4 3.5182126139649586E-4 0.0 0.17147935814399207 2.8480768779716334E-4 72-73 2.7643099109724673E-4 3.5182126139649586E-4 0.0 0.1768571974253385 3.853280481961621E-4 74-75 2.8480768779716334E-4 3.5182126139649586E-4 0.0 0.18147275730699253 3.853280481961621E-4 76-77 2.931843844970799E-4 3.68574654796329E-4 0.0 0.1854600649361528 3.853280481961621E-4 78-79 3.0156108119699644E-4 3.853280481961621E-4 0.0 0.1890452911237171 3.853280481961621E-4 80-81 3.0156108119699644E-4 3.853280481961621E-4 0.0 0.19083790421749924 4.104581382959118E-4 82-83 3.0156108119699644E-4 3.853280481961621E-4 0.0 0.19144102637989324 4.3558822839566153E-4 84-85 3.0156108119699644E-4 3.853280481961621E-4 0.0 0.19195200487858816 4.3558822839566153E-4 86-87 3.0156108119699644E-4 3.853280481961621E-4 0.0 0.19211953881258648 4.3558822839566153E-4 88-89 3.0156108119699644E-4 3.853280481961621E-4 0.0 0.19216142229608607 4.3558822839566153E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9330 0.0 28.811075 1 GTATCAA 13470 0.0 25.2403 1 ATCAACG 13890 0.0 23.42185 3 CGTCGAA 180 2.0032554E-4 23.205357 94-95 CAACGCA 14040 0.0 23.141602 5 TCAACGC 14245 0.0 22.984732 4 AACGCAG 14485 0.0 22.604658 6 GTACATG 16155 0.0 22.367111 1 TACATGG 15730 0.0 22.039803 2 ACATGGG 16015 0.0 20.967653 3 ACGCAGA 16120 0.0 20.207872 7 CGCAGAG 16330 0.0 19.948004 8 CATGGGG 10920 0.0 19.132559 4 GTACTAG 1840 0.0 19.114702 1 TATCAAC 17475 0.0 19.07225 2 AGAGTAC 15690 0.0 17.212454 10-11 GAGTACT 10015 0.0 16.889912 12-13 CGACGAG 725 0.0 16.794336 24-25 CTAACGC 575 0.0 16.74798 3 GCAGAGT 19890 0.0 16.461826 9 >>END_MODULE