##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140090_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5265588 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.79619882907664 34.0 31.0 34.0 31.0 34.0 2 32.99706452536735 34.0 33.0 34.0 31.0 34.0 3 33.105216549414806 34.0 33.0 34.0 31.0 34.0 4 36.468347314677864 37.0 37.0 37.0 35.0 37.0 5 36.331956848883735 37.0 37.0 37.0 35.0 37.0 6 36.366492023303 37.0 37.0 37.0 35.0 37.0 7 36.37200707689246 37.0 37.0 37.0 35.0 37.0 8 36.38676288384127 37.0 37.0 37.0 35.0 37.0 9 38.29682307085173 39.0 39.0 39.0 37.0 39.0 10-11 38.206691066600726 39.0 39.0 39.0 37.0 39.0 12-13 38.1885653606017 39.0 39.0 39.0 37.0 39.0 14-15 39.69770232688163 41.0 40.0 41.0 37.5 41.0 16-17 39.6771163068588 41.0 40.0 41.0 37.5 41.0 18-19 39.7147781976106 41.0 40.0 41.0 38.0 41.0 20-21 39.7342831374268 41.0 40.0 41.0 38.0 41.0 22-23 39.68528887338681 41.0 40.0 41.0 37.5 41.0 24-25 39.65732795618932 41.0 40.0 41.0 37.0 41.0 26-27 39.54404056111607 41.0 39.0 41.0 37.0 41.0 28-29 39.48090118310316 41.0 39.0 41.0 37.0 41.0 30-31 39.41117761004191 40.0 39.0 41.0 36.5 41.0 32-33 39.32706442946002 40.0 39.0 41.0 36.0 41.0 34-35 39.2918104930024 40.0 39.0 41.0 36.0 41.0 36-37 39.2559706061099 40.0 39.0 41.0 35.5 41.0 38-39 39.190051547608775 40.0 39.0 41.0 35.0 41.0 40-41 39.12428176910194 40.0 39.0 41.0 35.0 41.0 42-43 39.10703082004521 40.0 39.0 41.0 35.0 41.0 44-45 39.035579410226845 40.0 39.0 41.0 35.0 41.0 46-47 38.917375049300034 40.0 38.0 41.0 35.0 41.0 48-49 38.89649783816803 40.0 38.0 41.0 35.0 41.0 50-51 38.77463570300729 40.0 38.0 41.0 35.0 41.0 52-53 38.59864323440459 40.0 38.0 41.0 35.0 41.0 54-55 38.38591403283428 40.0 37.0 41.0 34.5 41.0 56-57 38.218581699480396 40.0 37.0 41.0 34.0 41.0 58-59 38.04165311872583 39.5 36.5 41.0 34.0 41.0 60-61 37.785625626056714 39.0 36.0 41.0 34.0 41.0 62-63 37.600147323537314 39.0 35.0 41.0 34.0 41.0 64-65 37.317024581418195 38.5 35.0 40.0 33.5 41.0 66-67 37.0709866267277 37.5 35.0 40.0 33.0 41.0 68-69 36.801588095291606 37.0 35.0 40.0 33.0 41.0 70-71 36.36154889877515 36.5 35.0 39.0 33.0 41.0 72-73 36.1054040714739 36.0 35.0 39.0 33.0 41.0 74-75 35.757172861439706 35.5 35.0 38.5 32.5 40.0 76-77 33.995090450647524 34.5 33.0 36.5 30.0 39.0 78-79 35.00181559369098 35.0 34.0 37.0 32.0 39.0 80-81 34.952441252681425 35.0 34.0 36.5 32.0 39.0 82-83 34.70421611057361 35.0 34.0 36.0 32.0 37.5 84-85 34.48558586271023 35.0 34.0 36.0 32.0 37.0 86-87 34.32475559800825 35.0 34.0 35.5 32.0 37.0 88-89 34.183037467884745 35.0 34.0 35.0 32.0 36.0 90-91 34.129627499495044 35.0 34.0 35.0 32.0 36.0 92-93 34.0204952159865 35.0 34.0 35.0 31.5 36.0 94-95 33.88265925872985 35.0 34.0 35.0 31.0 36.0 96-97 33.91569056265093 35.0 34.0 35.0 31.0 35.0 98-99 33.94434463334865 35.0 34.0 35.0 31.0 35.0 100-101 32.6838528922393 34.0 31.5 35.0 28.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 7.0 20 17.0 21 67.0 22 208.0 23 653.0 24 1707.0 25 3899.0 26 7325.0 27 12024.0 28 18560.0 29 26488.0 30 36063.0 31 49185.0 32 68442.0 33 99288.0 34 167281.0 35 286421.0 36 614841.0 37 1325722.0 38 1668612.0 39 857055.0 40 21722.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.45178544162589 19.65624731748857 12.468351112924141 24.4236161279614 2 15.57963390343474 20.79181144568337 39.96048995194375 23.668064698938142 3 18.7103484870181 26.045273040180707 29.740472147132635 25.503906325668563 4 12.581690781732258 17.137649204609247 38.52075019921802 31.75990981444048 5 13.37018771692734 37.993002870714534 35.19768352556258 13.43912588679555 6 30.768980959834607 37.284270047229604 18.48726999804199 13.459478994893795 7 27.13824173102795 32.209090418771844 23.040389791225596 17.61227805897461 8 25.672137660599347 35.30397744753292 20.96377460598892 18.060110285878807 9 26.509712972171958 15.503057873699552 20.916851245644597 37.0703779084839 10-11 25.204144546160762 25.951822314410183 28.257336978015964 20.58669616141309 12-13 25.83984718846256 23.63714210671549 28.356943624917413 22.166067079904533 14-15 22.902731850649918 24.86773556913302 26.077657424014184 26.15187515620288 16-17 22.43035345720174 27.63717936154519 26.81980625905407 23.112660922199 18-19 22.168578324016234 27.36029670380592 28.42170712938422 22.049417842793627 20-21 23.310233285226435 26.54037513505732 27.964466606917632 22.184924972798616 22-23 23.103373085442662 26.56815252410636 27.707950206598774 22.620524183852208 24-25 22.739067275694886 26.56021686252819 28.14074938891528 22.559966472861646 26-27 22.82800986302932 26.771492234527255 27.756056308585492 22.644441593857938 28-29 22.437406027014767 27.27485237741548 27.692199421968066 22.595542173601686 30-31 22.876661107679304 26.884803148082785 27.638578578019484 22.599957166218424 32-33 22.585277733687068 27.039495167259425 27.536790548967144 22.83843655008636 34-35 22.772629677570684 27.10779735706111 27.677125596074383 22.442447369293824 36-37 22.890574415842966 26.89023180458383 27.598682204829274 22.620511574743936 38-39 22.65222827749179 26.92091302548715 27.753559306919772 22.67329939010129 40-41 22.83611401765212 26.713581502806004 27.821621539279057 22.628682940262816 42-43 22.863839895667308 26.902018904396684 27.391633713331043 22.84250748660496 44-45 22.81160989003247 27.3783697784988 27.097660284543252 22.712360046925482 46-47 22.897023772291668 27.083758563588656 26.902013780752377 23.117203883367296 48-49 23.101413457433985 27.07353882024366 26.833419089137678 22.99162863318468 50-51 22.91195886617857 27.053743901156242 26.86256407846902 23.17173315419617 52-53 22.953758949656837 27.14919579966488 26.584072780770747 23.312972469907535 54-55 23.033568836324626 27.152175772381938 26.566037727657353 23.248217663636083 56-57 23.162829961283133 27.167741841803387 26.480032367457767 23.189395829455705 58-59 22.98967188275002 27.261340926043147 26.722020383132566 23.026966808074267 60-61 23.145776245982177 27.263589490847302 26.60304223748361 22.98759202568692 62-63 23.17718936732125 27.0756463172402 26.42819932223887 23.31896499319968 64-65 22.969836238725318 27.212399665652903 26.497762961296257 23.320001134325526 66-67 23.08286889205717 27.127219597261664 26.401253696874004 23.38865781380716 68-69 23.023215389831382 27.069064206706294 26.57207659338016 23.335643810082157 70-71 23.079276332115832 26.837750652832288 26.508212781278523 23.574760233773357 72-73 23.097996958184268 26.99801112048423 26.733200741365614 23.17079117996589 74-75 23.065005426589916 27.14532645091028 26.631405280715185 23.15826284178462 76-77 23.083774008536228 27.063946950455797 26.428994538309443 23.423284502698536 78-79 22.969719703661486 27.0960371391459 26.455211726489086 23.479031430703525 80-81 22.91799976463025 27.086199534772486 26.67396286774401 23.321837832853255 82-83 23.28749129963718 26.91574493017287 26.81019954512659 22.98656422506336 84-85 23.457236029215206 26.98858069768241 26.429352030850094 23.124831242252295 86-87 22.94028701932739 27.18245564625832 26.645343694502284 23.231913639912012 88-89 23.267899393616545 26.907824882301952 26.505397682061542 23.31887804201996 90-91 23.26163225641925 26.94510598988803 26.547698626724852 23.24556312696787 92-93 23.402236139504115 26.968648183898164 26.513365514094268 23.115750162503456 94-95 22.932784113844814 26.975728851582225 26.7921261060501 23.29936092852286 96-97 23.09195302901991 27.058215746848123 26.66014623266022 23.189684991471747 98-99 23.30394335951711 27.697282390574152 26.630844129299337 22.3679301206094 100-101 27.75023431966716 34.4683271100534 27.27812133891298 10.503317231366461 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 582.0 1 657.5 2 1376.0 3 2157.0 4 3221.5 5 5743.0 6 7657.5 7 8507.5 8 8429.0 9 7341.0 10 6060.5 11 5065.5 12 5728.0 13 8506.5 14 14211.0 15 21368.5 16 26573.0 17 29079.5 18 28985.5 19 26815.0 20 23807.5 21 20843.0 22 19324.5 23 20300.5 24 23479.0 25 28776.5 26 36510.0 27 44877.5 28 53641.5 29 64882.5 30 75798.0 31 86066.0 32 98300.5 33 110769.0 34 122737.0 35 135106.5 36 146776.0 37 160210.5 38 169729.5 39 173120.5 40 177325.0 41 181139.0 42 185596.5 43 196654.5 44 211876.0 45 228380.0 46 241708.5 47 249807.0 48 252632.5 49 250783.5 50 246547.0 51 244488.0 52 243391.0 53 240194.0 54 236948.5 55 225950.0 56 209791.0 57 187300.0 58 162367.0 59 139537.0 60 113590.5 61 90934.0 62 73298.0 63 57394.5 64 43235.0 65 31556.5 66 23066.0 67 17759.0 68 13766.5 69 10400.5 70 7761.5 71 5195.5 72 3685.5 73 2608.5 74 1707.0 75 1094.0 76 727.5 77 471.5 78 296.5 79 201.0 80 160.5 81 127.5 82 94.0 83 68.0 84 44.5 85 26.0 86 18.0 87 14.5 88 10.5 89 6.0 90 4.5 91 3.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001747193285916027 3 4.937720155849642E-4 4 0.0 5 0.0 6 6.646930979028364E-4 7 0.0 8 0.0 9 1.8991231368652466E-5 10-11 3.323465489514182E-4 12-13 3.2285093326709193E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 3.8007805663049015E-5 28-29 0.0 30-31 3.812529171805241E-5 32-33 1.5308143846417985E-4 34-35 4.806564613686789E-5 36-37 6.87153453270323E-4 38-39 1.8577744585540786E-4 40-41 2.967539568430721E-5 42-43 0.0 44-45 0.0 46-47 0.0 48-49 1.0436810798675903E-5 50-51 8.46583242942935E-5 52-53 0.0 54-55 7.05505427887414E-4 56-57 1.1000347390970606E-4 58-59 1.1156123590660851E-5 60-61 8.825019881751521E-4 62-63 0.0 64-65 0.0 66-67 5.8914292077029255E-5 68-69 0.0 70-71 0.0 72-73 1.231502827530492E-4 74-75 0.0 76-77 2.5341325480563393E-5 78-79 9.001613089065561E-5 80-81 0.0 82-83 0.0 84-85 0.0 86-87 2.871005320793147E-4 88-89 1.1109472463922683E-4 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 114.0 20-21 483.0 22-23 911.0 24-25 1438.0 26-27 3435.0 28-29 8829.0 30-31 18955.0 32-33 23317.0 34-35 30748.0 36-37 48482.0 38-39 60302.0 40-41 56980.0 42-43 61800.0 44-45 71292.0 46-47 70529.0 48-49 67348.0 50-51 61333.0 52-53 57621.0 54-55 60819.0 56-57 63514.0 58-59 62117.0 60-61 61164.0 62-63 57560.0 64-65 58025.0 66-67 60950.0 68-69 61628.0 70-71 61654.0 72-73 57056.0 74-75 56649.0 76-77 57359.0 78-79 60066.0 80-81 60353.0 82-83 56397.0 84-85 55096.0 86-87 56232.0 88-89 58808.0 90-91 61176.0 92-93 60137.0 94-95 62960.0 96-97 91844.0 98-99 391401.0 100-101 2888706.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.59821455757861 #Duplication Level Percentage of deduplicated Percentage of total 1 88.28023625936086 72.03509659485059 2 7.566853177376457 12.34883418186519 3 2.1717692649035136 5.3163748334145495 4 0.8603230336877216 2.8080329396671053 5 0.4145725078753086 1.691418822364144 6 0.23646264439418874 1.1576957755277655 7 0.13331049495839906 0.7614528859274713 8 0.08723748684940925 0.5694738535521631 9 0.055675301097835375 0.4088704648085067 >10 0.18779604637408048 2.39133703449646 >50 0.004550554936823152 0.24193882086702417 >100 0.001040891344521461 0.1845018704814931 >500 1.723368408476899E-4 0.08497192217756902 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.798246273730493E-5 0.0 0.0 0.0 3 0.0 3.798246273730493E-5 0.0 0.0 0.0 4 0.0 9.495615684326233E-5 0.0 0.0 0.0 5 1.5192985094921973E-4 9.495615684326233E-5 0.0 0.0 0.0 6 2.0890354505517713E-4 9.495615684326233E-5 0.0 0.0 0.0 7 3.0385970189843945E-4 1.3293861958056725E-4 0.0 0.0 0.0 8 3.6083339600439683E-4 1.3293861958056725E-4 0.0 0.0 0.0 9 3.6083339600439683E-4 1.3293861958056725E-4 0.0 0.0 0.0 10-11 3.6083339600439683E-4 1.3293861958056725E-4 0.0 0.0 0.0 12-13 4.3679832147900673E-4 1.8991231368652465E-4 0.0 1.8991231368652466E-5 0.0 14-15 6.362062508498577E-4 2.0890354505517713E-4 0.0 1.8991231368652466E-5 0.0 16-17 6.931799449558149E-4 2.2789477642382958E-4 0.0 3.798246273730493E-5 0.0 18-19 9.780484154856021E-4 2.468860077924821E-4 0.0 7.596492547460986E-5 0.0 20-21 0.0012534212703310627 2.6587723916113456E-4 0.0 1.3293861958056728E-4 0.0 22-23 0.0013388818114899988 3.133553175827657E-4 0.0 2.1839916073950334E-4 0.0 24-25 0.0017661845172846794 4.2730270579468047E-4 0.0 2.84868470529787E-4 0.0 26-27 0.0018041669800219842 4.7478078421631163E-4 0.0 3.513377803200706E-4 0.0 28-29 0.0022314696858166646 4.7478078421631163E-4 0.0 8.451097959050347E-4 0.0 30-31 0.0023739039210815584 5.127632469536166E-4 0.0 0.0025448250033994306 0.0 32-33 0.0024403732308718416 5.127632469536166E-4 0.0 0.005194101779326449 0.0 34-35 0.0026207899288740403 5.69736941059574E-4 0.0 0.008840418202107722 0.0 36-37 0.0029151540150881535 6.551974822185101E-4 0.0 0.01381612082069467 0.0 38-39 0.0034564041090947486 6.741887135871625E-4 0.0 0.021735464301422747 0.0 40-41 0.0034753953404634014 6.93179944955815E-4 0.0 0.030832264127007278 0.0 42-43 0.003703290116887231 7.121711763244674E-4 0.0 0.03878959007047266 0.0 44-45 0.004026141050154323 7.216667920087937E-4 0.0 0.0477439556607923 0.0 46-47 0.004529408681423613 7.216667920087937E-4 0.0 0.05726805819217151 0.0 48-49 0.004766799073531769 7.596492547460986E-4 0.0 0.06673518702944475 0.0 50-51 0.004766799073531769 8.071273331677298E-4 0.0 0.07605988163145314 0.0 52-53 0.004776294689216095 8.261185645363823E-4 0.0 0.08461543136303107 0.0 54-55 0.004861755230375031 8.356141802207085E-4 0.0 0.09346534518082311 0.0 56-57 0.005089650006798861 8.735966429580135E-4 0.0 0.10247668446524871 0.0 58-59 0.005127632469536166 8.830922586423397E-4 0.0 0.11163995360062352 0.0 60-61 0.005137128085220492 9.115791056953183E-4 0.0 0.12044238933999393 0.0 62-63 0.005241579857748081 9.115791056953183E-4 0.0 0.12852315828735555 0.0 64-65 0.00531754478322269 9.210747213796446E-4 0.0 0.1361481376818695 0.0 66-67 0.005526448328277867 9.685527998012758E-4 0.0 0.1436021959940656 0.0 68-69 0.00562140448512113 9.685527998012758E-4 0.0 0.1513791052395288 0.0 70-71 0.005754343104701697 9.875440311699283E-4 0.0 0.15877618985761893 0.0 72-73 0.005868290492913612 0.0010065352625385807 0.0 0.16482489704853476 0.0 74-75 0.0059252641870195695 0.0010065352625385807 0.0 0.16992404267101796 0.0 76-77 0.005963246649756874 0.001016030878222907 0.0 0.17444395573675722 0.0 78-79 0.005991733496809853 0.0010445177252758856 0.0 0.17890689510839053 0.0 80-81 0.006466514281026165 0.001063508956644538 0.0 0.1807680357825185 0.0 82-83 0.00662793974765971 0.001063508956644538 0.0 0.18166062365684515 0.0 84-85 0.006741887135871625 0.001063508956644538 0.0 0.18223985621358907 0.0 86-87 0.006893816986820845 0.001063508956644538 0.0 0.18248674222138156 0.0 88-89 0.0069412950652424765 0.001063508956644538 0.0 0.1825057334527502 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9255 0.0 32.870876 1 GTATCAA 13640 0.0 27.514618 1 ATCAACG 15170 0.0 23.802021 3 CAACGCA 15420 0.0 23.257645 5 ACGGTAC 415 0.0 22.510098 3 AACGCAG 16320 0.0 22.447903 6 TACATGG 18345 0.0 22.273382 2 TATCAAC 16750 0.0 22.163446 2 TCAACGC 16325 0.0 22.067839 4 GTACATG 19120 0.0 21.689209 1 ACATGGG 18110 0.0 21.552746 3 CGCAGAG 17955 0.0 20.109516 8 ACGCAGA 18000 0.0 20.081804 7 CATGGGG 13435 0.0 19.52919 4 GGTTCAC 2120 0.0 18.008661 6 TAACGCC 780 0.0 17.704094 4 TCTAACG 845 0.0 17.304207 2 CTAACGC 825 0.0 17.23105 3 ACGGGCG 1305 0.0 16.80632 5 GAGTACT 10540 0.0 16.743044 12-13 >>END_MODULE