##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140089_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5911083 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.80541399943124 34.0 31.0 34.0 31.0 34.0 2 33.00343642611684 34.0 33.0 34.0 31.0 34.0 3 33.108430553250564 34.0 33.0 34.0 31.0 34.0 4 36.471991342364845 37.0 37.0 37.0 35.0 37.0 5 36.34000199286662 37.0 37.0 37.0 35.0 37.0 6 36.37320200037794 37.0 37.0 37.0 35.0 37.0 7 36.37672149079957 37.0 37.0 37.0 35.0 37.0 8 36.39046042831745 37.0 37.0 37.0 35.0 37.0 9 38.29522170471976 39.0 39.0 39.0 37.0 39.0 10-11 38.20838482558949 39.0 39.0 39.0 37.0 39.0 12-13 38.18781575220649 39.0 39.0 39.0 37.0 39.0 14-15 39.7084745722569 41.0 40.0 41.0 38.0 41.0 16-17 39.68824545349811 41.0 40.0 41.0 37.5 41.0 18-19 39.72411637596697 41.0 40.0 41.0 38.0 41.0 20-21 39.73860147402951 41.0 40.0 41.0 38.0 41.0 22-23 39.691609792389286 41.0 40.0 41.0 37.5 41.0 24-25 39.66895219747667 41.0 40.0 41.0 37.0 41.0 26-27 39.55552962835609 41.0 39.5 41.0 37.0 41.0 28-29 39.49431686954629 41.0 39.0 41.0 37.0 41.0 30-31 39.42958328871383 40.5 39.0 41.0 37.0 41.0 32-33 39.34584990567559 40.0 39.0 41.0 36.0 41.0 34-35 39.31189693172493 40.0 39.0 41.0 36.0 41.0 36-37 39.27253841755687 40.0 39.0 41.0 36.0 41.0 38-39 39.20945903980744 40.0 39.0 41.0 35.0 41.0 40-41 39.144444684071274 40.0 39.0 41.0 35.0 41.0 42-43 39.131545192192874 40.0 39.0 41.0 35.0 41.0 44-45 39.06542920181127 40.0 39.0 41.0 35.0 41.0 46-47 38.95030064442939 40.0 38.0 41.0 35.0 41.0 48-49 38.93149164144826 40.0 38.0 41.0 35.0 41.0 50-51 38.81302383879927 40.0 38.0 41.0 35.0 41.0 52-53 38.64335451691157 40.0 38.0 41.0 35.0 41.0 54-55 38.431446900592334 40.0 37.5 41.0 34.5 41.0 56-57 38.273121506391504 40.0 37.0 41.0 34.0 41.0 58-59 38.098924846458274 39.5 36.5 41.0 34.0 41.0 60-61 37.85698857411977 39.0 36.0 41.0 34.0 41.0 62-63 37.67059821895105 39.0 35.5 41.0 34.0 41.0 64-65 37.38118260606084 39.0 35.0 40.5 33.5 41.0 66-67 37.12615442281298 38.0 35.0 40.0 33.0 41.0 68-69 36.85038294817135 37.0 35.0 40.0 33.0 41.0 70-71 36.405718869060706 37.0 35.0 39.0 33.0 41.0 72-73 36.13811302274071 36.0 35.0 39.0 33.0 41.0 74-75 35.779049323266165 36.0 35.0 39.0 32.5 40.0 76-77 34.017131153212986 34.5 33.0 36.5 30.0 39.0 78-79 35.023759067360004 35.0 34.0 37.0 32.0 39.0 80-81 34.96777501553409 35.0 34.0 36.5 32.0 39.0 82-83 34.7214652869169 35.0 34.0 36.0 32.0 37.5 84-85 34.498896986449395 35.0 34.0 36.0 32.0 37.0 86-87 34.3323935376515 35.0 34.0 35.5 32.0 37.0 88-89 34.18071532791117 35.0 34.0 35.0 32.0 36.0 90-91 34.13087532465438 35.0 34.0 35.0 32.0 36.0 92-93 34.01782224315136 35.0 34.0 35.0 31.5 36.0 94-95 33.88009694479234 35.0 34.0 35.0 31.0 36.0 96-97 33.91022986417214 35.0 34.0 35.0 31.0 35.5 98-99 33.936919392596835 35.0 34.0 35.0 31.0 35.0 100-101 32.68773037615572 34.0 31.5 35.0 28.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 18.0 21 73.0 22 257.0 23 723.0 24 2057.0 25 4448.0 26 8360.0 27 14295.0 28 21567.0 29 30353.0 30 42404.0 31 57268.0 32 78750.0 33 112034.0 34 184481.0 35 317328.0 36 680240.0 37 1508493.0 38 1903357.0 39 921741.0 40 22831.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.393537191069726 19.48389153053679 12.636144679409847 24.486426598983638 2 15.589914466263835 20.705139450999923 39.99087464204455 23.714071440691686 3 18.732461869289192 25.94077633259342 29.63413093005996 25.69263086805743 4 12.640475527073466 17.05135928559961 38.337187956927686 31.970977230399235 5 13.362745879223825 37.900584376839234 35.28502306599315 13.451646677943788 6 30.938193245771945 37.18049897370231 18.428273270430836 13.453034510094902 7 27.379111408180197 31.99239462548572 22.946421154972786 17.6820728113613 8 25.630074894905047 35.45416296810585 20.932864586743243 17.98289755024587 9 26.40353370280896 15.778165749744547 20.818496789080847 36.999803758365644 10-11 25.080044837966508 26.0563245657041 28.377151178586864 20.48647941774253 12-13 25.665722954700982 23.56932053584343 28.50118971994001 22.263766789515575 14-15 22.79391103119344 24.8325898993467 26.071499926494013 26.301999142965848 16-17 22.501908702686123 27.80493016254382 26.663540336009493 23.02962079876057 18-19 22.419910192430052 27.26996897184492 28.275698378791166 22.034422456933864 20-21 23.30382884458455 26.58156525346315 27.951168589397046 22.163437312555253 22-23 23.211908266190946 26.454648369354004 27.662543065679106 22.670900298775948 24-25 22.82915881284181 26.541342212533937 27.92711819750468 22.702380777119576 26-27 22.794020383141724 26.83526432638755 27.78513365968906 22.58558163078167 28-29 22.62693301626634 27.031048100473352 27.724520637034995 22.61749824622531 30-31 22.984260060965365 26.84741654088586 27.586395036695638 22.581928361453134 32-33 22.771484984335054 26.92963180029223 27.581783969699252 22.717099245673463 34-35 22.80094619331021 27.047424098188877 27.651148347738264 22.50048136076265 36-37 22.874238290763106 26.87634300149731 27.609485053227573 22.639933654512006 38-39 22.724995908188063 26.992989824565296 27.647298294477302 22.634715972769335 40-41 22.86758512282412 26.81058404378083 27.734651646552127 22.58717918684292 42-43 22.883825322731994 26.901158506966468 27.363164596741363 22.851851573560175 44-45 22.8710038224016 27.288493807881014 27.13356346754373 22.706938902173654 46-47 22.911700646060158 27.070747995624018 26.944874252075884 23.07267710623994 48-49 23.033377312431103 26.95796189692028 27.003868669786872 23.004792120861747 50-51 22.76119787109194 27.070885419231605 26.986136426217133 23.18178028345932 52-53 22.92223256653037 27.166510845692983 26.708715044711134 23.202541543065518 54-55 23.03079424826274 27.07446206593143 26.73479105019947 23.159952635606356 56-57 23.11056123885797 27.120499211388456 26.72261210926477 23.04632744048881 58-59 22.95794704213739 27.187611818581747 26.87637585076745 22.978065288513413 60-61 23.145825738636738 27.244638672209803 26.620716848983587 22.988818740169872 62-63 23.08411444414436 27.179346130306946 26.607664168457312 23.128875257091376 64-65 22.87622190878057 27.219491534712297 26.663149917006784 23.241136639500347 66-67 22.978101429095116 27.193485242833816 26.530179612368816 23.298233715702256 68-69 22.97942714755769 27.108549645902812 26.74490398816794 23.167119218371564 70-71 22.98709606890923 26.868058774191805 26.647081812533145 23.497763344365826 72-73 23.07252422065825 27.042866638710432 26.71351539434949 23.17109374628183 74-75 22.944277771127975 27.207355571462738 26.677639911548823 23.170726745860463 76-77 23.01813264226865 27.094215238722175 26.556912012842982 23.3307401061662 78-79 23.023906178531167 27.059562553777504 26.577112073012763 23.33941919467856 80-81 22.888312832186266 27.188566469314186 26.640358939283832 23.28276175921572 82-83 23.186442674860576 27.0193360573384 26.778917613686698 23.015303654114327 84-85 23.332829107958997 26.942065190509723 26.545019150845594 23.180086550685683 86-87 22.894551630537098 27.198066653420867 26.75064428473533 23.156737431306706 88-89 23.169558316914248 26.90582675189673 26.71259194364733 23.2120229875417 90-91 23.238883455938375 26.929160445799223 26.69457382974365 23.13738226851875 92-93 23.303422854057228 27.024909414201947 26.60268229146799 23.068985440272833 94-95 22.964442327655117 27.072475030491734 26.769458634410864 23.193624007442285 96-97 23.043642420376482 27.05548454080403 26.78507450869957 23.115798530119914 98-99 23.316628003306455 27.704994202772966 26.688752208521656 22.289625585398927 100-101 27.862000187012697 34.64753433230127 27.175802248109033 10.314663232577002 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 711.0 1 743.0 2 1428.0 3 2221.0 4 3344.0 5 5929.5 6 7828.5 7 8594.5 8 8668.5 9 7786.0 10 6545.5 11 5638.5 12 6253.0 13 8848.5 14 14610.5 15 21735.5 16 26774.0 17 29389.0 18 29439.0 19 27215.5 20 24185.0 21 21544.5 22 20558.0 23 22315.5 24 26778.5 25 33299.0 26 42304.5 27 52636.5 28 62068.5 29 73057.5 30 83653.5 31 93287.5 32 105552.5 33 119029.5 34 132016.5 35 145174.0 36 161007.5 37 176059.0 38 183398.0 39 187922.5 40 196112.0 41 203386.5 42 208993.5 43 218416.5 44 230783.5 45 244492.0 46 253235.5 47 258729.0 48 266443.5 49 271223.5 50 272954.0 51 273568.5 52 269339.0 53 263700.5 54 255342.0 55 239890.5 56 222651.0 57 203590.0 58 182473.5 59 159387.0 60 132965.0 61 105493.5 62 81834.5 63 63468.0 64 48845.0 65 36400.0 66 26898.5 67 20321.5 68 15621.5 69 11853.5 70 8650.0 71 6293.5 72 4716.0 73 3392.0 74 2444.5 75 1723.0 76 1085.5 77 659.5 78 445.0 79 317.5 80 220.0 81 156.5 82 118.0 83 83.5 84 49.5 85 26.0 86 17.5 87 15.5 88 10.5 89 6.0 90 4.5 91 3.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0013872246422525281 3 5.75190705324219E-4 4 0.0 5 0.0 6 5.075212105801932E-4 7 0.0 8 0.0 9 5.075212105801932E-5 10-11 3.552648474061352E-4 12-13 4.736864632081803E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 3.385256109435174E-5 28-29 8.469272210031176E-6 30-31 4.242660854334434E-5 32-33 2.723961334390344E-4 34-35 3.4184507632417746E-5 36-37 7.13368771431145E-4 38-39 1.9071968419594402E-4 40-41 6.12793964924899E-5 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 1.0201772511602198E-4 52-53 0.0 54-55 6.918474497223559E-4 56-57 5.753135818592122E-5 58-59 0.0 60-61 7.171012136299525E-4 62-63 9.940219519807876E-6 64-65 1.005551650663312E-5 66-67 3.053142696460319E-5 68-69 1.0305954945662883E-5 70-71 0.0 72-73 7.403285070260348E-5 74-75 0.0 76-77 3.252374151821476E-5 78-79 5.490999702387816E-5 80-81 0.0 82-83 0.0 84-85 2.2867358686297684E-5 86-87 5.329186762624467E-4 88-89 8.222751036477769E-5 90-91 2.384615604733748E-5 92-93 2.4219986260001795E-5 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 107.0 20-21 376.0 22-23 799.0 24-25 1328.0 26-27 3069.0 28-29 8524.0 30-31 18067.0 32-33 21773.0 34-35 28962.0 36-37 46005.0 38-39 57188.0 40-41 54633.0 42-43 59379.0 44-45 68971.0 46-47 69344.0 48-49 65966.0 50-51 60077.0 52-53 56000.0 54-55 60505.0 56-57 62484.0 58-59 61519.0 60-61 61349.0 62-63 57876.0 64-65 58475.0 66-67 61177.0 68-69 62748.0 70-71 62173.0 72-73 57964.0 74-75 57901.0 76-77 58292.0 78-79 61112.0 80-81 61674.0 82-83 58217.0 84-85 56745.0 86-87 58568.0 88-89 61989.0 90-91 64842.0 92-93 64795.0 94-95 68598.0 96-97 102818.0 98-99 461548.0 100-101 3447146.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.76131127227272 #Duplication Level Percentage of deduplicated Percentage of total 1 88.14285133722424 72.0667510460845 2 7.677071489290377 12.553748633907217 3 2.2033365108208476 5.404430468963598 4 0.8738189581807073 2.8577833534170347 5 0.4101652660827768 1.6767824996634242 6 0.2316397174128028 1.1363500223045675 7 0.14184935419848635 0.8118452441675315 8 0.08767715867102754 0.5734879569256262 9 0.05434814656162581 0.3999218155286567 >10 0.1734351639506842 2.071610543144745 >50 0.002349750124959554 0.1289243795802292 >100 0.0012352726371083697 0.1997233475133177 >500 2.2187484432964778E-4 0.11864068879947536 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 1.691737368600644E-5 0.0 5 0.0 0.0 0.0 3.383474737201288E-5 0.0 6 0.0 0.0 0.0 3.383474737201288E-5 0.0 7 0.0 0.0 0.0 3.383474737201288E-5 0.0 8 0.0 0.0 0.0 3.383474737201288E-5 0.0 9 0.0 0.0 0.0 3.383474737201288E-5 0.0 10-11 1.691737368600644E-5 0.0 0.0 6.766949474402576E-5 0.0 12-13 1.691737368600644E-5 0.0 0.0 6.766949474402576E-5 0.0 14-15 1.691737368600644E-5 0.0 0.0 7.612818158702898E-5 0.0 16-17 1.691737368600644E-5 0.0 0.0 9.304555527303541E-5 0.0 18-19 1.691737368600644E-5 0.0 0.0 1.1842161580204507E-4 0.0 20-21 1.691737368600644E-5 0.0 0.0 1.353389894880515E-4 0.0 22-23 1.691737368600644E-5 0.0 0.0 2.0300848423207725E-4 0.0 24-25 1.691737368600644E-5 0.0 0.0 2.4530191844709335E-4 0.0 26-27 1.691737368600644E-5 0.0 0.0 3.552648474061352E-4 0.0 28-29 1.691737368600644E-5 0.0 0.0 9.135381790443477E-4 0.0 30-31 1.691737368600644E-5 0.0 0.0 0.0035780245345903615 0.0 32-33 1.691737368600644E-5 0.0 0.0 0.007748157148190949 0.0 34-35 1.691737368600644E-5 0.0 0.0 0.012645736830289814 0.0 36-37 1.691737368600644E-5 0.0 0.0 0.019920207515272584 0.0 38-39 1.691737368600644E-5 0.0 0.0 0.030679657179572675 0.0 40-41 1.691737368600644E-5 0.0 0.0 0.04205659098341201 0.0 42-43 1.691737368600644E-5 0.0 0.0 0.05184329166076673 0.0 44-45 1.691737368600644E-5 0.0 0.0 0.06218826566975967 0.0 46-47 1.691737368600644E-5 0.0 0.0 0.07357365816044201 0.0 48-49 1.691737368600644E-5 0.0 0.0 0.08452765762213117 0.0 50-51 1.691737368600644E-5 0.0 0.0 0.09505026405482717 0.0 52-53 1.691737368600644E-5 0.0 0.0 0.10562362260858121 0.0 54-55 1.691737368600644E-5 0.0 0.0 0.1150635171253728 0.0 56-57 1.691737368600644E-5 0.0 0.0 0.12446957689479238 0.0 58-59 1.691737368600644E-5 0.0 0.0 0.1335034544431198 0.0 60-61 1.691737368600644E-5 0.0 0.0 0.1421820671440411 0.0 62-63 1.691737368600644E-5 0.0 0.0 0.15041236944228326 0.0 64-65 1.691737368600644E-5 0.0 0.0 0.1581689852773172 0.0 66-67 1.691737368600644E-5 0.0 0.0 0.16620473777817027 0.0 68-69 1.691737368600644E-5 0.0 0.0 0.17401210573426223 0.0 70-71 1.691737368600644E-5 0.0 0.0 0.18170105207455217 0.0 72-73 1.691737368600644E-5 0.0 0.0 0.1878166826620435 0.0 74-75 1.691737368600644E-5 0.0 0.0 0.1925958407283403 0.0 76-77 1.691737368600644E-5 0.0 0.0 0.19637687374716276 0.0 78-79 1.691737368600644E-5 0.0 0.0 0.19979418323173603 0.0 80-81 1.691737368600644E-5 0.0 0.0 0.20140133373190666 0.0 82-83 1.691737368600644E-5 0.0 0.0 0.2020272765582889 0.0 84-85 1.691737368600644E-5 0.0 0.0 0.2025178803951831 0.0 86-87 1.691737368600644E-5 0.0 0.0 0.20273780625310117 0.0 88-89 1.691737368600644E-5 0.0 0.0 0.2028223931215312 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6905 0.0 42.72657 1 GTATCAA 12050 0.0 33.939995 1 ATCAACG 14205 0.0 27.769863 3 CAACGCA 14465 0.0 27.2423 5 TATCAAC 14765 0.0 27.10974 2 TCAACGC 14720 0.0 26.967419 4 AACGCAG 15255 0.0 25.913227 6 GTACATG 20040 0.0 23.695648 1 TACATGG 19910 0.0 23.642248 2 ACGCAGA 16810 0.0 23.318937 7 ACATGGG 19880 0.0 23.135805 3 CGCAGAG 17715 0.0 22.057482 8 CATGGGG 14885 0.0 20.432848 4 GTACTAG 1830 0.0 19.472828 1 GCAGAGT 20965 0.0 18.638124 9 ACGGTAC 695 0.0 17.886051 3 GTACTGG 3505 0.0 17.851332 1 GAGTACT 10515 0.0 17.851255 12-13 AGAGTAC 18520 0.0 16.99301 10-11 TAACGCC 670 0.0 16.698238 4 >>END_MODULE