##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140087_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4742102 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.78436693263873 34.0 31.0 34.0 31.0 34.0 2 32.988488860003436 34.0 33.0 34.0 31.0 34.0 3 33.096722508288515 34.0 33.0 34.0 31.0 34.0 4 36.465040819450955 37.0 37.0 37.0 35.0 37.0 5 36.324603097951076 37.0 37.0 37.0 35.0 37.0 6 36.35362693590311 37.0 37.0 37.0 35.0 37.0 7 36.36196184729894 37.0 37.0 37.0 35.0 37.0 8 36.37332284290806 37.0 37.0 37.0 35.0 37.0 9 38.28307046115837 39.0 39.0 39.0 37.0 39.0 10-11 38.19135490970038 39.0 39.0 39.0 37.0 39.0 12-13 38.17840717049106 39.0 39.0 39.0 37.0 39.0 14-15 39.69695021321768 41.0 40.0 41.0 37.5 41.0 16-17 39.67490418805838 41.0 40.0 41.0 37.0 41.0 18-19 39.70389755429132 41.0 40.0 41.0 38.0 41.0 20-21 39.71783778303568 41.0 40.0 41.0 38.0 41.0 22-23 39.67121573108747 41.0 40.0 41.0 37.0 41.0 24-25 39.65025082920663 41.0 40.0 41.0 37.0 41.0 26-27 39.539036612561134 41.0 39.0 41.0 37.0 41.0 28-29 39.47730325814848 41.0 39.0 41.0 37.0 41.0 30-31 39.41949329248352 40.0 39.0 41.0 37.0 41.0 32-33 39.34281005101141 40.0 39.0 41.0 36.0 41.0 34-35 39.30627844182343 40.0 39.0 41.0 36.0 41.0 36-37 39.270495448285345 40.0 39.0 41.0 36.0 41.0 38-39 39.21115845802906 40.0 39.0 41.0 35.5 41.0 40-41 39.14367932776253 40.0 39.0 41.0 35.0 41.0 42-43 39.127876147350904 40.0 39.0 41.0 35.0 41.0 44-45 39.06228707844764 40.0 39.0 41.0 35.0 41.0 46-47 38.94591113204393 40.0 38.0 41.0 35.0 41.0 48-49 38.92718912645011 40.0 38.0 41.0 35.0 41.0 50-51 38.805508088703576 40.0 38.0 41.0 35.0 41.0 52-53 38.62528514041866 40.0 38.0 41.0 35.0 41.0 54-55 38.411272236240755 40.0 37.5 41.0 34.5 41.0 56-57 38.24162659421687 40.0 37.0 41.0 34.0 41.0 58-59 38.05268155738747 39.5 36.5 41.0 34.0 41.0 60-61 37.794200561145736 39.0 36.0 41.0 34.0 41.0 62-63 37.599434039760084 39.0 35.5 41.0 34.0 41.0 64-65 37.29737214685436 38.5 35.0 40.0 33.5 41.0 66-67 37.02892554346482 37.5 35.0 40.0 33.0 41.0 68-69 36.743681294491566 37.0 35.0 40.0 33.0 41.0 70-71 36.28521754773591 36.5 35.0 39.0 33.0 41.0 72-73 36.01878925958371 36.0 35.0 39.0 33.0 41.0 74-75 35.66370884488161 35.5 35.0 38.5 32.5 40.0 76-77 33.9130159974617 34.5 33.0 36.0 30.0 39.0 78-79 34.91362009461882 35.0 34.0 37.0 31.5 39.0 80-81 34.85906300043969 35.0 34.0 36.0 32.0 39.0 82-83 34.6233880133558 35.0 34.0 36.0 32.0 37.0 84-85 34.41381274942965 35.0 34.0 36.0 32.0 37.0 86-87 34.26037401669667 35.0 34.0 35.0 32.0 37.0 88-89 34.123809653291836 35.0 34.0 35.0 31.5 36.0 90-91 34.07826761930849 35.0 34.0 35.0 32.0 36.0 92-93 33.97457256945324 35.0 34.0 35.0 31.0 36.0 94-95 33.842108634471984 35.0 34.0 35.0 31.0 35.5 96-97 33.87962334244861 35.0 34.0 35.0 31.0 35.0 98-99 33.91374684920936 35.0 34.0 35.0 31.0 35.0 100-101 32.64921008890342 34.0 31.5 35.0 28.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 8.0 20 14.0 21 54.0 22 221.0 23 622.0 24 1608.0 25 3432.0 26 6754.0 27 11308.0 28 17019.0 29 24513.0 30 33745.0 31 45191.0 32 62420.0 33 89928.0 34 147468.0 35 254937.0 36 543515.0 37 1204414.0 38 1503733.0 39 771329.0 40 19867.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.50195335317545 19.271053216485008 12.488301601273022 24.73869182906652 2 15.84588401740264 20.52604375459586 39.578396550513396 24.049675677488104 3 19.028986460782154 25.453535540130524 29.31810877767459 26.199369221412734 4 13.015135482113207 16.81806928657376 37.78862200770882 32.378173223604215 5 13.74765873867749 37.50824001676894 35.08180549469412 13.662295749859451 6 31.55751437925381 36.63265553581502 18.18644791573309 13.623382169198084 7 27.85389264085842 31.532725361031883 22.679731477728655 17.933650520381047 8 25.860557195943905 35.226825572288405 20.71849150440037 18.194125727367314 9 26.49415807589124 15.627373683653367 20.544813249483035 37.333654990972356 10-11 25.388613382996443 25.749351366471856 28.153642137756087 20.708393112775617 12-13 25.85633982003491 23.266330127044288 28.236948018556813 22.640382034363988 14-15 23.026212848226375 24.478438042876345 25.615170234634345 26.880178874262935 16-17 22.896228297071637 27.522457340647673 26.278357150478836 23.302957211801857 18-19 22.912254945169884 27.0206334659187 27.740925859460635 22.326185729450778 20-21 23.65758097597577 26.35108632249689 27.311501020041916 22.679831681485428 22-23 23.599190905852645 26.209470686998205 27.126018037375154 23.065320369773996 24-25 23.220515663191392 26.375080047686904 27.258874008526607 23.145530280595093 26-27 23.21573021759871 26.6066297834309 27.177231951273956 23.000408047696432 28-29 23.06148572374564 26.72855880125834 27.120280013835142 23.089675461160876 30-31 23.30312607504828 26.590743413045942 27.001953512518362 23.10417699938742 32-33 23.163491299965496 26.699521612833593 26.999830877516228 23.137156209684683 34-35 23.13099050399913 26.84516435747385 27.103458228205874 22.920386910321145 36-37 23.222699908469846 26.684367154702088 26.990614262472796 23.10231867435527 38-39 23.209878072540572 26.73541555490865 27.004030418242685 23.05067595430809 40-41 23.31664215963918 26.488342756716154 27.210004146215123 22.985010937429546 42-43 23.285917607247338 26.575140182963946 26.861292587634523 23.277649622154193 44-45 23.2528295777741 26.941077501051836 26.609394933253128 23.196697987920942 46-47 23.31972965623344 26.812560412006885 26.500502973394752 23.36720695836492 48-49 23.44125249997388 26.66933253163925 26.440803288183872 23.448611680202994 50-51 23.116954242984377 26.767054176456245 26.55245945121531 23.56353212934406 52-53 23.25089202440186 26.815112950394344 26.30657584178559 23.627419183418205 54-55 23.423046114922567 26.689662280816762 26.33086834946454 23.556423254796133 56-57 23.507148019501216 26.69209905692168 26.358194777373868 23.44255814620324 58-59 23.384719195210085 26.762355057708405 26.555250243777035 23.297675503304475 60-61 23.500518217312266 26.87340792265862 26.173417280586236 23.45265657944288 62-63 23.543780978162804 26.823126303498174 26.16905779069424 23.464034927644782 64-65 23.338349216964833 26.80919811962688 26.23286401770983 23.619588645698457 66-67 23.439755647497332 26.782819096085 26.13392861836744 23.643496638050227 68-69 23.37617153166551 26.76884428878771 26.304905680707556 23.55007849883922 70-71 23.442299433706157 26.474213470622924 26.240392758162713 23.84309433750821 72-73 23.469648006783665 26.609166489150354 26.28684905592224 23.634336448143742 74-75 23.285418857099092 26.76695655806764 26.342048643266462 23.605575941566805 76-77 23.478975559032644 26.68137759360949 26.106094945224562 23.733551902133307 78-79 23.380851410488866 26.696278709922964 26.143048322790662 23.779821556797504 80-81 23.345128857726422 26.75392532288084 26.239413889059026 23.661531930333712 82-83 23.74801435351929 26.557097629187954 26.363772650770663 23.33111536652209 84-85 23.700487556928596 26.588785830998646 26.119076219281933 23.59165039279082 86-87 23.337723677171965 26.784300714325465 26.322371868306714 23.555603740195856 88-89 23.5754443299787 26.468547973066215 26.224460152698054 23.73154754425703 90-91 23.64782473031795 26.509937875434293 26.181360559521128 23.66087683472663 92-93 23.75768985322272 26.536104020421185 26.23165283982131 23.47455328653478 94-95 23.456699166890342 26.66118054322683 26.382725429529064 23.49939486035376 96-97 23.420431985406623 26.57606126360148 26.331713501090565 23.67179324990133 98-99 23.764300578289426 27.1004996508779 26.330554587684734 22.804645183147937 100-101 28.48259875818196 34.27102456061116 26.622210846362464 10.624165834844408 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 419.0 1 452.0 2 898.0 3 1391.5 4 2050.0 5 3585.0 6 4725.0 7 5253.5 8 5355.5 9 4865.0 10 4156.5 11 3567.0 12 3895.5 13 5407.5 14 8775.5 15 13054.5 16 16288.5 17 18221.0 18 18563.5 19 17483.0 20 15959.5 21 14632.0 22 14301.0 23 15751.0 24 19073.5 25 23769.5 26 29808.5 27 36963.0 28 44291.0 29 52602.5 30 60764.5 31 68242.5 32 77833.0 33 88949.5 34 99476.5 35 110892.5 36 124587.0 37 137083.5 38 144723.0 39 150068.5 40 156794.5 41 163168.5 42 169453.5 43 179387.0 44 192076.5 45 205220.0 46 213388.0 47 219419.0 48 228531.5 49 234125.5 50 236314.5 51 237098.5 52 232153.5 53 226549.5 54 221331.5 55 211194.5 56 198312.5 57 184447.0 58 166942.5 59 142886.0 60 116108.0 61 92407.5 62 72923.5 63 57203.5 64 43999.5 65 32608.0 66 24529.0 67 18790.0 68 14180.0 69 10499.5 70 7743.0 71 5737.5 72 4162.0 73 2890.5 74 2006.0 75 1390.0 76 922.0 77 593.0 78 411.5 79 291.0 80 186.5 81 109.0 82 76.0 83 47.0 84 27.0 85 21.0 86 20.0 87 19.5 88 14.0 89 6.5 90 4.5 91 4.0 92 3.5 93 3.5 94 2.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0013285247765653292 3 5.482800665190246E-4 4 0.0 5 0.0 6 5.69367761385141E-4 7 0.0 8 0.0 9 0.0 10-11 3.690346601570359E-4 12-13 3.268592704248032E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 6.329587975470737E-5 28-29 0.0 30-31 4.2327321195903435E-5 32-33 2.5495786821227794E-4 34-35 1.067374036788327E-5 36-37 6.87949458073189E-4 38-39 2.281917175534197E-4 40-41 8.798326734221686E-5 42-43 0.0 44-45 0.0 46-47 0.0 48-49 1.1607538446198653E-5 50-51 3.531840840182554E-5 52-53 0.0 54-55 6.645854267774276E-4 56-57 3.67614397005168E-5 58-59 0.0 60-61 8.449809330683036E-4 62-63 1.2788011597191957E-5 64-65 1.2960937936419082E-5 66-67 2.6285761449880545E-5 68-69 0.0 70-71 0.0 72-73 5.493731995151781E-5 74-75 1.3925926049711936E-5 76-77 1.4124295780267767E-5 78-79 2.865958134943352E-5 80-81 0.0 82-83 0.0 84-85 5.9940574914030233E-5 86-87 4.865746452642754E-4 88-89 7.717941945949401E-5 90-91 1.5687623030183614E-5 92-93 1.5954049783974188E-5 94-95 1.6227931028047547E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 84.0 20-21 304.0 22-23 599.0 24-25 1034.0 26-27 2741.0 28-29 7963.0 30-31 17883.0 32-33 20822.0 34-35 28427.0 36-37 46504.0 38-39 56541.0 40-41 52683.0 42-43 55835.0 44-45 63482.0 46-47 64054.0 48-49 61513.0 50-51 56616.0 52-53 53163.0 54-55 56912.0 56-57 58488.0 58-59 57156.0 60-61 56042.0 62-63 52399.0 64-65 52631.0 66-67 55110.0 68-69 54953.0 70-71 54890.0 72-73 50565.0 74-75 50227.0 76-77 50188.0 78-79 52493.0 80-81 52151.0 82-83 49092.0 84-85 48047.0 86-87 48798.0 88-89 51260.0 90-91 53287.0 92-93 52874.0 94-95 55110.0 96-97 82769.0 98-99 357296.0 100-101 2599116.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.75868782536206 #Duplication Level Percentage of deduplicated Percentage of total 1 89.1655078875184 74.68385939940512 2 7.183071715402608 12.0328932287519 3 1.988732138206684 4.997207829969554 4 0.7619349663759676 2.5527469196764967 5 0.3586315937296 1.501925585175482 6 0.19637331048996368 0.986878248633706 7 0.10345793396527019 0.6065850555837792 8 0.06283406527453364 0.42103190865024687 9 0.04313478287513859 0.3251621531928156 >10 0.1339012684134381 1.654003520068143 >50 0.001543838705213451 0.0818457892000684 >100 8.764990432227084E-4 0.15586036169265277 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 2.1087694866116334E-5 0.0 6 0.0 0.0 0.0 2.1087694866116334E-5 0.0 7 0.0 0.0 0.0 2.1087694866116334E-5 0.0 8 0.0 0.0 0.0 4.217538973223267E-5 0.0 9 0.0 0.0 0.0 4.217538973223267E-5 0.0 10-11 0.0 0.0 0.0 6.3263084598349E-5 0.0 12-13 0.0 0.0 0.0 6.3263084598349E-5 0.0 14-15 0.0 0.0 0.0 6.3263084598349E-5 0.0 16-17 0.0 0.0 0.0 6.3263084598349E-5 0.0 18-19 0.0 0.0 0.0 6.3263084598349E-5 0.0 20-21 0.0 0.0 0.0 6.3263084598349E-5 0.0 22-23 0.0 0.0 0.0 1.0543847433058166E-4 0.0 24-25 0.0 0.0 0.0 1.26526169196698E-4 0.0 26-27 0.0 0.0 0.0 2.0033310122810518E-4 0.0 28-29 0.0 0.0 0.0 6.95893930581839E-4 0.0 30-31 0.0 0.0 0.0 0.0022985587404066804 0.0 32-33 0.0 0.0 0.0 0.0056409583766861195 0.0 34-35 0.0 0.0 0.0 0.009194234961626722 0.0 36-37 0.0 0.0 0.0 0.014518877915321096 0.0 38-39 0.0 0.0 0.0 0.02281688584513787 0.0 40-41 0.0 0.0 0.0 0.0315577353671431 0.0 42-43 0.0 0.0 0.0 0.03905441089204745 0.0 44-45 0.0 0.0 0.0 0.04758438346539151 0.0 46-47 0.0 0.0 0.0 0.0573163546461042 0.0 48-49 0.0 0.0 0.0 0.06638406343853422 0.0 50-51 0.0 0.0 0.0 0.0753357899092006 0.0 52-53 0.0 0.0 0.0 0.08391848171970995 0.0 54-55 0.0 0.0 0.0 0.09259606815711682 0.0 56-57 0.0 0.0 0.0 0.10080972530746914 0.0 58-59 0.0 0.0 0.0 0.10865434779766442 0.0 60-61 0.0 0.0 0.0 0.11642516335582828 0.0 62-63 0.0 0.0 0.0 0.12378476886410289 0.0 64-65 0.0 0.0 0.0 0.13084914664425185 0.0 66-67 0.0 0.0 0.0 0.13796624366156612 0.0 68-69 2.1087694866116334E-5 0.0 0.0 0.14528367378010848 0.0 70-71 2.1087694866116334E-5 0.0 0.0 0.15228478847565913 0.0 72-73 2.1087694866116334E-5 0.0 0.0 0.1581577114958725 0.0 74-75 2.1087694866116334E-5 0.0 0.0 0.16242796970626106 0.0 76-77 2.1087694866116334E-5 0.0 0.0 0.1666033332897521 0.0 78-79 2.1087694866116334E-5 0.0 0.0 0.1704096622130861 0.0 80-81 2.1087694866116334E-5 0.0 0.0 0.17238136168306797 0.0 82-83 2.1087694866116334E-5 0.0 0.0 0.17284529097012252 0.0 84-85 2.1087694866116334E-5 0.0 0.0 0.1733092202571771 0.0 86-87 2.1087694866116334E-5 0.0 0.0 0.17347792181610602 0.0 88-89 2.1087694866116334E-5 0.0 0.0 0.17353064105327132 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5305 0.0 37.604996 1 GTATCAA 8365 0.0 32.86469 1 ATCAACG 9905 0.0 26.854382 3 CAACGCA 9950 0.0 26.814432 5 TCAACGC 10315 0.0 25.944212 4 TATCAAC 10520 0.0 25.708448 2 AACGCAG 10845 0.0 24.93829 6 TACATGG 14990 0.0 23.56038 2 GTACATG 15415 0.0 23.042328 1 ACATGGG 15430 0.0 22.494358 3 ACGCAGA 12195 0.0 21.944382 7 CGCAGAG 12920 0.0 20.650215 8 CATGGGG 11695 0.0 19.62375 4 GTACTAG 1250 0.0 18.489733 1 GCAGAGT 15660 0.0 16.855843 9 GTATAAG 2265 0.0 16.46969 1 AGAGTAC 13720 0.0 15.7667265 10-11 GAGTACT 7195 0.0 15.582001 12-13 ATGGGGG 8285 0.0 15.41643 5 CAGAGTA 14845 0.0 15.37763 10-11 >>END_MODULE