##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140086_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6724245 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.943697173437315 18.0 18.0 30.0 18.0 33.0 2 31.170164977629458 32.0 31.0 33.0 27.0 33.0 3 31.87317163488243 33.0 31.0 33.0 29.0 33.0 4 32.62879936706649 33.0 33.0 33.0 31.0 34.0 5 33.005067780843795 33.0 33.0 34.0 32.0 34.0 6 37.00070625029279 38.0 37.0 38.0 36.0 38.0 7 37.228282431707946 38.0 38.0 38.0 36.0 38.0 8 37.17292841055018 38.0 38.0 38.0 36.0 38.0 9 37.403192477371064 38.0 38.0 38.0 37.0 38.0 10-11 37.45606465856018 38.0 38.0 38.0 37.0 38.0 12-13 37.488180903581 38.0 38.0 38.0 37.0 38.0 14-15 37.45430944291887 38.0 38.0 38.0 37.0 38.0 16-17 37.45203141765358 38.0 38.0 38.0 37.0 38.0 18-19 37.42207452286465 38.0 38.0 38.0 37.0 38.0 20-21 37.51227762992238 38.0 38.0 38.0 37.0 38.0 22-23 37.52915869201479 38.0 38.0 38.0 37.5 38.0 24-25 37.533441600311434 38.0 38.0 38.0 38.0 38.0 26-27 37.50708363065883 38.0 38.0 38.0 37.5 38.0 28-29 37.414160387184104 38.0 38.0 38.0 37.0 38.0 30-31 37.460180146168085 38.0 38.0 38.0 37.0 38.0 32-33 37.43667114465076 38.0 38.0 38.0 37.0 38.0 34-35 37.38728755503543 38.0 38.0 38.0 37.0 38.0 36-37 37.36500490818363 38.0 38.0 38.0 37.0 38.0 38-39 37.277366186450905 38.0 38.0 38.0 37.0 38.0 40-41 37.3974849143125 38.0 38.0 38.0 37.0 38.0 42-43 37.3531312520777 38.0 38.0 38.0 37.0 38.0 44-45 37.355580566307665 38.0 38.0 38.0 37.0 38.0 46-47 37.3254380246054 38.0 38.0 38.0 37.0 38.0 48-49 37.29114514828237 38.0 38.0 38.0 37.0 38.0 50-51 37.25861345366533 38.0 38.0 38.0 37.0 38.0 52-53 37.23602244575862 38.0 38.0 38.0 37.0 38.0 54-55 37.21504709852189 38.0 38.0 38.0 37.0 38.0 56-57 37.21313555803037 38.0 38.0 38.0 37.0 38.0 58-59 37.19888051375817 38.0 38.0 38.0 37.0 38.0 60-61 37.178349540755804 38.0 38.0 38.0 37.0 38.0 62-63 37.16817196299979 38.0 38.0 38.0 37.0 38.0 64-65 37.158477853872384 38.0 38.0 38.0 36.5 38.0 66-67 37.14336124872891 38.0 38.0 38.0 36.0 38.0 68-69 37.13591503519773 38.0 38.0 38.0 36.0 38.0 70-71 37.136665552913584 38.0 38.0 38.0 36.0 38.0 72-73 37.082791534182405 38.0 38.0 38.0 36.0 38.0 74-75 37.08761523584673 38.0 38.0 38.0 36.0 38.0 76-77 37.098425934403394 38.0 38.0 38.0 36.0 38.0 78-79 37.10500232808759 38.0 38.0 38.0 36.0 38.0 80-81 37.112348045275034 38.0 38.0 38.0 36.0 38.0 82-83 37.12462353854084 38.0 38.0 38.0 36.0 38.0 84-85 37.11828718179916 38.0 38.0 38.0 36.0 38.0 86-87 37.110152546896785 38.0 38.0 38.0 36.0 38.0 88-89 37.09581234104516 38.0 38.0 38.0 36.0 38.0 90-91 37.09117867580218 38.0 38.0 38.0 36.0 38.0 92-93 37.089457773888455 38.0 38.0 38.0 36.0 38.0 94-95 37.05258852249503 38.0 38.0 38.0 36.0 38.0 96-97 37.06292131591995 38.0 38.0 38.0 36.0 38.0 98-99 37.05981482242876 38.0 38.0 38.0 36.0 38.0 100 35.47542205034057 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 5.0 18 43.0 19 39.0 20 66.0 21 225.0 22 542.0 23 1286.0 24 2583.0 25 5078.0 26 8973.0 27 14348.0 28 22416.0 29 32897.0 30 45954.0 31 60960.0 32 79186.0 33 106288.0 34 162567.0 35 303665.0 36 1076126.0 37 4800998.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.617716933276526 20.022976557219437 19.118309936654597 24.240996572849443 2 13.265553628033524 20.91834981971927 43.684731422979716 22.131365129267493 3 16.819955251481762 27.901526491078183 32.45653601259323 22.82198224484682 4 11.211340455322494 19.70085860940522 37.767095041896894 31.32070589337539 5 11.90114149872572 38.63519276027575 36.033744053950514 13.429921687048024 6 27.244223789294157 38.51369780099336 19.221640345390348 15.020438064322125 7 24.131110630264065 33.84446878422782 22.32313070091884 19.701289884589272 8 23.79161844561811 36.45326863607824 22.19442726778721 17.560685650516444 9 24.51649496923961 16.643833823699122 20.503397265293643 38.33627394176762 10-11 23.3057168499958 27.01349370821557 28.80952434065088 20.871265101137748 12-13 24.6493100712422 24.330590274447168 28.56650077443639 22.453598879874246 14-15 21.945454243967482 25.89199426047045 25.84137890881273 26.321172586749338 16-17 21.483913807423733 29.90540201911144 26.309169282201943 22.301514891262887 18-19 21.493966980679616 27.62358450651337 28.476780664595058 22.405667848211955 20-21 22.484952177670298 26.60512708215283 28.22555823214549 22.68436250803138 22-23 22.072164581773514 28.21592852713338 28.032857660112786 21.679049230980326 24-25 22.2593066640943 28.62148294497758 28.231318492212637 20.887891898715484 26-27 22.110977394276937 28.8523906378427 28.263970383313787 20.772661584566574 28-29 21.252838989756242 27.592432380561267 28.604179636639117 22.550548993043375 30-31 23.011923723093833 27.804231412531564 28.69981460940563 20.484030254968964 32-33 22.775889703248374 27.69400408638441 29.189169000542346 20.340937209824865 34-35 21.93050324747529 27.978377512540913 29.794601545661198 20.2965176943226 36-37 21.94536247437433 27.297959366200413 29.31507031436546 21.441607845059796 38-39 21.109030275723462 26.435813215729166 30.133443657029535 22.321712851517837 40-41 21.04073244235475 26.350898049375342 30.61643197654253 21.991937531727377 42-43 21.942802637023895 26.005780414856737 30.661357576673666 21.390059371445705 44-45 20.800113846235647 27.10581913773987 30.338841114129288 21.755225901895194 46-47 22.221421168267103 25.921484116878723 28.99898584988254 22.858108864971634 48-49 21.722900675453808 25.99879026776893 29.427443756201793 22.850865300575464 50-51 20.995277402958866 26.619215683643155 30.012570255472315 22.372936657925667 52-53 21.07247219094907 27.272782973600627 30.636256445602942 21.018488389847352 54-55 21.000850772353623 27.72637763480671 29.092623760842322 22.180147831997346 56-57 22.035952136335897 28.796745419868213 27.517698222335547 21.649604221460343 58-59 20.359139979453577 30.28124144196484 29.154228254077267 20.205390324504318 60-61 21.429356974325735 31.870236673471048 26.567148918159127 20.13325743404409 62-63 20.193631867827456 32.73614870585019 26.684566010244254 20.3856534160781 64-65 20.256311667586953 32.363559622042395 26.863342406537544 20.51678630383311 66-67 20.484166771606745 31.967551576116755 26.84937715535924 20.698904496917258 68-69 20.74664190882114 31.184357931945762 27.166515803862374 20.902484355370728 70-71 20.922187025912674 30.16818585938747 27.557227981090954 21.352399133608905 72-73 21.450671935464925 28.66614286800948 28.18251494607474 21.700670250450862 74-75 21.52232857348325 28.549726800820473 28.119259529114544 21.808685096581737 76-77 21.58669443269964 28.496959303267516 27.951935653404043 21.964410610628807 78-79 21.650928765706272 28.51348176340907 27.988218253964682 21.847371216919974 80-81 21.616785272482602 28.42444461762203 28.000582903595628 21.958187206299737 82-83 21.7383426741952 28.27271319974854 28.14125403380285 21.847690092253416 84-85 21.92763713818855 28.23647537990144 27.9661528516076 21.86973463030241 86-87 21.690434487099385 28.276643928938167 28.086495757626484 21.946425826335965 88-89 21.908118705276504 28.174178275982058 27.98956641661332 21.928136602128117 90-91 21.917146771788055 28.15790910470079 28.026075766727715 21.89886835678344 92-93 21.975706680416927 28.17545838426917 27.987131976169078 21.86170295914482 94-95 21.844662129743135 28.294294259703356 27.98556873766992 21.87547487288359 96-97 21.874611095637842 28.38154630570561 28.117195516533126 21.626647082123423 98-99 22.92418814291094 30.20649193663679 28.377137510623296 18.492182409828974 100 28.951887131504822 41.285419446176576 29.76269342231861 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2273.0 1 2135.5 2 2380.5 3 3007.5 4 3933.0 5 5104.0 6 5727.5 7 6002.5 8 6050.0 9 6020.0 10 6529.0 11 8271.0 12 10861.0 13 17063.0 14 26477.0 15 33814.0 16 38506.0 17 39314.5 18 36996.5 19 33242.0 20 29673.5 21 27828.5 22 28499.5 23 33102.0 24 40842.0 25 51677.5 26 66214.0 27 81636.5 28 96485.0 29 113113.5 30 129344.5 31 146002.0 32 164217.0 33 181612.5 34 196354.0 35 209897.0 36 223572.0 37 235309.5 38 244127.0 39 250752.5 40 258991.0 41 264991.5 42 267750.0 43 273092.5 44 335777.0 45 415561.5 46 389525.0 47 361457.0 48 331531.5 49 270159.5 50 251545.0 51 240597.0 52 229208.0 53 215411.0 54 200078.5 55 183222.5 56 164548.5 57 145047.5 58 126730.5 59 109713.0 60 92225.0 61 74349.0 62 57562.5 63 43678.5 64 32953.5 65 24620.0 66 18048.0 67 13375.0 68 9829.5 69 6947.5 70 4920.0 71 3475.0 72 2418.0 73 1605.5 74 1062.0 75 739.0 76 507.0 77 313.5 78 212.0 79 150.5 80 114.0 81 84.0 82 59.0 83 43.0 84 31.0 85 22.5 86 14.0 87 10.0 88 9.0 89 7.0 90 4.5 91 1.0 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 1.4871558070831745E-4 3 0.0 4 0.0 5 0.00673681580608678 6 4.015320679124571E-4 7 0.0 8 4.461467421249523E-5 9 1.9333025492081267E-4 10-11 0.0 12-13 0.0 14-15 7.4357790354158715E-6 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.0420451833768784E-4 26-27 7.445718108984167E-6 28-29 7.152370220987378E-4 30-31 2.686272275633026E-4 32-33 0.0016166839387390555 34-35 2.8549812284984225E-4 36-37 0.0013143617055429429 38-39 7.537240247857958E-4 40-41 6.603627618367145E-4 42-43 8.517911968618772E-5 44-45 5.473373717969719E-5 46-47 4.743060132279204E-4 48-49 0.0015662822269560527 50-51 0.0018997709927119934 52-53 0.001878940823085549 54-55 0.0013926629735002607 56-57 0.0031600742251539577 58-59 3.947020570527547E-4 60-61 3.396953459274817E-5 62-63 0.002062478247973917 64-65 0.0024616275194889064 66-67 0.0033353779616417264 68-69 7.747400473703409E-4 70-71 0.005230070425089123 72-73 0.0011457964339541271 74-75 0.004579229357683508 76-77 3.062420728992461E-4 78-79 0.0012002449699983766 80-81 0.0 82-83 0.0 84-85 9.974134782769059E-4 86-87 0.0 88-89 1.0647816340500982E-5 90-91 0.0034203420147799774 92-93 6.230867411076777E-4 94-95 1.1075751160212624E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1086.0 20-21 3175.0 22-23 1962.0 24-25 2115.0 26-27 3358.0 28-29 7165.0 30-31 19628.0 32-33 23726.0 34-35 31549.0 36-37 48742.0 38-39 56751.0 40-41 54199.0 42-43 59342.0 44-45 68877.0 46-47 68984.0 48-49 64705.0 50-51 75386.0 52-53 52455.0 54-55 55045.0 56-57 57104.0 58-59 61084.0 60-61 94679.0 62-63 85778.0 64-65 87908.0 66-67 113423.0 68-69 129648.0 70-71 178269.0 72-73 82617.0 74-75 59077.0 76-77 61305.0 78-79 64714.0 80-81 64455.0 82-83 59538.0 84-85 56413.0 86-87 59264.0 88-89 60753.0 90-91 61228.0 92-93 59482.0 94-95 63094.0 96-97 180378.0 98-99 1355861.0 100-101 2929923.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.82471511461229 #Duplication Level Percentage of deduplicated Percentage of total 1 89.01081854164444 74.61306506371794 2 7.395122835079748 12.397881297762478 3 1.9942883438953154 5.015119568502502 4 0.7420526107583026 2.4880939478747597 5 0.35456828519418165 1.4860792747539442 6 0.1807361953673418 0.9090096052539801 7 0.10582273106723193 0.6209392199052663 8 0.06013023482878624 0.40323198434381946 9 0.03847957648332601 0.2902985582801164 >10 0.11478099343217257 1.4003004217194523 >50 0.0018497340792414723 0.1059373521097726 >100 0.001261808709368393 0.2147736813429736 >500 8.81094605518914E-5 0.05527002443297926 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.974311614166349E-5 2 0.0 0.0 0.0 2.974311614166349E-5 2.974311614166349E-5 3 0.0 0.0 0.0 5.948623228332698E-5 2.974311614166349E-5 4 0.0 1.4871558070831745E-5 0.0 7.435779035415871E-5 2.974311614166349E-5 5 0.0 1.4871558070831745E-5 0.0 7.435779035415871E-5 2.974311614166349E-5 6 0.0 1.4871558070831745E-5 0.0 7.435779035415871E-5 2.974311614166349E-5 7 0.0 1.4871558070831745E-5 0.0 8.922934842499046E-5 2.974311614166349E-5 8 0.0 2.974311614166349E-5 0.0 8.922934842499046E-5 2.974311614166349E-5 9 0.0 7.435779035415871E-5 0.0 1.1897246456665396E-4 2.974311614166349E-5 10-11 0.0 7.435779035415871E-5 0.0 1.1897246456665396E-4 2.974311614166349E-5 12-13 0.0 7.435779035415871E-5 0.0 1.4127980167290158E-4 3.7178895177079356E-5 14-15 0.0 1.2640824360206983E-4 0.0 1.561513597437333E-4 7.435779035415871E-5 16-17 0.0 1.4871558070831743E-4 0.0 1.7102291781456505E-4 8.922934842499046E-5 18-19 0.0 1.7845869684998092E-4 0.0 1.9333025492081267E-4 1.338440226374857E-4 20-21 0.0 2.0820181299164442E-4 0.0 2.156375920270603E-4 1.338440226374857E-4 22-23 0.0 2.5281648720413966E-4 0.0 3.0486694045205075E-4 1.4871558070831743E-4 24-25 7.435779035415872E-6 2.8255960334580316E-4 0.0 3.717889517707936E-4 1.6358713877914917E-4 26-27 1.4871558070831745E-5 2.9743116141663485E-4 0.0 4.833256373020317E-4 1.6358713877914917E-4 28-29 1.4871558070831745E-5 2.9743116141663485E-4 0.0 9.517797165332317E-4 1.6358713877914917E-4 30-31 1.4871558070831745E-5 3.2717427755829835E-4 0.0 0.0025207290930059807 1.6358713877914917E-4 32-33 1.4871558070831745E-5 3.2717427755829835E-4 0.0 0.006298104842997244 1.6358713877914917E-4 34-35 1.4871558070831745E-5 3.6435317273537775E-4 0.0 0.010856237391707173 1.6358713877914917E-4 36-37 1.4871558070831745E-5 4.015320679124571E-4 0.0 0.017972277928600164 1.6358713877914917E-4 38-39 1.4871558070831745E-5 4.015320679124571E-4 0.0 0.035498409115075374 1.7102291781456505E-4 40-41 1.4871558070831745E-5 4.7588985826661583E-4 0.0 0.053611966845348434 1.9333025492081267E-4 42-43 1.4871558070831745E-5 4.7588985826661583E-4 0.0 0.06476563539847224 2.0820181299164442E-4 44-45 1.4871558070831745E-5 4.833256373020317E-4 0.0 0.077205693724723 2.0820181299164442E-4 46-47 1.4871558070831745E-5 4.907614163374475E-4 0.0 0.09101393539349027 2.0820181299164442E-4 48-49 1.4871558070831745E-5 4.907614163374475E-4 0.0 0.10466602570251382 2.0820181299164442E-4 50-51 1.4871558070831745E-5 5.20504532479111E-4 0.0 0.11790171238555405 2.0820181299164442E-4 52-53 1.4871558070831745E-5 5.20504532479111E-4 0.0 0.151318103370713 2.2307337106247617E-4 54-55 1.4871558070831745E-5 5.279403115145269E-4 0.0 0.19042286531796507 2.3794492913330791E-4 56-57 1.4871558070831745E-5 5.353760905499428E-4 0.0 0.2460945429561237 2.3794492913330791E-4 58-59 1.4871558070831745E-5 5.353760905499428E-4 0.0 0.2874226028349651 2.3794492913330791E-4 60-61 1.4871558070831745E-5 5.353760905499428E-4 0.0 0.30639127515431097 2.3794492913330791E-4 62-63 1.4871558070831745E-5 5.353760905499428E-4 0.0 0.32213281937228644 2.3794492913330791E-4 64-65 1.4871558070831745E-5 6.692201131874285E-4 0.0 0.3304237129967751 2.3794492913330791E-4 66-67 1.4871558070831745E-5 6.692201131874285E-4 0.0 0.33805282228711175 2.3794492913330791E-4 68-69 1.4871558070831745E-5 6.692201131874285E-4 0.0 0.3452283490562881 2.3794492913330791E-4 70-71 1.4871558070831745E-5 6.692201131874285E-4 0.0 0.3510951787152312 2.3794492913330791E-4 72-73 1.4871558070831745E-5 6.766558922228444E-4 0.0 0.35502870582496626 2.5281648720413966E-4 74-75 1.4871558070831745E-5 6.989632293290919E-4 0.0 0.35835993483283257 2.5281648720413966E-4 76-77 1.4871558070831745E-5 7.58449461612419E-4 0.0 0.36164654916648636 2.5281648720413966E-4 78-79 1.4871558070831745E-5 7.58449461612419E-4 0.0 0.3635426728205174 2.5281648720413966E-4 80-81 1.4871558070831745E-5 7.58449461612419E-4 0.0 0.36422676449177566 2.6025226623955556E-4 82-83 1.4871558070831745E-5 7.58449461612419E-4 0.0 0.3647323974661839 3.123027194874666E-4 84-85 1.4871558070831745E-5 7.58449461612419E-4 0.0 0.36496290661628183 3.123027194874666E-4 86-87 1.4871558070831745E-5 7.58449461612419E-4 0.0 0.3650075212904943 3.1973849852288245E-4 88 1.4871558070831745E-5 7.881925777540825E-4 0.0 0.3650075212904943 3.2717427755829835E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 18695 0.0 58.8553 1 TATACAC 23775 0.0 48.58238 3 GGTATCA 11500 0.0 48.549427 1 TTATACA 23680 0.0 48.259125 2 GTATCAA 21770 0.0 34.53892 1 TACACAT 34885 0.0 33.168644 5 ATACACA 36955 0.0 31.8965 4 ACACATC 37830 0.0 30.205725 6 ATCAACG 28285 0.0 29.515123 3 TCAACGC 28880 0.0 28.977749 4 TATCAAC 29160 0.0 28.937181 2 CAACGCA 29200 0.0 28.6462 5 TGGTATC 4905 0.0 28.56068 2 ACATCTC 40280 0.0 28.358135 8 CACATCT 40585 0.0 28.175209 7 AACGCAG 30110 0.0 27.85913 6 GTGGTAT 4940 0.0 27.118166 1 CATCTCC 44405 0.0 25.622643 9 TGCGCGA 565 0.0 24.939383 94 ACGCAGA 34450 0.0 24.289995 7 >>END_MODULE